Wall clock time and date at job start Wed Apr 1 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48495 * 109.47053 * 269.99298 * 3 2 1 5 5 H 1.48508 * 109.47332 * 29.99615 * 3 2 1 6 6 H 1.48501 * 109.47385 * 149.99180 * 3 2 1 7 7 C 1.38809 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00458 * 190.18978 * 7 2 1 9 9 N 1.36942 * 120.00049 * 10.20024 * 7 2 1 10 10 C 1.47145 * 120.98056 * 209.91818 * 9 7 2 11 11 C 1.53299 * 108.38384 * 230.55240 * 10 9 7 12 12 O 1.42970 * 109.22164 * 307.69945 * 11 10 9 13 13 C 1.42960 * 114.16563 * 62.57922 * 12 11 10 14 14 H 1.09001 * 109.51081 * 57.39052 * 13 12 11 15 15 C 1.52997 * 109.51143 * 177.49276 * 13 12 11 16 16 N 1.46498 * 109.47135 * 300.00071 * 15 13 12 17 17 C 1.34780 * 119.99893 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00031 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99722 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46659 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46831 * 179.97438 * 20 19 17 22 22 C 1.32572 * 119.99640 * 127.62367 * 21 20 19 23 23 C 1.47812 * 120.00311 * 8.03364 * 22 21 20 24 24 C 1.39535 * 120.14277 * 217.93226 * 23 22 21 25 25 C 1.37977 * 119.85475 * 179.76478 * 24 23 22 26 26 C 1.38346 * 120.13998 * 0.49009 * 25 24 23 27 27 C 1.38344 * 120.28607 * 359.76568 * 26 25 24 28 28 C 1.37977 * 120.14397 * 359.97438 * 27 26 25 29 29 C 1.47147 * 120.97911 * 29.93744 * 9 7 2 30 30 H 0.96998 * 119.99583 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.68288 * 110.82911 * 10 9 7 32 32 H 1.09001 * 109.68466 * 350.27777 * 10 9 7 33 33 H 1.09003 * 109.51276 * 187.77522 * 11 10 9 34 34 H 1.08996 * 109.51360 * 67.62300 * 11 10 9 35 35 H 1.09000 * 109.47320 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.46970 * 60.00455 * 15 13 12 37 37 H 0.97002 * 120.00063 * 359.97438 * 16 15 13 38 38 H 1.08997 * 109.47171 * 60.00185 * 19 17 16 39 39 H 1.08995 * 109.47057 * 299.99268 * 19 17 16 40 40 H 1.09000 * 109.47643 * 299.99736 * 20 19 17 41 41 H 1.08997 * 109.47146 * 60.00209 * 20 19 17 42 42 H 1.08000 * 120.00266 * 307.61742 * 21 20 19 43 43 H 1.08000 * 119.99757 * 188.04252 * 22 21 20 44 44 H 1.08000 * 120.06980 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.92682 * 180.23272 * 25 24 23 46 46 H 1.07996 * 119.85432 * 179.73883 * 26 25 24 47 47 H 1.08001 * 119.92988 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.07267 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.68853 * 9.72443 * 29 9 7 50 50 H 1.09009 * 109.68553 * 249.16918 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0775 -1.2095 0.1660 9 7 1.3419 -2.3788 -0.2090 10 6 1.8151 -3.6360 0.3915 11 6 1.8966 -4.6979 -0.7111 12 8 0.6465 -4.7555 -1.4024 13 6 0.2929 -3.5442 -2.0744 14 1 1.0787 -3.2772 -2.7811 15 6 -1.0247 -3.7427 -2.8262 16 7 -0.8691 -4.8181 -3.8088 17 6 -1.9077 -5.1709 -4.5919 18 8 -2.9710 -4.5977 -4.4835 19 6 -1.7477 -6.2775 -5.6023 20 6 -3.0658 -6.4768 -6.3533 21 6 -2.9057 -7.5830 -7.3641 22 6 -3.7652 -8.5921 -7.3841 23 6 -4.9776 -8.5472 -6.5396 24 6 -5.4420 -9.7070 -5.9182 25 6 -6.5716 -9.6572 -5.1273 26 6 -7.2490 -8.4629 -4.9580 27 6 -6.7967 -7.3106 -5.5757 28 6 -5.6654 -7.3458 -6.3648 29 6 0.1294 -2.4233 -1.0415 30 1 -0.4849 0.8401 -0.0004 31 1 1.1164 -3.9605 1.1627 32 1 2.8018 -3.4851 0.8295 33 1 2.1116 -5.6693 -0.2659 34 1 2.6885 -4.4346 -1.4123 35 1 -1.2939 -2.8187 -3.3379 36 1 -1.8103 -4.0079 -2.1186 37 1 -0.0185 -5.2763 -3.8957 38 1 -1.4787 -7.2012 -5.0899 39 1 -0.9624 -6.0125 -6.3101 40 1 -3.8510 -6.7420 -5.6453 41 1 -3.3353 -5.5532 -6.8656 42 1 -2.0908 -7.5537 -8.0722 43 1 -3.5796 -9.4471 -8.0173 44 1 -4.9166 -10.6408 -6.0534 45 1 -6.9299 -10.5534 -4.6428 46 1 -8.1350 -8.4301 -4.3414 47 1 -7.3302 -6.3814 -5.4399 48 1 -5.3135 -6.4456 -6.8467 49 1 -0.0003 -1.4693 -1.5526 50 1 -0.7392 -2.6256 -0.4148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714478467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:45 Heat of formation + Delta-G solvation = -41.320841 kcal Electronic energy + Delta-G solvation = -29082.000448 eV Core-core repulsion = 25074.099251 eV Total energy + Delta-G solvation = -4007.901197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.94548 -40.25138 -39.88973 -36.68179 -36.38541 -35.76654 -33.29490 -33.11335 -32.31047 -31.75218 -30.01544 -29.05796 -27.44943 -25.53968 -24.97618 -23.40241 -23.37904 -22.82770 -21.68419 -20.99776 -20.10225 -18.93337 -18.05932 -17.54508 -17.34968 -17.13474 -16.86787 -16.69603 -16.29446 -16.07967 -15.98392 -15.52255 -15.29261 -15.15751 -15.04556 -14.63653 -14.49534 -14.41952 -14.25684 -13.93050 -13.51508 -13.40547 -13.17990 -12.98107 -12.88896 -12.72635 -12.56514 -12.53092 -12.18505 -12.12251 -12.09338 -11.91884 -11.86350 -11.55954 -11.33297 -10.96509 -10.74903 -10.60082 -10.57265 -10.09553 -9.76943 -9.09517 -8.72113 -7.91908 -5.45742 0.14795 0.51971 1.45906 1.46239 1.49079 1.55896 1.68879 2.22253 2.46710 2.78846 2.96030 3.24101 3.49775 3.75560 3.89138 4.03039 4.05188 4.06451 4.07497 4.15342 4.24928 4.26224 4.31910 4.41080 4.46699 4.51514 4.59564 4.60478 4.63805 4.67356 4.73466 4.77830 4.84633 4.97702 5.02326 5.06780 5.11346 5.17298 5.22299 5.27331 5.41606 5.50018 5.53632 5.54655 5.58103 5.64554 5.73854 5.94931 6.14483 6.26522 6.33207 6.60326 7.05010 7.29723 7.72178 8.27314 9.13287 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.001869 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.704216 B =14977.955724 C =15228.334956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.615 5.615 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.065 0.935 15 C 0.143 3.857 16 N -0.711 5.711 17 C 0.503 3.497 18 O -0.591 6.591 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.071 4.071 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.140 4.140 28 C -0.121 4.121 29 C 0.160 3.840 30 H 0.251 0.749 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.416 0.584 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.067 0.933 50 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 -21.314 -16.070 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.802 3.198 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.396 4.396 8 H 0.092 0.908 9 N -0.339 5.339 10 C -0.024 4.024 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.017 3.983 14 H 0.083 0.917 15 C 0.018 3.982 16 N -0.363 5.363 17 C 0.292 3.708 18 O -0.471 6.471 19 C -0.163 4.163 20 C -0.130 4.130 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.071 4.071 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.139 4.139 29 C 0.033 3.967 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.153 0.847 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.085 0.915 50 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -5.624 -20.927 -15.949 26.906 hybrid contribution 0.422 1.573 0.640 1.750 sum -5.202 -19.355 -15.309 25.219 Atomic orbital electron populations 1.70144 1.06805 1.26065 1.55373 1.26002 0.96238 1.01861 1.00558 0.85167 0.77984 0.78971 0.77704 1.20873 1.22297 1.19008 1.19557 0.91346 0.84595 1.44062 0.90826 1.44303 1.29768 1.04419 1.55434 1.21842 0.98581 0.87092 0.94901 1.23088 0.85079 1.00021 0.93852 1.87791 1.40017 1.34146 1.68958 1.22756 0.95534 0.86277 0.93686 0.91664 1.21035 0.95908 0.91021 0.90234 1.45861 1.15609 1.37483 1.37357 1.21511 0.82860 0.84614 0.81850 1.90689 1.28705 1.56817 1.70926 1.21633 1.00783 0.96852 0.97032 1.20820 0.96899 0.98164 0.97123 1.23384 0.99939 0.94001 0.97510 1.21860 0.93391 0.99841 0.99947 1.19353 0.96160 0.93326 0.98289 1.21565 0.96705 0.98325 0.97176 1.21415 0.95795 0.98592 0.98993 1.21490 1.00763 0.92939 0.99839 1.21352 0.97112 0.99176 0.98163 1.21577 0.95376 0.97723 0.99211 1.21088 0.87789 0.96618 0.91196 0.93946 0.96835 0.90870 0.86086 0.92637 0.91002 0.92996 0.74734 0.87038 0.85744 0.91390 0.91374 0.83694 0.83957 0.83992 0.83961 0.84688 0.85688 0.85959 0.91486 0.98511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 11.01 21.65 0.24 -55.46 16 2 C -0.05 -2.84 5.08 84.86 0.43 -2.40 16 3 Si 0.97 44.29 29.57 68.60 2.03 46.32 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.27 -14.38 9.64 84.03 0.81 -13.56 16 8 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 9 N -0.61 -30.81 3.04 -697.55 -2.12 -32.93 16 10 C 0.10 4.09 6.73 86.36 0.58 4.67 16 11 C 0.06 1.80 6.99 72.08 0.50 2.30 16 12 O -0.39 -13.64 10.13 -148.98 -1.51 -15.15 16 13 C 0.08 2.88 2.87 30.69 0.09 2.97 16 14 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 15 C 0.14 4.99 5.37 86.38 0.46 5.45 16 16 N -0.71 -19.22 5.45 -463.06 -2.52 -21.74 16 17 C 0.50 13.89 7.83 87.66 0.69 14.58 16 18 O -0.59 -21.93 15.98 -3.04 -0.05 -21.97 16 19 C -0.12 -2.12 5.68 29.85 0.17 -1.95 16 20 C -0.09 -1.77 3.25 29.85 0.10 -1.67 16 21 C -0.13 -1.75 9.46 24.53 0.23 -1.52 16 22 C -0.13 -1.89 9.79 23.65 0.23 -1.66 16 23 C -0.07 -1.34 5.14 -20.12 -0.10 -1.44 16 24 C -0.12 -2.01 9.79 22.52 0.22 -1.79 16 25 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 26 C -0.13 -2.45 10.04 22.32 0.22 -2.23 16 27 C -0.14 -2.96 10.03 22.23 0.22 -2.74 16 28 C -0.12 -2.60 7.32 22.52 0.16 -2.44 16 29 C 0.16 7.80 4.68 86.35 0.40 8.21 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 33 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.42 8.84 8.35 -92.71 -0.77 8.06 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.64 4.81 -2.39 -0.01 1.63 16 41 H 0.07 1.44 7.94 -2.39 -0.02 1.42 16 42 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 48 H 0.12 2.63 6.34 -2.91 -0.02 2.61 16 49 H 0.07 3.66 6.21 -2.39 -0.01 3.64 16 50 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 Total: -1.00 -73.06 405.61 1.87 -71.19 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.15 Total: 26.90 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.65 Total: 2.84 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.41 Total: -110.13 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.56 Total: -37.12 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -73.06 1.87 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714478467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.873 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds