Wall clock time and date at job start Wed Apr 1 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48495 * 109.46982 * 95.01205 * 3 2 1 5 5 H 1.48499 * 109.47145 * 215.01210 * 3 2 1 6 6 H 1.48496 * 109.46922 * 335.01212 * 3 2 1 7 7 C 1.38817 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99598 * 173.14999 * 7 2 1 9 9 N 1.36929 * 119.99830 * 353.14454 * 7 2 1 10 10 C 1.47025 * 125.65197 * 5.74989 * 9 7 2 11 11 C 1.54332 * 107.26803 * 178.84694 * 10 9 7 12 12 C 1.55157 * 103.01782 * 338.13617 * 11 10 9 13 13 H 1.09000 * 111.00728 * 277.23337 * 12 11 10 14 14 C 1.53002 * 111.03609 * 153.39854 * 12 11 10 15 15 C 1.53007 * 109.47111 * 181.32892 * 14 12 11 16 16 N 1.46498 * 109.46982 * 179.97438 * 15 14 12 17 17 C 1.34775 * 119.99859 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00104 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99780 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.46861 * 180.02562 * 19 17 16 21 21 H 1.09007 * 110.13156 * 306.69739 * 20 19 17 22 22 O 1.43945 * 110.16058 * 68.46891 * 20 19 17 23 23 C 1.43937 * 104.95105 * 147.56493 * 22 20 19 24 24 C 1.51086 * 105.95710 * 331.55433 * 23 22 20 25 25 C 1.37966 * 132.68347 * 197.68521 * 24 23 22 26 26 C 1.38303 * 119.91263 * 180.02562 * 25 24 23 27 27 C 1.38254 * 120.04437 * 359.97438 * 26 25 24 28 28 C 1.38299 * 120.04308 * 0.03624 * 27 26 25 29 29 C 1.37974 * 119.91443 * 359.96105 * 28 27 26 30 30 C 1.47427 * 125.64612 * 186.04865 * 9 7 2 31 31 H 0.96992 * 120.00787 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.87561 * 298.38929 * 10 9 7 33 33 H 1.09000 * 109.88314 * 59.54842 * 10 9 7 34 34 H 1.09004 * 110.85102 * 219.67202 * 11 10 9 35 35 H 1.08996 * 110.67046 * 96.51585 * 11 10 9 36 36 H 1.09001 * 109.46963 * 301.32891 * 14 12 11 37 37 H 1.09003 * 109.47233 * 61.32853 * 14 12 11 38 38 H 1.08991 * 109.47207 * 299.99813 * 15 14 12 39 39 H 1.08996 * 109.46734 * 60.00454 * 15 14 12 40 40 H 0.97008 * 120.00278 * 0.02562 * 16 15 14 41 41 H 1.09001 * 109.47035 * 299.99768 * 19 17 16 42 42 H 1.08994 * 109.47356 * 60.00031 * 19 17 16 43 43 H 1.09007 * 110.15476 * 212.43630 * 23 22 20 44 44 H 1.08996 * 110.21575 * 90.71052 * 23 22 20 45 45 H 1.07992 * 120.04433 * 0.04186 * 25 24 23 46 46 H 1.07997 * 119.97255 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.98434 * 179.97438 * 27 26 25 48 48 H 1.07992 * 120.04272 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.36594 * 322.93496 * 30 9 7 50 50 H 1.08993 * 110.36560 * 85.15100 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6035 1.9853 1.3947 5 1 3.4907 1.4732 -0.8033 6 1 1.3986 2.6809 -0.5914 7 6 2.0103 -1.2022 -0.0005 8 1 3.0845 -1.2053 -0.1121 9 7 1.3330 -2.3838 0.1405 10 6 -0.1290 -2.5340 0.1811 11 6 -0.4310 -4.0410 0.3218 12 6 0.8658 -4.7082 -0.2077 13 1 0.8570 -4.7704 -1.2959 14 6 1.0661 -6.0909 0.4159 15 6 2.3691 -6.7013 -0.1046 16 7 2.5611 -8.0250 0.4931 17 6 3.6499 -8.7546 0.1789 18 8 4.4708 -8.3152 -0.5983 19 6 3.8471 -10.1166 0.7932 20 6 5.1507 -10.7263 0.2738 21 1 5.1612 -10.7167 -0.8162 22 8 6.2795 -9.9962 0.7884 23 6 7.3217 -10.9782 0.9343 24 6 6.6211 -12.2933 1.1846 25 6 7.0512 -13.4991 1.6989 26 6 6.1656 -14.5552 1.8135 27 6 4.8509 -14.4026 1.4136 28 6 4.4199 -13.1940 0.8978 29 6 5.3034 -12.1404 0.7835 30 6 1.9491 -3.7156 0.2829 31 1 -0.4851 0.8399 0.0004 32 1 -0.5337 -1.9915 1.0355 33 1 -0.5664 -2.1548 -0.7424 34 1 -1.2877 -4.3238 -0.2899 35 1 -0.6010 -4.3034 1.3660 36 1 1.1171 -5.9963 1.5006 37 1 0.2297 -6.7358 0.1464 38 1 2.3181 -6.7959 -1.1892 39 1 3.2054 -6.0565 0.1651 40 1 1.9047 -8.3763 1.1149 41 1 3.8976 -10.0220 1.8780 42 1 3.0110 -10.7615 0.5233 43 1 7.9599 -10.7256 1.7811 44 1 7.9148 -11.0364 0.0217 45 1 8.0779 -13.6181 2.0119 46 1 6.5010 -15.4994 2.2163 47 1 4.1603 -15.2281 1.5031 48 1 3.3929 -13.0747 0.5858 49 1 2.8411 -3.7894 -0.3392 50 1 2.1982 -3.9086 1.3263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713740150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:25 Heat of formation + Delta-G solvation = -53.595491 kcal Electronic energy + Delta-G solvation = -28776.250389 eV Core-core repulsion = 24767.816924 eV Total energy + Delta-G solvation = -4008.433465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87536 -40.53197 -39.38595 -38.26486 -36.41949 -34.73970 -33.78386 -32.49749 -32.23602 -31.17530 -30.54187 -28.30723 -27.21277 -26.37908 -25.15251 -23.62334 -22.55711 -22.21675 -21.78673 -21.39622 -20.68347 -18.87516 -18.42603 -17.64889 -17.35504 -17.14903 -16.88832 -16.64636 -16.44065 -16.33358 -16.06116 -15.57498 -15.41679 -14.94593 -14.78333 -14.56360 -14.15181 -13.93385 -13.83698 -13.75684 -13.67465 -13.40137 -13.20849 -13.15950 -13.03386 -12.81882 -12.69459 -12.65478 -12.23241 -12.19383 -12.02603 -11.80884 -11.78623 -11.55849 -11.40175 -11.31220 -11.04979 -10.84377 -10.69713 -10.04438 -9.83613 -9.54868 -8.88735 -7.87604 -5.21651 0.26614 0.39652 1.43043 1.45803 1.53834 1.69349 2.20755 2.48283 2.74228 2.87160 3.20691 3.29928 3.56065 3.67584 3.76970 3.79987 3.95087 3.99819 4.07922 4.16460 4.23019 4.25449 4.36809 4.39118 4.40734 4.44108 4.51693 4.62521 4.63395 4.70895 4.76229 4.79524 4.82724 4.89465 4.92182 5.00808 5.09823 5.14428 5.18195 5.26960 5.40743 5.44548 5.44811 5.50293 5.52843 5.55241 5.71660 5.78133 5.78880 6.00880 6.20245 6.62348 7.10223 7.33625 7.78221 8.43032 9.23096 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.001626 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.782215 B =17213.525446 C =18130.011736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.072 0.928 14 C -0.097 4.097 15 C 0.123 3.877 16 N -0.716 5.716 17 C 0.506 3.494 18 O -0.583 6.583 19 C -0.127 4.127 20 C 0.134 3.866 21 H 0.073 0.927 22 O -0.375 6.375 23 C 0.081 3.919 24 C -0.146 4.146 25 C -0.103 4.103 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.095 4.095 29 C -0.140 4.140 30 C 0.134 3.866 31 H 0.247 0.753 32 H 0.007 0.993 33 H 0.004 0.996 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.419 0.581 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.141 0.859 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.149 0.851 49 H 0.029 0.971 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -36.467 5.478 37.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.135 4.135 15 C -0.001 4.001 16 N -0.369 5.369 17 C 0.293 3.707 18 O -0.463 6.463 19 C -0.166 4.166 20 C 0.076 3.924 21 H 0.091 0.909 22 O -0.294 6.294 23 C 0.004 3.996 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.112 4.112 29 C -0.141 4.141 30 C 0.009 3.991 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.256 0.744 41 H 0.134 0.866 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.159 0.841 46 H 0.170 0.830 47 H 0.172 0.828 48 H 0.166 0.834 49 H 0.047 0.953 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.114 -35.691 4.954 36.728 hybrid contribution 0.354 1.477 -0.047 1.519 sum 7.468 -34.214 4.908 35.362 Atomic orbital electron populations 1.70195 1.06236 1.25326 1.57971 1.25672 0.96667 1.00992 1.02534 0.85115 0.77568 0.79079 0.77718 1.21065 1.19699 1.21746 1.19442 0.91516 0.84266 1.42474 0.90562 1.44837 1.02732 1.02377 1.85797 1.20967 0.83556 0.92688 0.97322 1.22757 0.97398 0.94228 1.01549 1.22163 0.94841 0.93720 0.99861 0.90995 1.21580 0.96564 0.94260 1.01111 1.21236 0.97989 0.83217 0.97685 1.45891 1.24719 1.18157 1.48150 1.21125 0.80563 0.87923 0.81071 1.90733 1.44684 1.73258 1.37576 1.21855 0.98435 0.92955 1.03365 1.21039 0.86894 0.86762 0.97668 0.90913 1.89205 1.22881 1.31348 1.85945 1.21909 0.90654 0.84366 1.02627 1.21196 0.95726 0.96714 1.01027 1.20707 1.01289 0.91179 0.98961 1.21545 0.93608 0.99261 0.99056 1.21547 0.96674 0.97537 0.97837 1.20758 1.00026 0.91554 0.98908 1.21002 0.95686 0.95952 1.01435 1.21814 0.95302 0.84871 0.97154 0.94341 0.97478 0.97749 0.89782 0.90509 0.90173 0.88162 0.92508 0.93848 0.74406 0.86554 0.83742 0.87562 0.90404 0.84128 0.83018 0.82763 0.83355 0.95308 0.95940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 10.36 21.65 0.22 -58.75 16 2 C -0.07 -3.90 5.48 84.86 0.47 -3.43 16 3 Si 0.98 47.67 29.56 68.60 2.03 49.70 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.25 -14.72 10.26 84.04 0.86 -13.86 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.63 -34.14 3.39 -691.97 -2.35 -36.49 16 10 C 0.18 9.12 5.38 86.73 0.47 9.58 16 11 C -0.12 -4.23 6.42 31.79 0.20 -4.03 16 12 C -0.09 -2.78 3.07 -9.40 -0.03 -2.81 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.10 -2.12 4.85 30.60 0.15 -1.97 16 15 C 0.12 3.04 5.52 86.38 0.48 3.52 16 16 N -0.72 -13.60 5.56 -463.06 -2.57 -16.18 16 17 C 0.51 11.92 7.74 87.66 0.68 12.60 16 18 O -0.58 -20.28 15.57 5.55 0.09 -20.19 16 19 C -0.13 -1.90 5.36 29.85 0.16 -1.74 16 20 C 0.13 2.68 2.84 29.97 0.09 2.76 16 21 H 0.07 1.67 7.92 -2.38 -0.02 1.65 16 22 O -0.37 -9.58 10.89 -140.40 -1.53 -11.11 16 23 C 0.08 1.48 7.63 71.36 0.54 2.03 16 24 C -0.15 -2.36 6.32 -19.72 -0.12 -2.48 16 25 C -0.10 -1.21 10.04 22.22 0.22 -0.98 16 26 C -0.12 -1.01 10.05 22.29 0.22 -0.78 16 27 C -0.12 -0.96 10.05 22.29 0.22 -0.73 16 28 C -0.09 -0.98 9.78 22.22 0.22 -0.77 16 29 C -0.14 -2.20 5.72 -19.72 -0.11 -2.31 16 30 C 0.13 5.68 5.89 86.86 0.51 6.19 16 31 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.01 0.40 7.39 -2.39 -0.02 0.38 16 33 H 0.00 0.24 7.53 -2.39 -0.02 0.22 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 36 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.34 7.46 -2.39 -0.02 1.32 16 40 H 0.42 4.51 8.47 -92.70 -0.79 3.73 16 41 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.14 1.00 7.82 -2.39 -0.02 0.98 16 43 H 0.11 1.61 8.14 -2.38 -0.02 1.60 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.15 0.51 8.06 -2.91 -0.02 0.48 16 47 H 0.15 0.40 8.06 -2.91 -0.02 0.38 16 48 H 0.15 0.77 7.86 -2.91 -0.02 0.74 16 49 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 50 H 0.02 0.95 8.01 -2.39 -0.02 0.93 16 Total: -1.00 -83.79 403.05 1.26 -82.53 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.14 Total: 9.72 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.23 Total: 0.77 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -4.70 Total: -111.41 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.44 Total: -31.30 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -83.79 1.26 -82.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713740150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.938 kcal (2) G-P(sol) polarization free energy of solvation -83.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds