Wall clock time and date at job start Wed Apr 1 2020 03:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47038 * 269.99699 * 3 2 1 5 5 H 1.48498 * 109.47377 * 30.00042 * 3 2 1 6 6 H 1.48502 * 109.47093 * 150.00310 * 3 2 1 7 7 C 1.38815 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.38240 * 119.99597 * 89.99969 * 12 11 10 14 14 C 1.38234 * 119.99291 * 179.97438 * 13 12 11 15 15 C 1.38236 * 120.00644 * 359.97438 * 14 13 12 16 16 C 1.50690 * 120.00325 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47072 * 89.99715 * 16 15 14 18 18 C 1.34773 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.21283 * 120.00360 * 359.73034 * 18 17 16 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 16 21 21 H 1.09004 * 115.55876 * 325.30803 * 20 18 17 22 22 C 1.53182 * 117.52182 * 111.08331 * 20 18 17 23 23 C 1.52104 * 117.52465 * 179.53335 * 20 18 17 24 24 C 1.53712 * 121.73568 * 3.68192 * 23 20 18 25 25 C 1.54697 * 103.69530 * 143.46623 * 24 23 20 26 26 O 1.44495 * 104.87146 * 23.84277 * 25 24 23 27 27 C 1.44638 * 105.46257 * 320.02524 * 26 25 24 28 28 C 1.38239 * 119.99556 * 0.27085 * 15 14 13 29 29 C 1.38231 * 119.99974 * 269.97994 * 12 11 10 30 30 H 0.96996 * 120.00058 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00057 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46761 * 60.00535 * 10 9 7 33 33 H 1.08995 * 109.47587 * 300.00696 * 10 9 7 34 34 H 1.08998 * 109.47222 * 60.00074 * 11 10 9 35 35 H 1.09003 * 109.46904 * 300.00372 * 11 10 9 36 36 H 1.07996 * 120.00243 * 359.97438 * 13 12 11 37 37 H 1.08009 * 119.99626 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.47343 * 330.00265 * 16 15 14 39 39 H 1.08998 * 109.47656 * 210.00123 * 16 15 14 40 40 H 0.96998 * 119.99507 * 0.02562 * 17 16 15 41 41 H 1.09000 * 117.52131 * 214.84951 * 22 20 18 42 42 H 1.08998 * 117.52477 * 359.95204 * 22 20 18 43 43 H 1.09004 * 110.57790 * 262.01784 * 24 23 20 44 44 H 1.09003 * 110.58646 * 24.75860 * 24 23 20 45 45 H 1.09003 * 110.36096 * 142.68902 * 25 24 23 46 46 H 1.09002 * 110.35404 * 264.99235 * 25 24 23 47 47 H 1.09008 * 110.41725 * 280.87936 * 27 26 25 48 48 H 1.08996 * 110.42198 * 158.41977 * 27 26 25 49 49 H 1.07997 * 119.99934 * 179.72501 * 28 15 14 50 50 H 1.08001 * 119.99827 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8198 -0.0021 12 6 1.8173 -6.1249 -0.0026 13 6 2.1629 -6.7239 1.1944 14 6 2.8536 -7.9213 1.1938 15 6 3.1982 -8.5200 -0.0035 16 6 3.9516 -9.8251 -0.0040 17 7 2.9995 -10.9386 -0.0031 18 6 3.4487 -12.2092 -0.0039 19 8 4.6411 -12.4310 -0.0103 20 6 2.4694 -13.3547 -0.0035 21 1 1.5497 -13.1869 0.5570 22 6 2.3798 -14.2099 -1.2713 23 6 3.0378 -14.7655 -0.0154 24 6 4.5506 -15.0283 0.0565 25 6 4.6595 -16.3068 0.9206 26 8 3.3806 -16.9633 0.7746 27 6 2.3978 -15.9023 0.7969 28 6 2.8570 -7.9184 -1.2004 29 6 2.1624 -6.7232 -1.2000 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6853 -3.7149 0.8879 33 1 2.6841 -3.7142 -0.8920 34 1 0.4369 -4.7615 -0.8918 35 1 0.4375 -4.7626 0.8882 36 1 1.8933 -6.2563 2.1299 37 1 3.1240 -8.3891 2.1290 38 1 4.5790 -9.8828 0.8855 39 1 4.5776 -9.8830 -0.8945 40 1 2.0459 -10.7612 -0.0027 41 1 1.4014 -14.6052 -1.5441 42 1 3.0287 -13.9433 -2.1056 43 1 4.9568 -15.2035 -0.9398 44 1 5.0622 -14.1940 0.5363 45 1 5.4594 -16.9480 0.5501 46 1 4.8346 -16.0452 1.9642 47 1 2.2104 -15.5791 1.8210 48 1 1.4718 -16.2317 0.3257 49 1 3.1301 -8.3839 -2.1359 50 1 1.8918 -6.2555 -2.1351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713385653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:55 Heat of formation + Delta-G solvation = -44.641274 kcal Electronic energy + Delta-G solvation = -27991.496456 eV Core-core repulsion = 23983.451275 eV Total energy + Delta-G solvation = -4008.045181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61255 -40.58720 -39.74495 -37.29930 -36.77492 -35.96572 -34.30132 -32.58103 -31.85171 -31.27099 -30.03905 -28.47457 -27.15424 -25.53000 -24.36662 -23.68060 -23.64711 -23.07692 -21.61636 -21.51599 -20.50155 -19.23185 -18.22395 -17.52078 -17.07134 -16.86154 -16.84600 -16.58927 -16.33994 -16.17272 -15.97303 -15.81378 -15.41544 -15.13511 -15.06591 -14.86875 -14.64367 -14.27959 -13.85210 -13.72367 -13.55710 -13.51482 -13.48947 -13.14009 -12.95808 -12.87556 -12.53675 -12.37593 -12.35450 -12.14424 -12.03319 -11.93255 -11.81150 -11.69346 -11.47570 -11.10057 -10.96192 -10.77091 -10.49857 -10.12533 -9.82877 -9.54992 -9.03884 -7.97694 -5.27446 0.25302 0.49703 1.43850 1.46806 1.48546 1.57196 2.12467 2.54384 2.66042 2.86311 3.04149 3.35949 3.44763 3.60653 3.63459 3.75650 3.81878 3.87105 3.93708 4.07165 4.13840 4.17565 4.23738 4.37125 4.44654 4.45468 4.48488 4.51210 4.55912 4.67350 4.68509 4.73957 4.77884 4.78317 4.81074 4.87924 4.98671 5.05028 5.06124 5.10255 5.19011 5.24504 5.26101 5.44185 5.46309 5.49407 5.60987 5.77800 5.80865 6.06164 6.24763 6.52435 7.22203 7.30984 8.05286 8.29760 9.25707 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.041338 B = 0.001343 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.187166 B =20845.819637 C =21018.314207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.162 3.838 11 C -0.079 4.079 12 C -0.071 4.071 13 C -0.126 4.126 14 C -0.096 4.096 15 C -0.115 4.115 16 C 0.171 3.829 17 N -0.710 5.710 18 C 0.538 3.462 19 O -0.571 6.571 20 C -0.171 4.171 21 H 0.154 0.846 22 C -0.121 4.121 23 C -0.142 4.142 24 C -0.128 4.128 25 C 0.043 3.957 26 O -0.397 6.397 27 C 0.081 3.919 28 C -0.096 4.096 29 C -0.126 4.126 30 H 0.253 0.747 31 H 0.375 0.625 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.134 0.866 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.113 0.887 49 H 0.139 0.861 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 -34.673 0.168 34.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.048 3.952 17 N -0.361 5.361 18 C 0.326 3.674 19 O -0.451 6.451 20 C -0.191 4.191 21 H 0.172 0.828 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.166 4.166 25 C -0.033 4.033 26 O -0.316 6.316 27 C 0.005 3.995 28 C -0.114 4.114 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.251 0.749 41 H 0.152 0.848 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.131 0.869 49 H 0.157 0.843 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.981 -34.947 0.157 35.300 hybrid contribution -0.313 1.814 0.016 1.841 sum 4.667 -33.132 0.173 33.460 Atomic orbital electron populations 1.69810 1.06596 1.26225 1.59225 1.25584 0.96447 1.01128 1.03368 0.85124 0.77696 0.79297 0.77547 1.21236 1.21893 1.19514 1.19637 0.91498 0.85439 1.41742 0.90850 1.42584 1.05710 1.01193 1.89526 1.20698 0.93818 0.84504 0.97461 1.20638 0.97193 0.90846 1.03030 1.19905 0.97869 0.95231 0.94167 1.21219 0.99321 0.96096 0.97730 1.21198 0.97104 0.94827 0.98278 1.19776 1.01421 0.96854 0.93467 1.20046 0.90555 0.81802 1.02804 1.46000 1.11169 1.04538 1.74397 1.20096 0.88564 0.83840 0.74851 1.90612 1.18405 1.84585 1.51513 1.22215 1.01322 0.89372 1.06224 0.82795 1.23102 1.03629 0.99146 0.89939 1.22217 0.96132 0.93496 1.02431 1.22621 0.94096 0.98674 1.01166 1.23582 0.86565 0.93629 0.99525 1.89131 1.16964 1.30807 1.94733 1.22959 0.92406 0.84869 0.99303 1.21196 0.97089 0.94835 0.98283 1.21217 0.99294 0.96128 0.97729 0.93862 0.79292 0.96504 0.96512 0.90951 0.90950 0.85526 0.84258 0.90901 0.90972 0.74945 0.84773 0.88805 0.91491 0.88498 0.88328 0.91781 0.90771 0.86922 0.84299 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -38.58 5.60 -343.45 -1.92 -40.51 16 10 C 0.16 6.55 6.24 86.38 0.54 7.09 16 11 C -0.08 -2.50 5.46 29.85 0.16 -2.34 16 12 C -0.07 -1.82 5.13 -19.87 -0.10 -1.93 16 13 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 14 C -0.10 -1.73 9.70 22.27 0.22 -1.51 16 15 C -0.11 -1.92 5.25 -19.87 -0.10 -2.03 16 16 C 0.17 2.58 5.80 85.63 0.50 3.07 16 17 N -0.71 -8.81 5.55 -466.79 -2.59 -11.40 16 18 C 0.54 8.32 7.61 87.66 0.67 8.98 16 19 O -0.57 -12.99 13.34 -3.04 -0.04 -13.03 16 20 C -0.17 -1.66 6.08 -11.77 -0.07 -1.73 16 21 H 0.15 0.65 8.14 -2.38 -0.02 0.63 16 22 C -0.12 -1.06 10.01 30.42 0.30 -0.76 16 23 C -0.14 -1.71 2.51 -52.25 -0.13 -1.84 16 24 C -0.13 -2.03 5.98 31.41 0.19 -1.84 16 25 C 0.04 0.62 7.65 72.56 0.56 1.17 16 26 O -0.40 -6.67 11.65 -148.98 -1.74 -8.41 16 27 C 0.08 0.88 7.44 72.21 0.54 1.42 16 28 C -0.10 -1.74 9.70 22.27 0.22 -1.52 16 29 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 32 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 36 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 39 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 40 H 0.41 3.49 8.46 -92.71 -0.78 2.71 16 41 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 1.93 5.44 -2.39 -0.01 1.91 16 45 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 48 H 0.11 0.77 8.12 -2.39 -0.02 0.75 16 49 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 50 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.57 413.22 0.69 -70.88 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.55 Total: 29.44 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.21 Total: -16.19 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.23 Total: -110.87 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.78 Total: -21.44 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.57 0.69 -70.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713385653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.242 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds