Wall clock time and date at job start Wed Apr 1 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48495 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46908 * 299.99849 * 3 2 1 6 6 H 1.48510 * 109.47128 * 59.99687 * 3 2 1 7 7 C 1.38814 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99792 * 197.37896 * 7 2 1 9 9 N 1.36936 * 119.99738 * 17.38340 * 7 2 1 10 10 C 1.46926 * 120.62994 * 207.67355 * 9 7 2 11 11 C 1.53183 * 108.77771 * 233.58920 * 10 9 7 12 12 C 1.53045 * 109.31405 * 305.36433 * 11 10 9 13 13 C 1.52998 * 109.46178 * 181.38391 * 12 11 10 14 14 C 1.53001 * 109.47225 * 174.99816 * 13 12 11 15 15 N 1.46496 * 109.46930 * 180.02562 * 14 13 12 16 16 C 1.34787 * 119.99496 * 180.27911 * 15 14 13 17 17 O 1.21276 * 119.99799 * 359.72284 * 16 15 14 18 18 C 1.50696 * 119.99485 * 179.72774 * 16 15 14 19 19 H 1.08997 * 110.83603 * 62.26814 * 18 16 15 20 20 C 1.54707 * 110.94701 * 298.54226 * 18 16 15 21 21 O 1.43761 * 102.80055 * 216.49175 * 20 18 16 22 22 C 1.36138 * 109.28455 * 27.55222 * 21 20 18 23 23 C 1.39282 * 129.87639 * 161.45762 * 22 21 20 24 24 C 1.37931 * 120.24360 * 179.55041 * 23 22 21 25 25 C 1.38288 * 120.35096 * 0.02562 * 24 23 22 26 26 C 1.38355 * 119.76514 * 0.19864 * 25 24 23 27 27 C 1.37746 * 119.97812 * 359.97438 * 26 25 24 28 28 C 1.53040 * 109.53430 * 61.36580 * 12 11 10 29 29 C 1.46929 * 120.63223 * 27.65630 * 9 7 2 30 30 H 0.97001 * 120.00405 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58388 * 113.80028 * 10 9 7 32 32 H 1.09007 * 109.58350 * 353.37727 * 10 9 7 33 33 H 1.08999 * 109.49909 * 185.41550 * 11 10 9 34 34 H 1.08997 * 109.50078 * 65.31715 * 11 10 9 35 35 H 1.08999 * 109.45811 * 301.35832 * 12 11 10 36 36 H 1.09000 * 109.46916 * 55.00074 * 13 12 11 37 37 H 1.08999 * 109.47336 * 295.00212 * 13 12 11 38 38 H 1.09001 * 109.46476 * 60.00083 * 14 13 12 39 39 H 1.08999 * 109.47287 * 300.00426 * 14 13 12 40 40 H 0.96995 * 120.00394 * 0.02562 * 15 14 13 41 41 H 1.09008 * 110.74733 * 334.82221 * 20 18 16 42 42 H 1.08998 * 110.74635 * 98.15919 * 20 18 16 43 43 H 1.07996 * 119.87957 * 359.56031 * 23 22 21 44 44 H 1.07997 * 119.82429 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.11900 * 180.17809 * 25 24 23 46 46 H 1.07999 * 120.01382 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.50005 * 58.58855 * 28 12 11 48 48 H 1.09008 * 109.49606 * 178.68478 * 28 12 11 49 49 H 1.08997 * 109.58454 * 246.20158 * 29 9 7 50 50 H 1.09001 * 109.58283 * 6.62397 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2799 9 7 1.3726 -2.3611 -0.3533 10 6 1.8195 -3.6547 0.1812 11 6 2.0747 -4.6100 -0.9887 12 6 0.8190 -4.6900 -1.8600 13 6 1.0584 -5.6698 -3.0104 14 6 -0.2351 -5.8451 -3.8086 15 7 -0.0060 -6.7838 -4.9097 16 6 -1.0104 -7.0887 -5.7553 17 8 -2.1050 -6.5897 -5.6015 18 6 -0.7731 -8.0496 -6.8917 19 1 -0.5000 -9.0353 -6.5152 20 6 0.3071 -7.5078 -7.8577 21 8 -0.1729 -7.9346 -9.1438 22 6 -1.5291 -8.0463 -9.1032 23 6 -2.4535 -8.0847 -10.1444 24 6 -3.7999 -8.2131 -9.8736 25 6 -4.2443 -8.3043 -8.5672 26 6 -3.3329 -8.2623 -7.5271 27 6 -1.9882 -8.1305 -7.7952 28 6 0.5011 -3.3048 -2.4279 29 6 0.2281 -2.3347 -1.2743 30 1 -0.4851 0.8400 -0.0004 31 1 1.0470 -4.0688 0.8294 32 1 2.7402 -3.5172 0.7483 33 1 2.3139 -5.6012 -0.6036 34 1 2.9085 -4.2400 -1.5853 35 1 -0.0201 -5.0363 -1.2567 36 1 1.3703 -6.6336 -2.6078 37 1 1.8385 -5.2794 -3.6639 38 1 -0.5470 -4.8813 -4.2111 39 1 -1.0153 -6.2355 -3.1551 40 1 0.8694 -7.1831 -5.0325 41 1 0.3601 -6.4202 -7.8068 42 1 1.2778 -7.9533 -7.6404 43 1 -2.1149 -8.0139 -11.1674 44 1 -4.5107 -8.2426 -10.6861 45 1 -5.2991 -8.4077 -8.3597 46 1 -3.6756 -8.3336 -6.5054 47 1 1.3498 -2.9471 -3.0110 48 1 -0.3797 -3.3671 -3.0671 49 1 -0.6741 -2.6411 -0.7449 50 1 0.0988 -1.3264 -1.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714331754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:53 Heat of formation + Delta-G solvation = -30.102759 kcal Electronic energy + Delta-G solvation = -29421.240093 eV Core-core repulsion = 25413.825349 eV Total energy + Delta-G solvation = -4007.414744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.76555 -39.54116 -38.00635 -37.71434 -35.49000 -33.69287 -33.11425 -31.37567 -30.37898 -29.85847 -29.76770 -28.46159 -25.41307 -24.35101 -23.27621 -22.73175 -22.31168 -21.87095 -20.95011 -20.23591 -19.08808 -17.87543 -17.66482 -17.05577 -16.75964 -16.14061 -15.81052 -15.62185 -15.45410 -14.80365 -14.56455 -14.19048 -13.98645 -13.76565 -13.59507 -13.54734 -13.43559 -13.29449 -13.01323 -12.94788 -12.62169 -12.35463 -12.21045 -11.99629 -11.58093 -11.39047 -11.32839 -11.21145 -11.11267 -10.92920 -10.71311 -10.47448 -10.23779 -10.14272 -10.05356 -9.86820 -9.48559 -9.38218 -9.22435 -9.15715 -8.49176 -8.45148 -6.64947 -5.76987 -3.18917 0.96216 1.11515 2.31106 2.77669 2.92029 3.37489 3.45350 3.47419 3.48334 3.79324 4.10799 4.38848 4.50837 4.51004 4.69954 4.79464 4.88270 4.92808 5.02716 5.08684 5.11706 5.13465 5.26241 5.35561 5.38483 5.46854 5.61721 5.69336 5.71309 5.78096 5.98445 6.00138 6.00529 6.08248 6.12619 6.21502 6.22137 6.27552 6.29281 6.35975 6.52307 6.63799 6.72391 6.81853 6.83194 6.87846 7.01078 7.22535 7.40978 7.69368 7.81317 7.94569 8.47103 9.23499 9.87498 10.44228 11.31331 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.745840 B =15101.725364 C =15479.082737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.126 4.126 12 C -0.075 4.075 13 C -0.124 4.124 14 C 0.116 3.884 15 N -0.727 5.727 16 C 0.520 3.480 17 O -0.522 6.522 18 C -0.101 4.101 19 H 0.123 0.877 20 C 0.063 3.937 21 O -0.300 6.300 22 C 0.105 3.895 23 C -0.143 4.143 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.039 4.039 27 C -0.156 4.156 28 C -0.138 4.138 29 C 0.170 3.830 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.016 0.984 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -21.078 -17.751 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.018 3.982 11 C -0.165 4.165 12 C -0.094 4.094 13 C -0.162 4.162 14 C -0.007 4.007 15 N -0.379 5.379 16 C 0.304 3.696 17 O -0.397 6.397 18 C -0.123 4.123 19 H 0.141 0.859 20 C -0.012 4.012 21 O -0.214 6.214 22 C 0.060 3.940 23 C -0.161 4.161 24 C -0.100 4.100 25 C -0.170 4.170 26 C -0.057 4.057 27 C -0.157 4.157 28 C -0.177 4.177 29 C 0.044 3.956 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.035 0.965 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.747 -20.576 -17.776 27.329 hybrid contribution 0.859 0.720 0.211 1.140 sum -1.888 -19.856 -17.565 26.577 Atomic orbital electron populations 1.70046 1.05250 1.25347 1.54055 1.25041 0.95279 0.98403 1.01104 0.86250 0.79349 0.84072 0.77272 1.20295 1.21575 1.21764 1.19223 0.92683 0.84930 1.41204 0.91721 1.44072 1.35899 1.01356 1.50246 1.20893 0.97445 0.87038 0.92821 1.22035 0.96976 0.98787 0.98697 1.20974 0.98585 0.95044 0.94829 1.21897 0.96185 1.00173 0.97957 1.21582 0.98632 0.92963 0.87509 1.46104 1.13622 1.47504 1.30658 1.20042 0.84833 0.82124 0.82564 1.90746 1.23941 1.52330 1.72684 1.21567 0.94981 1.00896 0.94831 0.85948 1.23824 0.97227 1.00841 0.79318 1.86837 1.17321 1.83243 1.34005 1.19549 0.83285 0.96925 0.94212 1.20223 0.91348 1.06874 0.97699 1.20909 0.94321 0.97631 0.97119 1.21094 0.99772 1.03773 0.92341 1.20399 0.90586 0.94813 0.99939 1.20179 0.94503 1.08429 0.92619 1.22297 0.99998 0.95459 0.99922 1.20773 0.88538 0.98336 0.87948 0.93708 0.96630 0.92964 0.93348 0.92427 0.91693 0.91902 0.91542 0.90683 0.91374 0.76738 0.89825 0.86620 0.85390 0.85091 0.85332 0.85341 0.92772 0.93245 0.96547 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.90 9.59 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.81 3.00 -172.32 -0.52 -15.33 16 10 C 0.14 2.98 6.52 -3.72 -0.02 2.96 16 11 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 12 C -0.08 -1.15 2.15 -90.58 -0.19 -1.35 16 13 C -0.12 -1.41 4.80 -26.73 -0.13 -1.53 16 14 C 0.12 1.35 5.43 -4.04 -0.02 1.33 16 15 N -0.73 -6.71 5.51 -60.30 -0.33 -7.04 16 16 C 0.52 5.77 7.08 -10.98 -0.08 5.69 16 17 O -0.52 -8.02 15.01 5.56 0.08 -7.94 16 18 C -0.10 -0.87 3.52 -91.56 -0.32 -1.20 16 19 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 20 C 0.06 0.47 7.50 38.06 0.29 0.76 16 21 O -0.30 -3.04 11.10 -20.18 -0.22 -3.27 16 22 C 0.11 1.13 7.04 -38.95 -0.27 0.85 16 23 C -0.14 -1.32 10.06 -39.31 -0.40 -1.72 16 24 C -0.08 -0.67 10.02 -39.68 -0.40 -1.06 16 25 C -0.15 -1.35 10.07 -39.52 -0.40 -1.75 16 26 C -0.04 -0.42 9.05 -39.72 -0.36 -0.78 16 27 C -0.16 -1.68 5.44 -104.10 -0.57 -2.25 16 28 C -0.14 -2.53 5.14 -26.61 -0.14 -2.67 16 29 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.03 6.53 -51.93 -0.34 0.69 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 2.38 8.47 -40.82 -0.35 2.03 16 41 H 0.08 0.65 7.91 -51.92 -0.41 0.24 16 42 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 1.38 7.64 -52.49 -0.40 0.98 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 0.85 6.50 -51.92 -0.34 0.51 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -33.54 396.65 -10.85 -44.39 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.03 Total: 0.28 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -3.40 Total: -8.01 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.23 Total: -48.19 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.14 Total: -11.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.54 -10.85 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714331754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.287 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds