Wall clock time and date at job start Wed Apr 1 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47048 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47094 * 30.00122 * 3 2 1 6 6 H 1.48500 * 109.46944 * 150.00133 * 3 2 1 7 7 C 1.38813 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47275 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.91820 * 51.09845 * 11 10 9 13 13 C 1.55164 * 111.00569 * 174.99970 * 11 10 9 14 14 C 1.54318 * 102.94503 * 153.57956 * 13 11 10 15 15 N 1.47026 * 107.26771 * 337.80576 * 14 13 11 16 16 C 1.34783 * 125.64537 * 178.91070 * 15 14 13 17 17 O 1.21278 * 119.99640 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00224 * 0.02562 * 16 15 14 19 19 O 1.42901 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99515 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.46851 * 179.97438 * 20 19 18 22 22 C 1.32574 * 119.99834 * 136.24443 * 21 20 19 23 23 C 1.47809 * 119.99987 * 8.03594 * 22 21 20 24 24 C 1.39534 * 120.14316 * 215.11448 * 23 22 21 25 25 C 1.37974 * 119.85227 * 179.72287 * 24 23 22 26 26 C 1.38341 * 120.14508 * 0.52898 * 25 24 23 27 27 C 1.38339 * 120.28478 * 359.76270 * 26 25 24 28 28 C 1.37973 * 120.14529 * 359.95846 * 27 26 25 29 29 C 1.47419 * 108.70637 * 358.94352 * 15 14 13 30 30 H 0.97009 * 119.99962 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00378 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47409 * 59.99772 * 10 9 7 33 33 H 1.09003 * 109.47212 * 299.99534 * 10 9 7 34 34 H 1.08998 * 110.72093 * 35.20712 * 13 11 10 35 35 H 1.09007 * 110.71514 * 271.94001 * 13 11 10 36 36 H 1.08994 * 109.88979 * 97.21766 * 14 13 11 37 37 H 1.09001 * 109.88421 * 218.23917 * 14 13 11 38 38 H 1.08999 * 109.47176 * 300.00426 * 18 16 15 39 39 H 1.09001 * 109.46986 * 60.00210 * 18 16 15 40 40 H 1.08992 * 109.47718 * 300.00561 * 20 19 18 41 41 H 1.09001 * 109.46743 * 60.00609 * 20 19 18 42 42 H 1.08003 * 120.00482 * 316.25148 * 21 20 19 43 43 H 1.07996 * 120.00178 * 188.03888 * 22 21 20 44 44 H 1.07998 * 120.07169 * 359.96701 * 24 23 22 45 45 H 1.08001 * 119.92586 * 180.27061 * 25 24 23 46 46 H 1.08002 * 119.85738 * 179.74788 * 26 25 24 47 47 H 1.08007 * 119.92896 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.07023 * 180.02562 * 28 27 26 49 49 H 1.08993 * 110.36770 * 142.96729 * 29 15 14 50 50 H 1.09008 * 110.36218 * 265.18192 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6162 -2.1914 -0.0009 12 1 5.8820 -1.4924 0.7921 13 6 6.4267 -3.5087 0.1242 14 6 7.7662 -3.1563 -0.5561 15 7 7.5141 -2.0194 -1.4537 16 6 8.4376 -1.4002 -2.2154 17 8 8.1154 -0.4679 -2.9211 18 6 9.8706 -1.8662 -2.1903 19 8 10.6499 -1.0577 -3.0741 20 6 12.0319 -1.4179 -3.1246 21 6 12.7540 -0.5057 -4.0823 22 6 13.9347 -0.0002 -3.7536 23 6 14.6243 -0.4668 -2.5324 24 6 15.3851 0.4235 -1.7738 25 6 16.0216 -0.0172 -0.6317 26 6 15.9157 -1.3410 -0.2442 27 6 15.1679 -2.2301 -0.9952 28 6 14.5217 -1.8009 -2.1362 29 6 6.0841 -1.6684 -1.3819 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8490 -3.0416 -0.8918 33 1 3.8484 -3.0435 0.8882 34 1 5.9273 -4.3204 -0.4047 35 1 6.5824 -3.7676 1.1715 36 1 8.5027 -2.8773 0.1974 37 1 8.1273 -4.0106 -1.1287 38 1 10.2633 -1.7789 -1.1773 39 1 9.9198 -2.9069 -2.5107 40 1 12.4690 -1.3215 -2.1308 41 1 12.1263 -2.4492 -3.4645 42 1 12.3097 -0.2636 -5.0365 43 1 14.3926 0.7526 -4.3781 44 1 15.4723 1.4561 -2.0777 45 1 16.6072 0.6719 -0.0412 46 1 16.4192 -1.6819 0.6484 47 1 15.0894 -3.2625 -0.6876 48 1 13.9379 -2.4959 -2.7214 49 1 5.9552 -0.5878 -1.4418 50 1 5.5321 -2.1606 -2.1827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:21 Heat of formation + Delta-G solvation = -35.008185 kcal Electronic energy + Delta-G solvation = -28536.235898 eV Core-core repulsion = 24528.608439 eV Total energy + Delta-G solvation = -4007.627459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.23548 -40.37568 -39.25859 -38.34521 -36.59654 -35.62815 -34.07528 -32.52233 -31.96122 -30.92107 -30.25683 -29.37846 -27.36210 -26.41910 -24.66633 -23.44713 -23.26959 -23.22397 -21.60023 -20.69509 -20.14209 -19.59623 -18.53767 -17.89582 -17.48759 -17.39811 -17.01333 -16.64014 -16.46970 -16.23460 -15.86044 -15.67718 -15.53069 -15.03548 -14.83932 -14.69278 -14.45305 -14.28487 -14.17720 -13.89835 -13.72831 -13.54930 -13.44509 -13.33272 -13.14007 -13.03018 -12.84194 -12.55880 -12.26576 -11.98762 -11.95160 -11.87445 -11.78635 -11.68099 -11.60277 -11.14999 -11.02821 -10.92644 -10.54079 -9.79931 -9.73987 -9.31141 -9.21898 -8.05468 -5.37787 0.03299 0.49291 1.26533 1.33840 1.37698 1.42849 1.48037 1.71144 2.44545 2.85962 2.98646 3.26194 3.33555 3.58998 3.66191 3.77090 3.81010 3.95801 4.00752 4.06794 4.09675 4.17856 4.18135 4.24888 4.32825 4.32910 4.38783 4.42932 4.52836 4.58869 4.60637 4.66992 4.80879 4.82963 4.84808 4.99755 5.04633 5.07130 5.14640 5.15950 5.25357 5.38337 5.39896 5.41658 5.62110 5.64361 5.74367 5.75556 6.03979 6.10496 6.19089 6.45505 7.05371 7.05747 7.82960 7.99181 9.15927 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.001771 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.778474 B =15803.665278 C =16216.559943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.947 3.053 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.254 1.254 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.762 5.762 10 C 0.165 3.835 11 C -0.101 4.101 12 H 0.084 0.916 13 C -0.113 4.113 14 C 0.094 3.906 15 N -0.616 5.616 16 C 0.515 3.485 17 O -0.584 6.584 18 C 0.059 3.941 19 O -0.399 6.399 20 C 0.080 3.920 21 C -0.153 4.153 22 C -0.109 4.109 23 C -0.080 4.080 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.124 4.124 29 C 0.112 3.888 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.137 0.863 49 H 0.044 0.956 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.781 -10.326 -0.569 41.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.179 1.179 7 C -0.362 4.362 8 H 0.081 0.919 9 N -0.408 5.408 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.102 0.898 13 C -0.151 4.151 14 C -0.027 4.027 15 N -0.351 5.351 16 C 0.305 3.695 17 O -0.464 6.464 18 C -0.020 4.020 19 O -0.318 6.318 20 C 0.006 3.994 21 C -0.171 4.171 22 C -0.127 4.127 23 C -0.080 4.080 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.011 4.011 30 H 0.067 0.933 31 H 0.195 0.805 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.163 0.837 48 H 0.155 0.845 49 H 0.063 0.937 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 39.426 -9.778 -1.089 40.635 hybrid contribution -0.414 1.458 -0.267 1.539 sum 39.013 -8.320 -1.357 39.913 Atomic orbital electron populations 1.69863 1.06891 1.26558 1.59858 1.25424 0.96055 1.00878 1.02929 0.85528 0.78744 0.80432 0.77797 1.21303 1.21834 1.17907 1.19070 0.82713 0.93559 1.40865 0.91891 1.42819 1.02617 1.04365 1.90979 1.20778 0.88969 0.87257 0.99123 1.22480 0.94573 0.99552 0.95464 0.89765 1.22680 0.93386 0.95566 1.03452 1.22462 0.99027 0.88119 0.93090 1.48588 1.08253 1.34503 1.43763 1.20785 0.88055 0.81954 0.78753 1.90725 1.82229 1.30840 1.42615 1.22246 0.86674 0.96396 0.96714 1.87989 1.20781 1.57911 1.65131 1.22158 0.79674 0.98452 0.99160 1.23091 0.95595 0.98903 0.99467 1.21839 0.96001 0.99041 0.95772 1.19300 0.98595 0.94397 0.95743 1.21515 0.97005 0.99923 0.95551 1.21409 0.99748 0.96785 0.96846 1.21576 0.98847 0.93574 1.00404 1.21426 0.97058 1.00948 0.94986 1.21691 0.99762 0.95013 0.97701 1.22191 0.80880 0.99670 0.98311 0.93347 0.80479 0.95252 0.94001 0.89207 0.87004 0.88571 0.88035 0.87471 0.86643 0.90745 0.89815 0.86009 0.84355 0.85139 0.84399 0.84134 0.83709 0.84529 0.93750 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 47.60 27.74 68.60 1.90 49.51 16 4 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 5 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.25 -11.65 6.52 99.48 0.65 -11.00 16 7 C -0.23 -13.33 10.47 84.03 0.88 -12.44 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -35.81 5.35 -343.47 -1.84 -37.64 16 10 C 0.16 5.81 5.72 86.38 0.49 6.30 16 11 C -0.10 -2.66 3.05 -9.40 -0.03 -2.69 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.11 -1.72 6.42 31.78 0.20 -1.51 16 14 C 0.09 1.21 6.49 86.73 0.56 1.78 16 15 N -0.62 -14.88 3.33 -811.81 -2.70 -17.58 16 16 C 0.51 14.57 7.93 87.66 0.69 15.27 16 17 O -0.58 -23.82 16.75 16.01 0.27 -23.55 16 18 C 0.06 1.03 5.61 71.24 0.40 1.43 16 19 O -0.40 -9.40 9.86 -129.94 -1.28 -10.68 16 20 C 0.08 1.22 4.53 71.23 0.32 1.54 16 21 C -0.15 -2.44 9.84 24.53 0.24 -2.20 16 22 C -0.11 -1.53 9.81 23.65 0.23 -1.30 16 23 C -0.08 -1.12 5.17 -20.12 -0.10 -1.23 16 24 C -0.12 -1.60 9.79 22.52 0.22 -1.38 16 25 C -0.13 -1.44 10.03 22.23 0.22 -1.22 16 26 C -0.13 -1.23 10.04 22.32 0.22 -1.01 16 27 C -0.13 -1.20 10.03 22.23 0.22 -0.98 16 28 C -0.12 -1.42 7.42 22.52 0.17 -1.25 16 29 C 0.11 3.43 6.32 86.86 0.55 3.98 16 30 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 31 H 0.36 16.78 5.53 -92.71 -0.51 16.26 16 32 H 0.03 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 35 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.03 5.32 -2.39 -0.01 1.02 16 41 H 0.08 0.83 7.51 -2.39 -0.02 0.81 16 42 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.14 0.76 8.06 -2.91 -0.02 0.73 16 47 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 48 H 0.14 1.15 5.83 -2.91 -0.02 1.14 16 49 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 50 H 0.06 2.05 7.91 -2.38 -0.02 2.03 16 Total: -1.00 -85.07 409.74 2.98 -82.09 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.35 Total: 21.59 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.97 Total: -0.13 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -4.24 Total: -118.82 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.01 Total: -34.23 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.90 Total: 49.51 kcal Total: -85.07 2.98 -82.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.079 kcal (2) G-P(sol) polarization free energy of solvation -85.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds