Wall clock time and date at job start Wed Apr 1 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48495 * 109.46982 * 95.01205 * 3 2 1 5 5 H 1.48499 * 109.47145 * 215.01210 * 3 2 1 6 6 H 1.48496 * 109.46922 * 335.01212 * 3 2 1 7 7 C 1.38817 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99598 * 173.14999 * 7 2 1 9 9 N 1.36929 * 119.99830 * 353.14454 * 7 2 1 10 10 C 1.47025 * 125.65197 * 5.74989 * 9 7 2 11 11 C 1.54332 * 107.26803 * 178.84694 * 10 9 7 12 12 C 1.55157 * 103.01782 * 338.13617 * 11 10 9 13 13 H 1.09000 * 111.00728 * 277.23337 * 12 11 10 14 14 C 1.53002 * 111.03609 * 153.39854 * 12 11 10 15 15 C 1.53007 * 109.47111 * 181.32892 * 14 12 11 16 16 N 1.46498 * 109.46982 * 179.97438 * 15 14 12 17 17 C 1.34775 * 119.99859 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00104 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99780 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.46861 * 180.02562 * 19 17 16 21 21 H 1.09007 * 110.13156 * 306.69739 * 20 19 17 22 22 O 1.43945 * 110.16058 * 68.46891 * 20 19 17 23 23 C 1.43937 * 104.95105 * 147.56493 * 22 20 19 24 24 C 1.51086 * 105.95710 * 331.55433 * 23 22 20 25 25 C 1.37966 * 132.68347 * 197.68521 * 24 23 22 26 26 C 1.38303 * 119.91263 * 180.02562 * 25 24 23 27 27 C 1.38254 * 120.04437 * 359.97438 * 26 25 24 28 28 C 1.38299 * 120.04308 * 0.03624 * 27 26 25 29 29 C 1.37974 * 119.91443 * 359.96105 * 28 27 26 30 30 C 1.47427 * 125.64612 * 186.04865 * 9 7 2 31 31 H 0.96992 * 120.00787 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.87561 * 298.38929 * 10 9 7 33 33 H 1.09000 * 109.88314 * 59.54842 * 10 9 7 34 34 H 1.09004 * 110.85102 * 219.67202 * 11 10 9 35 35 H 1.08996 * 110.67046 * 96.51585 * 11 10 9 36 36 H 1.09001 * 109.46963 * 301.32891 * 14 12 11 37 37 H 1.09003 * 109.47233 * 61.32853 * 14 12 11 38 38 H 1.08991 * 109.47207 * 299.99813 * 15 14 12 39 39 H 1.08996 * 109.46734 * 60.00454 * 15 14 12 40 40 H 0.97008 * 120.00278 * 0.02562 * 16 15 14 41 41 H 1.09001 * 109.47035 * 299.99768 * 19 17 16 42 42 H 1.08994 * 109.47356 * 60.00031 * 19 17 16 43 43 H 1.09007 * 110.15476 * 212.43630 * 23 22 20 44 44 H 1.08996 * 110.21575 * 90.71052 * 23 22 20 45 45 H 1.07992 * 120.04433 * 0.04186 * 25 24 23 46 46 H 1.07997 * 119.97255 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.98434 * 179.97438 * 27 26 25 48 48 H 1.07992 * 120.04272 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.36594 * 322.93496 * 30 9 7 50 50 H 1.08993 * 110.36560 * 85.15100 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6035 1.9853 1.3947 5 1 3.4907 1.4732 -0.8033 6 1 1.3986 2.6809 -0.5914 7 6 2.0103 -1.2022 -0.0005 8 1 3.0845 -1.2053 -0.1121 9 7 1.3330 -2.3838 0.1405 10 6 -0.1290 -2.5340 0.1811 11 6 -0.4310 -4.0410 0.3218 12 6 0.8658 -4.7082 -0.2077 13 1 0.8570 -4.7704 -1.2959 14 6 1.0661 -6.0909 0.4159 15 6 2.3691 -6.7013 -0.1046 16 7 2.5611 -8.0250 0.4931 17 6 3.6499 -8.7546 0.1789 18 8 4.4708 -8.3152 -0.5983 19 6 3.8471 -10.1166 0.7932 20 6 5.1507 -10.7263 0.2738 21 1 5.1612 -10.7167 -0.8162 22 8 6.2795 -9.9962 0.7884 23 6 7.3217 -10.9782 0.9343 24 6 6.6211 -12.2933 1.1846 25 6 7.0512 -13.4991 1.6989 26 6 6.1656 -14.5552 1.8135 27 6 4.8509 -14.4026 1.4136 28 6 4.4199 -13.1940 0.8978 29 6 5.3034 -12.1404 0.7835 30 6 1.9491 -3.7156 0.2829 31 1 -0.4851 0.8399 0.0004 32 1 -0.5337 -1.9915 1.0355 33 1 -0.5664 -2.1548 -0.7424 34 1 -1.2877 -4.3238 -0.2899 35 1 -0.6010 -4.3034 1.3660 36 1 1.1171 -5.9963 1.5006 37 1 0.2297 -6.7358 0.1464 38 1 2.3181 -6.7959 -1.1892 39 1 3.2054 -6.0565 0.1651 40 1 1.9047 -8.3763 1.1149 41 1 3.8976 -10.0220 1.8780 42 1 3.0110 -10.7615 0.5233 43 1 7.9599 -10.7256 1.7811 44 1 7.9148 -11.0364 0.0217 45 1 8.0779 -13.6181 2.0119 46 1 6.5010 -15.4994 2.2163 47 1 4.1603 -15.2281 1.5031 48 1 3.3929 -13.0747 0.5858 49 1 2.8411 -3.7894 -0.3392 50 1 2.1982 -3.9086 1.3263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713740150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:27 Heat of formation + Delta-G solvation = -30.501021 kcal Electronic energy + Delta-G solvation = -28775.248938 eV Core-core repulsion = 24767.816924 eV Total energy + Delta-G solvation = -4007.432014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.24636 -39.57977 -37.84815 -37.58999 -35.16058 -33.20095 -32.86292 -31.68970 -31.04874 -30.27827 -28.93278 -27.03310 -26.11499 -24.86166 -24.28041 -22.37997 -22.00337 -21.46321 -20.43186 -19.94048 -19.36717 -17.66357 -16.98800 -16.86020 -16.61899 -16.26671 -15.96735 -15.63129 -15.39629 -15.11275 -14.64669 -14.48545 -14.12392 -13.90068 -13.77607 -13.63448 -13.33428 -13.17271 -12.67000 -12.53244 -12.41421 -12.26895 -12.02263 -11.88621 -11.76640 -11.70250 -11.49197 -11.32735 -11.05641 -10.82991 -10.71749 -10.33864 -10.09686 -10.06274 -9.91732 -9.78088 -9.70351 -9.55298 -9.37168 -9.04307 -9.00343 -8.52103 -6.75340 -5.66466 -2.98219 0.75363 0.84795 2.62007 3.06610 3.23154 3.44860 3.49699 3.51296 3.52744 3.75856 4.18326 4.39071 4.52023 4.55784 4.58238 4.71438 4.86613 4.94449 4.96251 5.00838 5.04815 5.11432 5.15376 5.29579 5.35289 5.40271 5.50578 5.51827 5.54272 5.66091 5.72015 5.80527 5.87579 5.92274 5.95310 5.97488 6.06655 6.17963 6.26630 6.38283 6.43402 6.46177 6.48618 6.60061 6.65217 6.79470 7.03292 7.45282 7.62675 7.69765 7.88417 8.20701 8.32781 9.28661 9.89410 10.56540 11.45816 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.001626 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.782215 B =17213.525446 C =18130.011736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.115 4.115 15 C 0.118 3.882 16 N -0.732 5.732 17 C 0.511 3.489 18 O -0.528 6.528 19 C -0.138 4.138 20 C 0.139 3.861 21 H 0.094 0.906 22 O -0.339 6.339 23 C 0.086 3.914 24 C -0.128 4.128 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.092 4.092 29 C -0.127 4.127 30 C 0.140 3.860 31 H 0.251 0.749 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.398 0.602 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.037 0.963 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 -33.112 4.240 34.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.005 4.005 16 N -0.384 5.384 17 C 0.296 3.704 18 O -0.403 6.403 19 C -0.178 4.178 20 C 0.081 3.919 21 H 0.111 0.889 22 O -0.257 6.257 23 C 0.010 3.990 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.110 4.110 29 C -0.127 4.127 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.055 0.945 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.897 -32.285 3.685 33.440 hybrid contribution 0.060 0.478 0.345 0.592 sum 7.957 -31.807 4.030 33.034 Atomic orbital electron populations 1.69976 1.04900 1.24979 1.57067 1.24816 0.95702 0.97631 1.02361 0.86163 0.78639 0.83521 0.77648 1.21596 1.20748 1.21752 1.19071 0.91128 0.82664 1.42712 0.90481 1.44484 1.01700 1.01188 1.85933 1.21140 0.84474 0.88464 1.00753 1.22896 0.95950 0.99274 0.99521 1.22270 0.97615 0.92350 0.99823 0.90645 1.21735 0.95824 0.96847 1.00939 1.21482 0.98679 0.82357 0.98023 1.46082 1.24580 1.19344 1.48364 1.20415 0.81263 0.86771 0.81942 1.90752 1.42746 1.71860 1.34986 1.21821 0.97876 0.94975 1.03152 1.21033 0.86785 0.85492 0.98627 0.88863 1.89257 1.21384 1.29323 1.85777 1.21800 0.90982 0.84049 1.02190 1.21135 0.95536 0.96460 0.99649 1.20432 1.00115 0.91552 0.99239 1.21167 0.93613 0.98682 0.99849 1.21161 0.96184 0.97186 0.98931 1.20447 0.99227 0.91924 0.99370 1.21058 0.95057 0.96373 1.00199 1.21605 0.94238 0.85865 0.96939 0.93830 0.93864 0.94038 0.92394 0.92609 0.91349 0.91746 0.91527 0.90925 0.76826 0.87885 0.87576 0.88458 0.90360 0.85648 0.85445 0.85383 0.85579 0.94474 0.96483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 10.36 55.49 0.57 -27.13 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 3 Si 0.91 22.71 29.56 -169.99 -5.02 17.69 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.23 -6.57 10.26 -15.06 -0.15 -6.72 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.61 -16.01 3.39 -170.07 -0.58 -16.59 16 10 C 0.18 4.37 5.38 -3.06 -0.02 4.35 16 11 C -0.14 -2.54 6.42 -24.89 -0.16 -2.70 16 12 C -0.10 -1.71 3.07 -88.47 -0.27 -1.98 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.12 -1.45 4.85 -26.73 -0.13 -1.58 16 15 C 0.12 1.54 5.52 -4.04 -0.02 1.51 16 16 N -0.73 -7.75 5.56 -60.30 -0.33 -8.09 16 17 C 0.51 6.22 7.74 -10.98 -0.09 6.14 16 18 O -0.53 -8.89 15.57 -3.42 -0.05 -8.95 16 19 C -0.14 -1.16 5.36 -27.88 -0.15 -1.31 16 20 C 0.14 1.38 2.84 -27.70 -0.08 1.30 16 21 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 22 O -0.34 -4.15 10.89 -44.21 -0.48 -4.63 16 23 C 0.09 0.76 7.63 36.19 0.28 1.03 16 24 C -0.13 -1.06 6.32 -104.40 -0.66 -1.72 16 25 C -0.10 -0.63 10.04 -39.66 -0.40 -1.03 16 26 C -0.12 -0.66 10.05 -39.55 -0.40 -1.06 16 27 C -0.12 -0.66 10.05 -39.55 -0.40 -1.06 16 28 C -0.09 -0.60 9.78 -39.66 -0.39 -0.99 16 29 C -0.13 -1.06 5.72 -104.40 -0.60 -1.66 16 30 C 0.14 2.96 5.89 -2.53 -0.01 2.94 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.04 1.18 7.39 -51.93 -0.38 0.80 16 33 H 0.04 1.13 7.53 -51.93 -0.39 0.74 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.11 7.46 -51.93 -0.39 0.73 16 40 H 0.40 2.91 8.47 -40.82 -0.35 2.56 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.11 0.56 7.82 -51.93 -0.41 0.15 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 47 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.13 0.56 7.86 -52.49 -0.41 0.15 16 49 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 50 H 0.02 0.37 8.01 -51.93 -0.42 -0.05 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -35.94 403.05 -11.75 -47.69 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.18 Total: -1.19 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.74 Total: -4.88 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.34 Total: -51.80 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.53 Total: -13.58 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.94 -11.75 -47.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713740150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.192 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds