Wall clock time and date at job start Wed Apr 1 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47430 * 274.06942 * 3 2 1 5 5 H 1.48504 * 109.46970 * 34.07015 * 3 2 1 6 6 H 1.48498 * 109.47083 * 154.06567 * 3 2 1 7 7 C 1.38810 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00113 * 197.51848 * 7 2 1 9 9 N 1.36940 * 120.00313 * 17.52835 * 7 2 1 10 10 C 1.46922 * 120.62919 * 207.99749 * 9 7 2 11 11 C 1.53190 * 108.77534 * 233.62385 * 10 9 7 12 12 C 1.53036 * 109.31682 * 305.37018 * 11 10 9 13 13 C 1.52995 * 109.46194 * 181.38487 * 12 11 10 14 14 C 1.53001 * 109.47005 * 174.96940 * 13 12 11 15 15 N 1.46502 * 109.47262 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00033 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00289 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99621 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.83009 * 303.69524 * 18 16 15 20 20 C 1.54705 * 110.97022 * 67.42445 * 18 16 15 21 21 O 1.43777 * 102.77576 * 92.94668 * 20 18 16 22 22 C 1.36139 * 109.20640 * 27.89081 * 21 20 18 23 23 C 1.39281 * 129.89810 * 161.19078 * 22 21 20 24 24 C 1.37938 * 120.23542 * 179.07728 * 23 22 21 25 25 C 1.38279 * 120.34989 * 359.97438 * 24 23 22 26 26 C 1.38348 * 119.77123 * 0.43722 * 25 24 23 27 27 C 1.37739 * 119.97510 * 359.51055 * 26 25 24 28 28 C 1.53044 * 109.52759 * 61.36638 * 12 11 10 29 29 C 1.46922 * 120.62951 * 28.01370 * 9 7 2 30 30 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58680 * 113.84056 * 10 9 7 32 32 H 1.08998 * 109.70605 * 353.48625 * 10 9 7 33 33 H 1.08998 * 109.50008 * 185.41254 * 11 10 9 34 34 H 1.09004 * 109.52319 * 65.33313 * 11 10 9 35 35 H 1.09006 * 109.45424 * 301.35511 * 12 11 10 36 36 H 1.08994 * 109.47297 * 54.97214 * 13 12 11 37 37 H 1.09002 * 109.47147 * 294.96885 * 13 12 11 38 38 H 1.09003 * 109.47082 * 59.99900 * 14 13 12 39 39 H 1.08994 * 109.47345 * 299.99765 * 14 13 12 40 40 H 0.96997 * 119.99988 * 359.97438 * 15 14 13 41 41 H 1.08996 * 110.74970 * 211.27036 * 20 18 16 42 42 H 1.09000 * 110.75039 * 334.44099 * 20 18 16 43 43 H 1.08003 * 119.88291 * 359.06535 * 23 22 21 44 44 H 1.08001 * 119.82276 * 179.97438 * 24 23 22 45 45 H 1.08011 * 120.11455 * 180.15599 * 25 24 23 46 46 H 1.08000 * 120.01121 * 179.75126 * 26 25 24 47 47 H 1.08996 * 109.49471 * 58.58649 * 28 12 11 48 48 H 1.09003 * 109.49324 * 178.67904 * 28 12 11 49 49 H 1.09001 * 109.58935 * 246.15812 * 29 9 7 50 50 H 1.09001 * 109.58630 * 6.44595 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5881 1.4168 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2241 0.2810 9 7 1.3732 -2.3604 -0.3582 10 6 1.8145 -3.6543 0.1800 11 6 2.0773 -4.6103 -0.9878 12 6 0.8282 -4.6889 -1.8685 13 6 1.0751 -5.6695 -3.0168 14 6 -0.2128 -5.8438 -3.8243 15 7 0.0237 -6.7822 -4.9241 16 6 -0.9761 -7.0902 -5.7739 17 8 -2.0716 -6.5908 -5.6278 18 6 -0.7329 -8.0559 -6.9049 19 1 0.0940 -7.7199 -7.5305 20 6 -0.4751 -9.4837 -6.3680 21 8 -1.7865 -10.0727 -6.3884 22 6 -2.5285 -9.4801 -7.3640 23 6 -3.6910 -9.9190 -7.9931 24 6 -4.2963 -9.1391 -8.9565 25 6 -3.7555 -7.9154 -9.3059 26 6 -2.5963 -7.4760 -8.6918 27 6 -1.9908 -8.2527 -7.7288 28 6 0.5166 -3.3035 -2.4392 29 6 0.2357 -2.3328 -1.2877 30 1 -0.4850 0.8400 0.0004 31 1 1.0367 -4.0673 0.8224 32 1 2.7304 -3.5199 0.7555 33 1 2.3124 -5.6017 -0.6006 34 1 2.9162 -4.2421 -1.5784 35 1 -0.0159 -5.0340 -1.2714 36 1 1.3831 -6.6333 -2.6116 37 1 1.8603 -5.2799 -3.6647 38 1 -0.5209 -4.8799 -4.2294 39 1 -0.9979 -6.2333 -3.1764 40 1 0.9000 -7.1813 -5.0412 41 1 0.2027 -10.0273 -7.0262 42 1 -0.0800 -9.4491 -5.3528 43 1 -4.1200 -10.8735 -7.7259 44 1 -5.1973 -9.4862 -9.4404 45 1 -4.2340 -7.3066 -10.0590 46 1 -2.1684 -6.5227 -8.9646 47 1 1.3702 -2.9472 -3.0157 48 1 -0.3593 -3.3647 -3.0851 49 1 -0.6708 -2.6381 -0.7651 50 1 0.1091 -1.3239 -1.6803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714331753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:49 Heat of formation + Delta-G solvation = -29.106775 kcal Electronic energy + Delta-G solvation = -29441.392952 eV Core-core repulsion = 25434.021397 eV Total energy + Delta-G solvation = -4007.371555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.80245 -39.43387 -37.98306 -37.69692 -35.44818 -33.67927 -33.12306 -31.35882 -30.39001 -29.84662 -29.76346 -28.46892 -25.42868 -24.37605 -23.23259 -22.71024 -22.29847 -21.86250 -20.92881 -20.28894 -19.07533 -18.08924 -17.26497 -17.05565 -16.76094 -16.38162 -15.82524 -15.71822 -15.34593 -14.80478 -14.40039 -14.23516 -13.92342 -13.83946 -13.66959 -13.47659 -13.39652 -13.31087 -12.97500 -12.92361 -12.50581 -12.27492 -12.07344 -12.02052 -11.57243 -11.53901 -11.37500 -11.20444 -11.12643 -10.91116 -10.71587 -10.45935 -10.22278 -10.13293 -10.04876 -9.86113 -9.47342 -9.37446 -9.20152 -9.15407 -8.48198 -8.43991 -6.63757 -5.76144 -3.18391 0.95341 1.09942 2.33126 2.87226 2.91175 3.38633 3.45570 3.47027 3.48400 3.80023 4.09151 4.40354 4.49515 4.51574 4.74204 4.76668 4.86344 4.93076 4.95962 5.05148 5.08567 5.19247 5.27880 5.30003 5.39565 5.48088 5.63950 5.67243 5.71789 5.80298 5.99457 6.00453 6.02191 6.08832 6.11009 6.18685 6.22941 6.25990 6.31937 6.37361 6.53628 6.65187 6.73686 6.82928 6.83672 6.89287 7.02427 7.27124 7.41544 7.70137 7.82006 8.00713 8.48182 9.24349 9.88277 10.45377 11.32198 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.001851 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.227566 B =15124.892115 C =15916.986267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.126 4.126 12 C -0.075 4.075 13 C -0.124 4.124 14 C 0.116 3.884 15 N -0.728 5.728 16 C 0.519 3.481 17 O -0.520 6.520 18 C -0.103 4.103 19 H 0.123 0.877 20 C 0.064 3.936 21 O -0.300 6.300 22 C 0.111 3.889 23 C -0.140 4.140 24 C -0.082 4.082 25 C -0.149 4.149 26 C -0.053 4.053 27 C -0.149 4.149 28 C -0.137 4.137 29 C 0.170 3.830 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.017 0.983 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 -21.866 -18.758 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.165 4.165 12 C -0.095 4.095 13 C -0.162 4.162 14 C -0.006 4.006 15 N -0.380 5.380 16 C 0.303 3.697 17 O -0.394 6.394 18 C -0.125 4.125 19 H 0.141 0.859 20 C -0.012 4.012 21 O -0.214 6.214 22 C 0.066 3.934 23 C -0.159 4.159 24 C -0.100 4.100 25 C -0.167 4.167 26 C -0.071 4.071 27 C -0.150 4.150 28 C -0.177 4.177 29 C 0.044 3.956 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.035 0.965 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.191 -21.506 -18.437 28.412 hybrid contribution 1.002 0.891 -0.033 1.342 sum -1.189 -20.615 -18.470 27.705 Atomic orbital electron populations 1.70045 1.05249 1.25438 1.53922 1.25048 0.95276 0.98416 1.01044 0.86286 0.79151 0.83833 0.77576 1.21519 1.21806 1.20427 1.19199 0.92708 0.84986 1.41237 0.91756 1.44056 1.36485 1.01378 1.49619 1.20885 0.97461 0.87022 0.92810 1.22034 0.97014 0.98789 0.98645 1.20974 0.98616 0.95037 0.94825 1.21893 0.96233 1.00155 0.97882 1.21572 0.98593 0.92957 0.87505 1.46065 1.13648 1.47592 1.30719 1.20100 0.84753 0.82155 0.82688 1.90759 1.23723 1.52483 1.72482 1.21594 0.98615 0.96355 0.95916 0.85915 1.23808 0.84172 0.89658 1.03562 1.86859 1.23773 1.60442 1.50291 1.19542 0.93757 0.91258 0.88867 1.20243 0.95481 1.01696 0.98456 1.20896 0.99058 0.94053 0.95989 1.21040 0.96481 0.97124 1.02031 1.20304 0.94637 0.98308 0.93826 1.20131 0.98678 0.95749 1.00475 1.22291 1.00026 0.95457 0.99877 1.20764 0.88655 0.98279 0.87881 0.93666 0.96637 0.92968 0.93350 0.92441 0.91682 0.91914 0.91549 0.90724 0.91429 0.76796 0.89132 0.87188 0.85381 0.85061 0.85315 0.85775 0.92776 0.93243 0.96533 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 11.22 55.49 0.62 -25.93 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 10 C 0.14 3.02 6.51 -3.71 -0.02 2.99 16 11 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 12 C -0.08 -1.18 2.15 -90.58 -0.19 -1.38 16 13 C -0.12 -1.44 4.80 -26.73 -0.13 -1.57 16 14 C 0.12 1.43 5.43 -4.04 -0.02 1.41 16 15 N -0.73 -7.14 5.48 -60.29 -0.33 -7.47 16 16 C 0.52 6.19 7.09 -10.99 -0.08 6.11 16 17 O -0.52 -8.78 16.14 5.55 0.09 -8.69 16 18 C -0.10 -0.89 3.52 -91.56 -0.32 -1.21 16 19 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 20 C 0.06 0.45 7.54 38.05 0.29 0.74 16 21 O -0.30 -3.29 11.11 -20.18 -0.22 -3.52 16 22 C 0.11 1.24 7.03 -38.96 -0.27 0.96 16 23 C -0.14 -1.34 10.06 -39.30 -0.40 -1.74 16 24 C -0.08 -0.67 10.02 -39.68 -0.40 -1.07 16 25 C -0.15 -1.27 10.07 -39.53 -0.40 -1.67 16 26 C -0.05 -0.52 10.03 -39.72 -0.40 -0.92 16 27 C -0.15 -1.60 4.93 -104.10 -0.51 -2.11 16 28 C -0.14 -2.56 5.15 -26.61 -0.14 -2.70 16 29 C 0.17 4.08 5.31 -3.71 -0.02 4.06 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 2.50 8.47 -40.82 -0.35 2.16 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.11 0.63 7.86 -51.93 -0.41 0.22 16 43 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.86 6.50 -51.93 -0.34 0.52 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -34.76 398.69 -10.82 -45.58 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.05 Total: 0.08 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.39 Total: -7.48 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.22 Total: -48.82 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.13 Total: -12.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.76 -10.82 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714331753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.472 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds