Wall clock time and date at job start Wed Apr 1 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47048 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47094 * 30.00122 * 3 2 1 6 6 H 1.48500 * 109.46944 * 150.00133 * 3 2 1 7 7 C 1.38813 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47275 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.91820 * 51.09845 * 11 10 9 13 13 C 1.55164 * 111.00569 * 174.99970 * 11 10 9 14 14 C 1.54318 * 102.94503 * 153.57956 * 13 11 10 15 15 N 1.47026 * 107.26771 * 337.80576 * 14 13 11 16 16 C 1.34783 * 125.64537 * 178.91070 * 15 14 13 17 17 O 1.21278 * 119.99640 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00224 * 0.02562 * 16 15 14 19 19 O 1.42901 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99515 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.46851 * 179.97438 * 20 19 18 22 22 C 1.32574 * 119.99834 * 136.24443 * 21 20 19 23 23 C 1.47809 * 119.99987 * 8.03594 * 22 21 20 24 24 C 1.39534 * 120.14316 * 215.11448 * 23 22 21 25 25 C 1.37974 * 119.85227 * 179.72287 * 24 23 22 26 26 C 1.38341 * 120.14508 * 0.52898 * 25 24 23 27 27 C 1.38339 * 120.28478 * 359.76270 * 26 25 24 28 28 C 1.37973 * 120.14529 * 359.95846 * 27 26 25 29 29 C 1.47419 * 108.70637 * 358.94352 * 15 14 13 30 30 H 0.97009 * 119.99962 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00378 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47409 * 59.99772 * 10 9 7 33 33 H 1.09003 * 109.47212 * 299.99534 * 10 9 7 34 34 H 1.08998 * 110.72093 * 35.20712 * 13 11 10 35 35 H 1.09007 * 110.71514 * 271.94001 * 13 11 10 36 36 H 1.08994 * 109.88979 * 97.21766 * 14 13 11 37 37 H 1.09001 * 109.88421 * 218.23917 * 14 13 11 38 38 H 1.08999 * 109.47176 * 300.00426 * 18 16 15 39 39 H 1.09001 * 109.46986 * 60.00210 * 18 16 15 40 40 H 1.08992 * 109.47718 * 300.00561 * 20 19 18 41 41 H 1.09001 * 109.46743 * 60.00609 * 20 19 18 42 42 H 1.08003 * 120.00482 * 316.25148 * 21 20 19 43 43 H 1.07996 * 120.00178 * 188.03888 * 22 21 20 44 44 H 1.07998 * 120.07169 * 359.96701 * 24 23 22 45 45 H 1.08001 * 119.92586 * 180.27061 * 25 24 23 46 46 H 1.08002 * 119.85738 * 179.74788 * 26 25 24 47 47 H 1.08007 * 119.92896 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.07023 * 180.02562 * 28 27 26 49 49 H 1.08993 * 110.36770 * 142.96729 * 29 15 14 50 50 H 1.09008 * 110.36218 * 265.18192 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6162 -2.1914 -0.0009 12 1 5.8820 -1.4924 0.7921 13 6 6.4267 -3.5087 0.1242 14 6 7.7662 -3.1563 -0.5561 15 7 7.5141 -2.0194 -1.4537 16 6 8.4376 -1.4002 -2.2154 17 8 8.1154 -0.4679 -2.9211 18 6 9.8706 -1.8662 -2.1903 19 8 10.6499 -1.0577 -3.0741 20 6 12.0319 -1.4179 -3.1246 21 6 12.7540 -0.5057 -4.0823 22 6 13.9347 -0.0002 -3.7536 23 6 14.6243 -0.4668 -2.5324 24 6 15.3851 0.4235 -1.7738 25 6 16.0216 -0.0172 -0.6317 26 6 15.9157 -1.3410 -0.2442 27 6 15.1679 -2.2301 -0.9952 28 6 14.5217 -1.8009 -2.1362 29 6 6.0841 -1.6684 -1.3819 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8490 -3.0416 -0.8918 33 1 3.8484 -3.0435 0.8882 34 1 5.9273 -4.3204 -0.4047 35 1 6.5824 -3.7676 1.1715 36 1 8.5027 -2.8773 0.1974 37 1 8.1273 -4.0106 -1.1287 38 1 10.2633 -1.7789 -1.1773 39 1 9.9198 -2.9069 -2.5107 40 1 12.4690 -1.3215 -2.1308 41 1 12.1263 -2.4492 -3.4645 42 1 12.3097 -0.2636 -5.0365 43 1 14.3926 0.7526 -4.3781 44 1 15.4723 1.4561 -2.0777 45 1 16.6072 0.6719 -0.0412 46 1 16.4192 -1.6819 0.6484 47 1 15.0894 -3.2625 -0.6876 48 1 13.9379 -2.4959 -2.7214 49 1 5.9552 -0.5878 -1.4418 50 1 5.5321 -2.1606 -2.1827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714353283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:22 Heat of formation + Delta-G solvation = -12.096089 kcal Electronic energy + Delta-G solvation = -28535.242355 eV Core-core repulsion = 24528.608439 eV Total energy + Delta-G solvation = -4006.633916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.22733 -39.86071 -38.36882 -37.32570 -35.06158 -34.86475 -32.38144 -31.52568 -30.86080 -30.36480 -29.29612 -28.36798 -26.48942 -25.12782 -23.35166 -22.97571 -22.75158 -21.74136 -20.36111 -19.95084 -19.32496 -17.83933 -17.51255 -17.01755 -16.77992 -16.68178 -16.13620 -15.89894 -15.34470 -15.17785 -14.90965 -14.52977 -14.17669 -14.06510 -13.87475 -13.82003 -13.62613 -13.17759 -13.03991 -12.93308 -12.72726 -12.53304 -12.37559 -12.29001 -12.05504 -11.94586 -11.73226 -11.53514 -11.17221 -10.96830 -10.72099 -10.67043 -10.54734 -10.51787 -10.11430 -9.94559 -9.80913 -9.58030 -9.34320 -8.89503 -8.71619 -8.69542 -7.23722 -5.76078 -3.12095 0.52794 0.93784 1.82738 2.53562 2.60487 3.37370 3.40867 3.44801 3.49231 3.66312 4.23730 4.31409 4.40435 4.50239 4.50668 4.61196 4.63356 4.63999 4.71243 4.75681 4.79400 4.86075 4.88035 4.96046 5.00330 5.06156 5.14845 5.30542 5.32111 5.43851 5.48315 5.55085 5.58275 5.73191 5.75880 5.80830 5.86882 5.88860 5.89949 6.05695 6.09946 6.13305 6.14138 6.24478 6.28896 6.52189 6.57671 6.68804 6.72871 7.42545 7.98862 8.10730 8.42637 9.21262 9.93886 10.12782 11.42090 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.001771 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.778474 B =15803.665278 C =16216.559943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.124 4.124 14 C 0.098 3.902 15 N -0.620 5.620 16 C 0.526 3.474 17 O -0.517 6.517 18 C 0.052 3.948 19 O -0.360 6.360 20 C 0.078 3.922 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.060 4.060 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.117 4.117 29 C 0.114 3.886 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.161 -8.417 -2.095 37.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.025 4.025 15 N -0.356 5.356 16 C 0.313 3.687 17 O -0.392 6.392 18 C -0.028 4.028 19 O -0.278 6.278 20 C 0.003 3.997 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.060 4.060 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.135 4.135 29 C -0.007 4.007 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.097 0.903 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 35.740 -7.794 -2.653 36.676 hybrid contribution 0.682 0.983 0.202 1.213 sum 36.422 -6.811 -2.450 37.134 Atomic orbital electron populations 1.69703 1.05100 1.25857 1.57439 1.24667 0.95236 0.97227 1.01887 0.86574 0.79162 0.84959 0.77993 1.20897 1.21687 1.20363 1.19034 0.80554 0.94739 1.43261 0.89165 1.42725 1.04133 1.02160 1.91219 1.20564 0.86621 0.89556 0.99082 1.22656 0.97075 0.96713 0.96552 0.89670 1.22638 0.93928 0.98263 1.01358 1.22103 0.98931 0.88654 0.92812 1.48507 1.09671 1.33744 1.43702 1.19816 0.86144 0.82877 0.79874 1.90761 1.80923 1.27763 1.39711 1.22147 0.90081 0.95310 0.95281 1.88031 1.18903 1.56534 1.64340 1.22022 0.81553 0.97304 0.98836 1.23039 0.95027 0.97609 0.99226 1.21683 0.96336 0.99590 0.95776 1.19135 0.97857 0.93617 0.95399 1.21307 0.96707 0.99439 0.95038 1.21138 0.99687 0.96053 0.96886 1.21247 0.99039 0.93686 0.99799 1.21116 0.97567 0.99844 0.95367 1.21492 0.99551 0.95175 0.97279 1.22380 0.78754 1.01856 0.97712 0.93042 0.80609 0.95100 0.94891 0.89960 0.89712 0.91472 0.91362 0.90366 0.90326 0.91262 0.92124 0.85393 0.85290 0.85728 0.85867 0.86000 0.85813 0.85630 0.90253 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.69 27.74 -169.99 -4.71 17.98 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -17.85 5.35 -59.91 -0.32 -18.18 16 10 C 0.17 3.08 5.72 -4.05 -0.02 3.05 16 11 C -0.11 -1.56 3.05 -88.47 -0.27 -1.83 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.12 -1.21 6.42 -24.90 -0.16 -1.37 16 14 C 0.10 0.87 6.49 -3.06 -0.02 0.85 16 15 N -0.62 -8.13 3.33 -170.53 -0.57 -8.70 16 16 C 0.53 7.74 7.93 -10.98 -0.09 7.65 16 17 O -0.52 -10.22 16.75 -14.35 -0.24 -10.46 16 18 C 0.05 0.54 5.61 36.01 0.20 0.74 16 19 O -0.36 -4.48 9.86 -55.14 -0.54 -5.02 16 20 C 0.08 0.67 4.53 36.00 0.16 0.83 16 21 C -0.13 -1.08 9.84 -36.22 -0.36 -1.44 16 22 C -0.12 -0.85 9.81 -37.57 -0.37 -1.22 16 23 C -0.06 -0.46 5.17 -105.01 -0.54 -1.00 16 24 C -0.11 -0.76 9.79 -39.19 -0.38 -1.14 16 25 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 26 C -0.12 -0.73 10.04 -39.51 -0.40 -1.12 16 27 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 28 C -0.12 -0.80 7.42 -39.19 -0.29 -1.09 16 29 C 0.11 1.77 6.32 -2.53 -0.02 1.75 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.47 5.53 -40.82 -0.23 8.24 16 32 H 0.03 0.57 7.96 -51.93 -0.41 0.15 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.57 5.32 -51.93 -0.28 0.29 16 41 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 47 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 48 H 0.13 0.69 5.83 -52.49 -0.31 0.39 16 49 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 50 H 0.08 1.21 7.91 -51.92 -0.41 0.80 16 LS Contribution 409.74 15.07 6.17 6.17 Total: -1.00 -36.86 409.74 -10.98 -47.84 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.94 Total: 3.89 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.60 Total: -4.70 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.11 Total: -55.69 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.78 Total: -15.49 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.86 -10.98 -47.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.743 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds