Wall clock time and date at job start Wed Apr 1 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48495 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46908 * 299.99849 * 3 2 1 6 6 H 1.48510 * 109.47128 * 59.99687 * 3 2 1 7 7 C 1.38814 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99792 * 197.37896 * 7 2 1 9 9 N 1.36936 * 119.99738 * 17.38340 * 7 2 1 10 10 C 1.46926 * 120.62994 * 207.67355 * 9 7 2 11 11 C 1.53183 * 108.77771 * 233.58920 * 10 9 7 12 12 C 1.53045 * 109.31405 * 305.36433 * 11 10 9 13 13 C 1.52998 * 109.46178 * 181.38391 * 12 11 10 14 14 C 1.53001 * 109.47225 * 174.99816 * 13 12 11 15 15 N 1.46496 * 109.46930 * 180.02562 * 14 13 12 16 16 C 1.34787 * 119.99496 * 180.27911 * 15 14 13 17 17 O 1.21276 * 119.99799 * 359.72284 * 16 15 14 18 18 C 1.50696 * 119.99485 * 179.72774 * 16 15 14 19 19 H 1.08997 * 110.83603 * 62.26814 * 18 16 15 20 20 C 1.54707 * 110.94701 * 298.54226 * 18 16 15 21 21 O 1.43761 * 102.80055 * 216.49175 * 20 18 16 22 22 C 1.36138 * 109.28455 * 27.55222 * 21 20 18 23 23 C 1.39282 * 129.87639 * 161.45762 * 22 21 20 24 24 C 1.37931 * 120.24360 * 179.55041 * 23 22 21 25 25 C 1.38288 * 120.35096 * 0.02562 * 24 23 22 26 26 C 1.38355 * 119.76514 * 0.19864 * 25 24 23 27 27 C 1.37746 * 119.97812 * 359.97438 * 26 25 24 28 28 C 1.53040 * 109.53430 * 61.36580 * 12 11 10 29 29 C 1.46929 * 120.63223 * 27.65630 * 9 7 2 30 30 H 0.97001 * 120.00405 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58388 * 113.80028 * 10 9 7 32 32 H 1.09007 * 109.58350 * 353.37727 * 10 9 7 33 33 H 1.08999 * 109.49909 * 185.41550 * 11 10 9 34 34 H 1.08997 * 109.50078 * 65.31715 * 11 10 9 35 35 H 1.08999 * 109.45811 * 301.35832 * 12 11 10 36 36 H 1.09000 * 109.46916 * 55.00074 * 13 12 11 37 37 H 1.08999 * 109.47336 * 295.00212 * 13 12 11 38 38 H 1.09001 * 109.46476 * 60.00083 * 14 13 12 39 39 H 1.08999 * 109.47287 * 300.00426 * 14 13 12 40 40 H 0.96995 * 120.00394 * 0.02562 * 15 14 13 41 41 H 1.09008 * 110.74733 * 334.82221 * 20 18 16 42 42 H 1.08998 * 110.74635 * 98.15919 * 20 18 16 43 43 H 1.07996 * 119.87957 * 359.56031 * 23 22 21 44 44 H 1.07997 * 119.82429 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.11900 * 180.17809 * 25 24 23 46 46 H 1.07999 * 120.01382 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.50005 * 58.58855 * 28 12 11 48 48 H 1.09008 * 109.49606 * 178.68478 * 28 12 11 49 49 H 1.08997 * 109.58454 * 246.20158 * 29 9 7 50 50 H 1.09001 * 109.58283 * 6.62397 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2799 9 7 1.3726 -2.3611 -0.3533 10 6 1.8195 -3.6547 0.1812 11 6 2.0747 -4.6100 -0.9887 12 6 0.8190 -4.6900 -1.8600 13 6 1.0584 -5.6698 -3.0104 14 6 -0.2351 -5.8451 -3.8086 15 7 -0.0060 -6.7838 -4.9097 16 6 -1.0104 -7.0887 -5.7553 17 8 -2.1050 -6.5897 -5.6015 18 6 -0.7731 -8.0496 -6.8917 19 1 -0.5000 -9.0353 -6.5152 20 6 0.3071 -7.5078 -7.8577 21 8 -0.1729 -7.9346 -9.1438 22 6 -1.5291 -8.0463 -9.1032 23 6 -2.4535 -8.0847 -10.1444 24 6 -3.7999 -8.2131 -9.8736 25 6 -4.2443 -8.3043 -8.5672 26 6 -3.3329 -8.2623 -7.5271 27 6 -1.9882 -8.1305 -7.7952 28 6 0.5011 -3.3048 -2.4279 29 6 0.2281 -2.3347 -1.2743 30 1 -0.4851 0.8400 -0.0004 31 1 1.0470 -4.0688 0.8294 32 1 2.7402 -3.5172 0.7483 33 1 2.3139 -5.6012 -0.6036 34 1 2.9085 -4.2400 -1.5853 35 1 -0.0201 -5.0363 -1.2567 36 1 1.3703 -6.6336 -2.6078 37 1 1.8385 -5.2794 -3.6639 38 1 -0.5470 -4.8813 -4.2111 39 1 -1.0153 -6.2355 -3.1551 40 1 0.8694 -7.1831 -5.0325 41 1 0.3601 -6.4202 -7.8068 42 1 1.2778 -7.9533 -7.6404 43 1 -2.1149 -8.0139 -11.1674 44 1 -4.5107 -8.2426 -10.6861 45 1 -5.2991 -8.4077 -8.3597 46 1 -3.6756 -8.3336 -6.5054 47 1 1.3498 -2.9471 -3.0110 48 1 -0.3797 -3.3671 -3.0671 49 1 -0.6741 -2.6411 -0.7449 50 1 0.0988 -1.3264 -1.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714331754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:52 Heat of formation + Delta-G solvation = -50.918009 kcal Electronic energy + Delta-G solvation = -29422.142710 eV Core-core repulsion = 25413.825349 eV Total energy + Delta-G solvation = -4008.317361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.45957 -40.44061 -39.47064 -38.37518 -36.73271 -35.12933 -33.95312 -33.01320 -31.48690 -31.10193 -30.67036 -29.66839 -26.95689 -25.29914 -24.46956 -23.81033 -23.42981 -22.88736 -22.15026 -21.25897 -20.58304 -18.71711 -18.53436 -18.42602 -17.73375 -17.02518 -16.76298 -16.58366 -16.51317 -16.16087 -15.71327 -15.42513 -15.29523 -15.01326 -14.90848 -14.63103 -14.41871 -14.32782 -14.14903 -13.97567 -13.83446 -13.60639 -13.11990 -13.04727 -12.93304 -12.73487 -12.62446 -12.57885 -12.34389 -12.16015 -11.93577 -11.88586 -11.78673 -11.78125 -11.52169 -11.15779 -10.99886 -10.87766 -10.54275 -10.13449 -9.88184 -9.18591 -8.68006 -7.87672 -5.32806 0.27459 0.39893 1.44203 1.45840 1.47665 1.56638 2.03310 2.23780 2.50312 2.78833 3.12652 3.26361 3.49234 3.70198 3.75646 3.84052 3.88982 3.96331 4.05397 4.15325 4.20791 4.31707 4.42757 4.44611 4.46319 4.50129 4.56893 4.58804 4.67346 4.69564 4.74598 4.79743 4.89744 5.02298 5.04526 5.07314 5.12044 5.31080 5.32339 5.35492 5.39844 5.42938 5.43952 5.47003 5.54945 5.57018 5.61210 5.67051 5.79983 6.15965 6.38885 6.49196 7.14579 7.17065 7.87766 8.38815 9.18403 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.745840 B =15101.725364 C =15479.082737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.057 4.057 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.113 4.113 12 C -0.071 4.071 13 C -0.106 4.106 14 C 0.121 3.879 15 N -0.709 5.709 16 C 0.519 3.481 17 O -0.572 6.572 18 C -0.094 4.094 19 H 0.150 0.850 20 C 0.063 3.937 21 O -0.311 6.311 22 C 0.086 3.914 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.158 4.158 26 C -0.061 4.061 27 C -0.177 4.177 28 C -0.124 4.124 29 C 0.174 3.826 30 H 0.248 0.752 31 H 0.009 0.991 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.419 0.581 41 H 0.076 0.924 42 H 0.157 0.843 43 H 0.144 0.856 44 H 0.161 0.839 45 H 0.147 0.853 46 H 0.117 0.883 47 H 0.052 0.948 48 H 0.058 0.942 49 H -0.011 1.011 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -23.274 -19.200 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.003 4.003 15 N -0.362 5.362 16 C 0.305 3.695 17 O -0.450 6.450 18 C -0.115 4.115 19 H 0.168 0.832 20 C -0.011 4.011 21 O -0.226 6.226 22 C 0.041 3.959 23 C -0.171 4.171 24 C -0.098 4.098 25 C -0.176 4.176 26 C -0.080 4.080 27 C -0.179 4.179 28 C -0.162 4.162 29 C 0.049 3.951 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.257 0.743 41 H 0.094 0.906 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.179 0.821 45 H 0.164 0.836 46 H 0.135 0.865 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.007 0.993 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.582 -22.820 -19.227 29.846 hybrid contribution 0.154 1.385 0.710 1.564 sum -0.428 -21.436 -18.517 28.329 Atomic orbital electron populations 1.70212 1.06788 1.25671 1.55776 1.25835 0.96044 1.01670 1.01634 0.85214 0.78745 0.79855 0.76700 1.18802 1.21800 1.22021 1.19578 0.92997 0.86169 1.40167 0.91435 1.44362 1.35862 1.02377 1.50954 1.21127 0.96964 0.86124 0.94759 1.21891 0.97115 0.99300 0.96830 1.20902 0.98067 0.93918 0.96178 1.21701 0.95985 1.00364 0.96329 1.21351 0.98688 0.92310 0.87917 1.45873 1.14319 1.46572 1.29442 1.20497 0.84233 0.81809 0.82930 1.90730 1.26048 1.54270 1.73993 1.21606 0.94688 1.01411 0.93765 0.83214 1.24077 0.98370 1.00797 0.77905 1.86815 1.17009 1.83409 1.35338 1.19823 0.83802 0.97710 0.94583 1.20595 0.91738 1.06373 0.98354 1.21274 0.94566 0.96351 0.97608 1.21402 1.00541 1.03146 0.92476 1.20518 0.91313 0.96141 0.99986 1.20483 0.95141 1.08743 0.93503 1.22085 1.00315 0.96165 0.97680 1.20582 0.87586 0.97684 0.89282 0.94257 0.97309 0.92924 0.89508 0.92300 0.92410 0.88758 0.90188 0.93113 0.92592 0.74323 0.90606 0.82519 0.83813 0.82123 0.83557 0.86451 0.92945 0.92383 0.99322 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 11.19 21.65 0.24 -56.94 16 2 C -0.06 -3.25 4.91 84.86 0.42 -2.84 16 3 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.26 -14.44 9.59 84.03 0.81 -13.64 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -31.08 3.00 -699.10 -2.09 -33.17 16 10 C 0.14 5.49 6.52 86.36 0.56 6.06 16 11 C -0.11 -3.34 5.36 30.67 0.16 -3.17 16 12 C -0.07 -2.05 2.15 -10.77 -0.02 -2.07 16 13 C -0.11 -2.01 4.80 30.59 0.15 -1.86 16 14 C 0.12 2.61 5.43 86.38 0.47 3.08 16 15 N -0.71 -11.33 5.51 -463.06 -2.55 -13.88 16 16 C 0.52 10.97 7.08 87.65 0.62 11.59 16 17 O -0.57 -17.90 15.01 -3.02 -0.05 -17.95 16 18 C -0.09 -1.45 3.52 -11.40 -0.04 -1.50 16 19 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 20 C 0.06 0.78 7.50 72.56 0.54 1.33 16 21 O -0.31 -5.82 11.10 -95.13 -1.06 -6.87 16 22 C 0.09 1.76 7.04 22.68 0.16 1.92 16 23 C -0.15 -2.64 10.06 22.45 0.23 -2.41 16 24 C -0.08 -1.20 10.02 22.21 0.22 -0.97 16 25 C -0.16 -2.73 10.07 22.31 0.22 -2.51 16 26 C -0.06 -1.33 9.05 22.18 0.20 -1.13 16 27 C -0.18 -3.76 5.44 -19.52 -0.11 -3.86 16 28 C -0.12 -4.53 5.14 30.67 0.16 -4.38 16 29 C 0.17 8.64 5.31 86.36 0.46 9.09 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.36 6.53 -2.39 -0.02 1.35 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.42 3.28 8.47 -92.71 -0.79 2.49 16 41 H 0.08 1.05 7.91 -2.38 -0.02 1.03 16 42 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 45 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 46 H 0.12 2.69 7.64 -2.91 -0.02 2.66 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 2.01 6.50 -2.38 -0.02 2.00 16 49 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 50 H 0.05 2.69 6.04 -2.39 -0.01 2.68 16 Total: -1.00 -77.57 396.65 1.89 -75.68 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.15 Total: 12.72 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.21 Total: -7.27 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -4.40 Total: -103.98 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.10 Total: -24.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -77.57 1.89 -75.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714331754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.763 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds