Wall clock time and date at job start Wed Apr 1 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47430 * 274.06942 * 3 2 1 5 5 H 1.48504 * 109.46970 * 34.07015 * 3 2 1 6 6 H 1.48498 * 109.47083 * 154.06567 * 3 2 1 7 7 C 1.38810 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00113 * 197.51848 * 7 2 1 9 9 N 1.36940 * 120.00313 * 17.52835 * 7 2 1 10 10 C 1.46922 * 120.62919 * 207.99749 * 9 7 2 11 11 C 1.53190 * 108.77534 * 233.62385 * 10 9 7 12 12 C 1.53036 * 109.31682 * 305.37018 * 11 10 9 13 13 C 1.52995 * 109.46194 * 181.38487 * 12 11 10 14 14 C 1.53001 * 109.47005 * 174.96940 * 13 12 11 15 15 N 1.46502 * 109.47262 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00033 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00289 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99621 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.83009 * 303.69524 * 18 16 15 20 20 C 1.54705 * 110.97022 * 67.42445 * 18 16 15 21 21 O 1.43777 * 102.77576 * 92.94668 * 20 18 16 22 22 C 1.36139 * 109.20640 * 27.89081 * 21 20 18 23 23 C 1.39281 * 129.89810 * 161.19078 * 22 21 20 24 24 C 1.37938 * 120.23542 * 179.07728 * 23 22 21 25 25 C 1.38279 * 120.34989 * 359.97438 * 24 23 22 26 26 C 1.38348 * 119.77123 * 0.43722 * 25 24 23 27 27 C 1.37739 * 119.97510 * 359.51055 * 26 25 24 28 28 C 1.53044 * 109.52759 * 61.36638 * 12 11 10 29 29 C 1.46922 * 120.62951 * 28.01370 * 9 7 2 30 30 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58680 * 113.84056 * 10 9 7 32 32 H 1.08998 * 109.70605 * 353.48625 * 10 9 7 33 33 H 1.08998 * 109.50008 * 185.41254 * 11 10 9 34 34 H 1.09004 * 109.52319 * 65.33313 * 11 10 9 35 35 H 1.09006 * 109.45424 * 301.35511 * 12 11 10 36 36 H 1.08994 * 109.47297 * 54.97214 * 13 12 11 37 37 H 1.09002 * 109.47147 * 294.96885 * 13 12 11 38 38 H 1.09003 * 109.47082 * 59.99900 * 14 13 12 39 39 H 1.08994 * 109.47345 * 299.99765 * 14 13 12 40 40 H 0.96997 * 119.99988 * 359.97438 * 15 14 13 41 41 H 1.08996 * 110.74970 * 211.27036 * 20 18 16 42 42 H 1.09000 * 110.75039 * 334.44099 * 20 18 16 43 43 H 1.08003 * 119.88291 * 359.06535 * 23 22 21 44 44 H 1.08001 * 119.82276 * 179.97438 * 24 23 22 45 45 H 1.08011 * 120.11455 * 180.15599 * 25 24 23 46 46 H 1.08000 * 120.01121 * 179.75126 * 26 25 24 47 47 H 1.08996 * 109.49471 * 58.58649 * 28 12 11 48 48 H 1.09003 * 109.49324 * 178.67904 * 28 12 11 49 49 H 1.09001 * 109.58935 * 246.15812 * 29 9 7 50 50 H 1.09001 * 109.58630 * 6.44595 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5881 1.4168 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2241 0.2810 9 7 1.3732 -2.3604 -0.3582 10 6 1.8145 -3.6543 0.1800 11 6 2.0773 -4.6103 -0.9878 12 6 0.8282 -4.6889 -1.8685 13 6 1.0751 -5.6695 -3.0168 14 6 -0.2128 -5.8438 -3.8243 15 7 0.0237 -6.7822 -4.9241 16 6 -0.9761 -7.0902 -5.7739 17 8 -2.0716 -6.5908 -5.6278 18 6 -0.7329 -8.0559 -6.9049 19 1 0.0940 -7.7199 -7.5305 20 6 -0.4751 -9.4837 -6.3680 21 8 -1.7865 -10.0727 -6.3884 22 6 -2.5285 -9.4801 -7.3640 23 6 -3.6910 -9.9190 -7.9931 24 6 -4.2963 -9.1391 -8.9565 25 6 -3.7555 -7.9154 -9.3059 26 6 -2.5963 -7.4760 -8.6918 27 6 -1.9908 -8.2527 -7.7288 28 6 0.5166 -3.3035 -2.4392 29 6 0.2357 -2.3328 -1.2877 30 1 -0.4850 0.8400 0.0004 31 1 1.0367 -4.0673 0.8224 32 1 2.7304 -3.5199 0.7555 33 1 2.3124 -5.6017 -0.6006 34 1 2.9162 -4.2421 -1.5784 35 1 -0.0159 -5.0340 -1.2714 36 1 1.3831 -6.6333 -2.6116 37 1 1.8603 -5.2799 -3.6647 38 1 -0.5209 -4.8799 -4.2294 39 1 -0.9979 -6.2333 -3.1764 40 1 0.9000 -7.1813 -5.0412 41 1 0.2027 -10.0273 -7.0262 42 1 -0.0800 -9.4491 -5.3528 43 1 -4.1200 -10.8735 -7.7259 44 1 -5.1973 -9.4862 -9.4404 45 1 -4.2340 -7.3066 -10.0590 46 1 -2.1684 -6.5227 -8.9646 47 1 1.3702 -2.9472 -3.0157 48 1 -0.3593 -3.3647 -3.0851 49 1 -0.6708 -2.6381 -0.7651 50 1 0.1091 -1.3239 -1.6803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714331753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:48 Heat of formation + Delta-G solvation = -51.242537 kcal Electronic energy + Delta-G solvation = -29442.352831 eV Core-core repulsion = 25434.021397 eV Total energy + Delta-G solvation = -4008.331434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.49477 -40.37832 -39.46313 -38.34872 -36.73401 -35.13681 -33.96291 -33.01515 -31.49416 -31.09046 -30.65401 -29.68681 -26.97647 -25.33450 -24.46310 -23.79281 -23.39075 -22.87330 -22.16137 -21.32197 -20.59649 -18.84456 -18.70474 -17.95563 -17.71563 -17.24385 -16.89612 -16.57694 -16.39930 -16.30074 -15.69552 -15.31227 -15.26040 -15.07456 -14.87407 -14.72451 -14.46247 -14.35483 -14.02334 -14.01604 -13.81113 -13.52591 -13.06534 -12.94756 -12.78910 -12.70566 -12.64445 -12.57717 -12.34741 -12.20019 -12.16324 -11.89981 -11.78665 -11.77224 -11.52529 -11.15942 -11.00420 -10.90063 -10.54057 -10.13888 -9.89004 -9.16668 -8.68084 -7.87722 -5.33357 0.27709 0.40699 1.44981 1.46255 1.47006 1.55773 2.06700 2.28433 2.50398 2.79162 3.14755 3.26102 3.50868 3.70800 3.77621 3.83159 3.86582 3.95138 4.14261 4.17041 4.21396 4.30038 4.38621 4.42767 4.45044 4.49845 4.57550 4.59779 4.67096 4.68645 4.73715 4.79046 4.88869 5.01643 5.03802 5.06858 5.11515 5.30227 5.33577 5.34714 5.39308 5.42150 5.42234 5.45888 5.53678 5.56338 5.63825 5.66497 5.79140 6.17516 6.38772 6.50176 7.14344 7.18730 7.87318 8.38888 9.18352 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.001851 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.227566 B =15124.892115 C =15916.986267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.057 4.057 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.136 3.864 11 C -0.112 4.112 12 C -0.072 4.072 13 C -0.105 4.105 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.515 3.485 17 O -0.578 6.578 18 C -0.096 4.096 19 H 0.158 0.842 20 C 0.062 3.938 21 O -0.324 6.324 22 C 0.087 3.913 23 C -0.155 4.155 24 C -0.083 4.083 25 C -0.154 4.154 26 C -0.072 4.072 27 C -0.170 4.170 28 C -0.123 4.123 29 C 0.175 3.825 30 H 0.248 0.752 31 H 0.008 0.992 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.420 0.580 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.130 0.870 47 H 0.053 0.947 48 H 0.057 0.943 49 H -0.012 1.012 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -23.956 -20.249 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.252 4.252 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.091 4.091 13 C -0.143 4.143 14 C -0.002 4.002 15 N -0.363 5.363 16 C 0.302 3.698 17 O -0.457 6.457 18 C -0.117 4.117 19 H 0.175 0.825 20 C -0.013 4.013 21 O -0.238 6.238 22 C 0.042 3.958 23 C -0.174 4.174 24 C -0.100 4.100 25 C -0.172 4.172 26 C -0.090 4.090 27 C -0.171 4.171 28 C -0.162 4.162 29 C 0.049 3.951 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.258 0.742 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.148 0.852 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.006 0.994 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.113 -23.649 -19.931 30.928 hybrid contribution 0.262 1.519 0.480 1.614 sum 0.375 -22.130 -19.451 29.466 Atomic orbital electron populations 1.70214 1.06822 1.25748 1.55662 1.25856 0.96040 1.01730 1.01529 0.85238 0.78273 0.79498 0.77381 1.21300 1.22346 1.18956 1.19561 0.93036 0.86197 1.40238 0.91416 1.44347 1.36431 1.02411 1.50320 1.21118 0.96990 0.86123 0.94733 1.21889 0.97109 0.99311 0.96789 1.20904 0.98109 0.93948 0.96156 1.21697 0.95934 1.00387 0.96259 1.21339 0.98650 0.92331 0.87930 1.45842 1.14401 1.46593 1.29433 1.20750 0.84020 0.81861 0.83198 1.90735 1.26132 1.54807 1.74063 1.21659 0.98982 0.96400 0.94692 0.82502 1.24136 0.83270 0.88651 1.05237 1.86806 1.25386 1.61110 1.50536 1.19865 0.94577 0.91941 0.89447 1.20597 0.95405 1.02550 0.98831 1.21270 0.99681 0.93676 0.95410 1.21400 0.96113 0.97536 1.02186 1.20588 0.95411 0.98695 0.94267 1.20451 0.99794 0.95896 1.00999 1.22080 1.00338 0.96128 0.97673 1.20573 0.87679 0.97637 0.89210 0.94249 0.97415 0.92857 0.89519 0.92192 0.92576 0.88743 0.90047 0.93086 0.93063 0.74244 0.85826 0.85782 0.84276 0.82267 0.83160 0.85197 0.92822 0.92456 0.99411 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 11.22 21.65 0.24 -57.20 16 2 C -0.06 -3.24 4.90 84.86 0.42 -2.82 16 3 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.26 -14.56 9.58 84.03 0.81 -13.75 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 9 N -0.61 -31.26 2.99 -699.10 -2.09 -33.35 16 10 C 0.14 5.55 6.51 86.36 0.56 6.12 16 11 C -0.11 -3.37 5.36 30.67 0.16 -3.21 16 12 C -0.07 -2.11 2.15 -10.77 -0.02 -2.14 16 13 C -0.11 -2.07 4.80 30.59 0.15 -1.92 16 14 C 0.12 2.78 5.43 86.38 0.47 3.25 16 15 N -0.71 -12.15 5.48 -463.05 -2.54 -14.69 16 16 C 0.52 11.69 7.09 87.66 0.62 12.31 16 17 O -0.58 -19.87 16.14 -3.04 -0.05 -19.92 16 18 C -0.10 -1.47 3.52 -11.40 -0.04 -1.51 16 19 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 20 C 0.06 0.72 7.54 72.56 0.55 1.27 16 21 O -0.32 -6.80 11.11 -95.13 -1.06 -7.86 16 22 C 0.09 1.90 7.03 22.67 0.16 2.06 16 23 C -0.16 -2.90 10.06 22.45 0.23 -2.67 16 24 C -0.08 -1.26 10.02 22.21 0.22 -1.04 16 25 C -0.15 -2.50 10.07 22.31 0.22 -2.27 16 26 C -0.07 -1.39 10.03 22.18 0.22 -1.16 16 27 C -0.17 -3.53 4.93 -19.52 -0.10 -3.63 16 28 C -0.12 -4.59 5.15 30.67 0.16 -4.43 16 29 C 0.17 8.73 5.31 86.36 0.46 9.19 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 2.13 7.94 -2.39 -0.02 2.11 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.80 16 35 H 0.06 1.77 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.43 6.54 -2.39 -0.02 1.41 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.42 3.55 8.47 -92.71 -0.79 2.76 16 41 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 1.02 7.86 -2.39 -0.02 1.01 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.06 2.03 6.50 -2.39 -0.02 2.01 16 49 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 50 H 0.05 2.70 6.06 -2.39 -0.01 2.68 16 Total: -1.00 -80.79 398.69 1.93 -78.86 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.15 Total: 12.78 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.24 Total: -6.37 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.39 Total: -105.24 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.11 Total: -27.78 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.79 1.93 -78.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714331753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.620 kcal (2) G-P(sol) polarization free energy of solvation -80.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds