Wall clock time and date at job start Wed Apr 1 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99784 * 2 1 4 4 H 1.48496 * 109.47409 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47216 * 300.00385 * 3 2 1 6 6 H 1.48503 * 109.47230 * 59.99899 * 3 2 1 7 7 C 1.38809 * 120.00669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00414 * 196.92187 * 7 2 1 9 9 N 1.36938 * 119.99631 * 16.92301 * 7 2 1 10 10 C 1.47152 * 120.98156 * 26.23537 * 9 7 2 11 11 C 1.53299 * 108.41953 * 129.46345 * 10 9 7 12 12 O 1.42963 * 109.21892 * 52.28078 * 11 10 9 13 13 C 1.42966 * 114.16814 * 297.41917 * 12 11 10 14 14 H 1.08998 * 109.51092 * 302.66057 * 13 12 11 15 15 C 1.52994 * 109.51037 * 182.55839 * 13 12 11 16 16 N 1.46501 * 109.47322 * 64.99984 * 15 13 12 17 17 C 1.34778 * 119.99788 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00112 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99701 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47187 * 179.97438 * 20 19 17 22 22 C 1.32570 * 119.99871 * 125.00002 * 21 20 19 23 23 C 1.47803 * 119.99524 * 179.97438 * 22 21 20 24 24 C 1.39533 * 120.14493 * 359.72209 * 23 22 21 25 25 C 1.37976 * 119.85713 * 179.76495 * 24 23 22 26 26 C 1.38351 * 120.13994 * 0.48726 * 25 24 23 27 27 C 1.38346 * 120.28677 * 359.76981 * 26 25 24 28 28 C 1.37973 * 120.13725 * 359.97438 * 27 26 25 29 29 C 1.47165 * 120.99161 * 206.16521 * 9 7 2 30 30 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.68620 * 9.72200 * 10 9 7 32 32 H 1.08999 * 109.68213 * 249.20661 * 10 9 7 33 33 H 1.08992 * 109.51435 * 172.20376 * 11 10 9 34 34 H 1.08999 * 109.50681 * 292.35866 * 11 10 9 35 35 H 1.09002 * 109.47206 * 185.00509 * 15 13 12 36 36 H 1.09007 * 109.47089 * 305.00115 * 15 13 12 37 37 H 0.96991 * 119.99654 * 0.02562 * 16 15 13 38 38 H 1.09001 * 109.47032 * 299.99778 * 19 17 16 39 39 H 1.08995 * 109.47405 * 59.99817 * 19 17 16 40 40 H 1.08998 * 109.46752 * 300.00226 * 20 19 17 41 41 H 1.09004 * 109.47101 * 59.99378 * 20 19 17 42 42 H 1.08001 * 119.99786 * 304.99668 * 21 20 19 43 43 H 1.08000 * 119.99902 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.07014 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.93542 * 180.23247 * 25 24 23 46 46 H 1.08005 * 119.85406 * 179.73859 * 26 25 24 47 47 H 1.07997 * 119.92711 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.06678 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.64987 * 110.81498 * 29 9 7 50 50 H 1.08997 * 109.68157 * 350.27584 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0553 -1.2221 0.2728 9 7 1.3703 -2.3625 -0.3442 10 6 0.1979 -2.3455 -1.2334 11 6 0.4246 -3.3673 -2.3534 12 8 0.7656 -4.6301 -1.7764 13 6 1.9822 -4.6213 -1.0256 14 1 2.8009 -4.2876 -1.6631 15 6 2.2764 -6.0323 -0.5126 16 7 2.5290 -6.9222 -1.6486 17 6 2.8125 -8.2225 -1.4359 18 8 2.8581 -8.6560 -0.3041 19 6 3.0729 -9.1378 -2.6045 20 6 3.3670 -10.5489 -2.0914 21 6 3.6268 -11.4643 -3.2600 22 6 4.7517 -12.1634 -3.3171 23 6 5.0062 -13.0616 -4.4630 24 6 4.0619 -13.1805 -5.4834 25 6 4.3077 -14.0170 -6.5527 26 6 5.4830 -14.7448 -6.6096 27 6 6.4209 -14.6355 -5.5985 28 6 6.1894 -13.7985 -4.5263 29 6 1.8352 -3.6636 0.1624 30 1 -0.4850 0.8400 0.0004 31 1 0.0771 -1.3509 -1.6628 32 1 -0.6953 -2.6122 -0.6684 33 1 -0.4868 -3.4703 -2.9422 34 1 1.2377 -3.0290 -2.9956 35 1 3.1545 -6.0086 0.1327 36 1 1.4197 -6.3992 0.0529 37 1 2.4928 -6.5754 -2.5537 38 1 2.1948 -9.1619 -3.2498 39 1 3.9294 -8.7706 -3.1699 40 1 4.2449 -10.5251 -1.4458 41 1 2.5102 -10.9159 -1.5262 42 1 2.8965 -11.5509 -4.0509 43 1 5.4822 -12.0766 -2.5263 44 1 3.1422 -12.6163 -5.4379 45 1 3.5794 -14.1071 -7.3450 46 1 5.6688 -15.4015 -7.4467 47 1 7.3362 -15.2066 -5.6485 48 1 6.9222 -13.7144 -3.7374 49 1 1.1073 -4.0635 0.8683 50 1 2.7987 -3.5419 0.6572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714478465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:41 Heat of formation + Delta-G solvation = -47.857861 kcal Electronic energy + Delta-G solvation = -28025.473547 eV Core-core repulsion = 24017.288884 eV Total energy + Delta-G solvation = -4008.184663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.89267 -40.07262 -39.92505 -36.67434 -36.38033 -35.70986 -33.49016 -33.23296 -32.28091 -31.81142 -30.00553 -29.11169 -27.26956 -25.41376 -24.88897 -23.73971 -23.29400 -22.53151 -21.71201 -20.94308 -20.23846 -18.90247 -18.00440 -17.98402 -17.52931 -17.14294 -16.79019 -16.60931 -16.19112 -16.13568 -15.74547 -15.51480 -15.33467 -15.06220 -14.91692 -14.65811 -14.46814 -14.35642 -14.18002 -13.86849 -13.63325 -13.38579 -13.26489 -13.11055 -12.98545 -12.71113 -12.51389 -12.47973 -12.17689 -12.08719 -12.05968 -11.88130 -11.81880 -11.67557 -11.34677 -11.04988 -10.87972 -10.79754 -10.54870 -10.07892 -9.83056 -8.97286 -8.76745 -7.92490 -5.39920 0.03621 0.53202 1.45483 1.47522 1.58090 1.60983 1.69604 2.23119 2.48082 2.77899 3.04954 3.22820 3.48402 3.66788 3.86713 3.94917 3.99537 4.05882 4.13530 4.19608 4.21953 4.26837 4.31814 4.43433 4.48684 4.52524 4.55017 4.61018 4.62579 4.69007 4.71208 4.79080 4.81455 4.89803 4.99531 5.06039 5.10014 5.18646 5.22293 5.23737 5.42008 5.46107 5.54693 5.57522 5.60481 5.65014 5.77600 5.93764 6.14005 6.24773 6.32219 6.60028 7.05101 7.29317 7.73032 8.26524 9.13709 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.001385 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.493880 B =20215.335417 C =20306.328829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.080 3.920 14 H 0.070 0.930 15 C 0.140 3.860 16 N -0.714 5.714 17 C 0.507 3.493 18 O -0.590 6.590 19 C -0.126 4.126 20 C -0.073 4.073 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.069 4.069 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.128 4.128 29 C 0.115 3.885 30 H 0.252 0.748 31 H 0.068 0.932 32 H -0.002 1.002 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.132 0.868 49 H 0.016 0.984 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -27.060 -15.326 32.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.088 0.912 15 C 0.015 3.985 16 N -0.366 5.366 17 C 0.295 3.705 18 O -0.471 6.471 19 C -0.165 4.165 20 C -0.111 4.111 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.069 4.069 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.151 4.151 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.011 4.011 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.150 0.850 49 H 0.034 0.966 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.839 -27.373 -14.531 32.515 hybrid contribution 0.052 1.678 0.264 1.700 sum 9.891 -25.695 -14.268 31.010 Atomic orbital electron populations 1.70198 1.06758 1.26017 1.55218 1.25820 0.96073 1.01601 1.00966 0.85158 0.78625 0.79504 0.76833 1.18921 1.21363 1.22088 1.19596 0.93054 0.85549 1.41453 0.90948 1.44351 1.33673 1.01857 1.53845 1.21325 0.87888 0.98478 0.90672 1.23157 1.00803 0.83573 0.94788 1.87802 1.41789 1.32008 1.69232 1.22634 0.87406 0.94237 0.93657 0.91164 1.21134 1.01172 0.86980 0.89192 1.45900 1.70972 1.09083 1.10668 1.21389 0.75109 0.82555 0.91401 1.90690 1.53596 1.76299 1.26514 1.21632 1.05996 0.93308 0.95590 1.20362 1.02638 0.92366 0.95715 1.23378 0.97215 0.95945 0.98280 1.21787 0.98571 0.97670 0.97086 1.19285 0.95080 0.97386 0.95140 1.21576 0.99567 0.99540 0.94104 1.21412 0.98032 0.96566 0.98532 1.21550 0.94233 0.99856 0.99442 1.21402 1.00222 0.98822 0.94166 1.21539 0.97005 0.96844 0.99165 1.21617 0.98687 0.86367 0.94449 0.93927 0.91418 0.98427 0.87279 0.92939 0.89723 0.92323 0.74821 0.86269 0.86586 0.91788 0.91032 0.85321 0.86211 0.84620 0.84235 0.84264 0.84290 0.85027 0.96610 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.63 11.14 21.65 0.24 -54.39 16 2 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 3 Si 0.97 43.81 29.59 68.60 2.03 45.84 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.27 -14.40 9.65 84.03 0.81 -13.59 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -30.47 3.05 -697.51 -2.13 -32.59 16 10 C 0.14 6.75 5.44 86.36 0.47 7.22 16 11 C 0.05 1.95 6.99 72.08 0.50 2.45 16 12 O -0.39 -13.45 10.33 -148.98 -1.54 -14.99 16 13 C 0.08 2.60 2.81 30.69 0.09 2.69 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.14 3.96 5.35 86.38 0.46 4.42 16 16 N -0.71 -16.21 5.50 -463.06 -2.55 -18.76 16 17 C 0.51 11.87 7.83 87.66 0.69 12.55 16 18 O -0.59 -19.07 15.98 -3.03 -0.05 -19.12 16 19 C -0.13 -1.78 5.68 29.85 0.17 -1.61 16 20 C -0.07 -1.16 4.95 29.85 0.15 -1.02 16 21 C -0.13 -1.70 8.94 24.53 0.22 -1.48 16 22 C -0.13 -1.92 9.52 23.65 0.23 -1.70 16 23 C -0.07 -1.05 5.87 -20.12 -0.12 -1.17 16 24 C -0.13 -1.76 9.40 22.52 0.21 -1.55 16 25 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 26 C -0.13 -1.51 10.04 22.32 0.22 -1.29 16 27 C -0.13 -1.55 10.03 22.23 0.22 -1.33 16 28 C -0.13 -1.79 9.79 22.52 0.22 -1.57 16 29 C 0.12 4.72 6.03 86.35 0.52 5.24 16 30 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16 32 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.42 7.46 8.47 -92.71 -0.79 6.67 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.18 7.77 -2.39 -0.02 1.16 16 41 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 42 H 0.13 1.30 6.04 -2.91 -0.02 1.28 16 43 H 0.12 1.64 7.87 -2.91 -0.02 1.62 16 44 H 0.14 1.39 6.17 -2.91 -0.02 1.37 16 45 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 46 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 48 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 2.77 7.96 -2.39 -0.02 2.76 16 Total: -1.00 -70.99 410.42 1.85 -69.14 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.14 Total: 20.17 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.70 Total: 4.71 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -4.44 Total: -105.74 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.59 Total: -34.11 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.99 1.85 -69.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714478465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.278 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds