Wall clock time and date at job start Wed Apr 1 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46828 * 240.00511 * 3 2 1 5 5 H 1.48504 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47375 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99604 * 189.54160 * 7 2 1 9 9 N 1.36929 * 120.00276 * 9.53925 * 7 2 1 10 10 C 1.47153 * 120.98134 * 29.38882 * 9 7 2 11 11 C 1.53297 * 108.41587 * 129.46515 * 10 9 7 12 12 O 1.42961 * 109.22203 * 52.28293 * 11 10 9 13 13 C 1.42961 * 114.16747 * 297.42174 * 12 11 10 14 14 H 1.09005 * 109.50937 * 302.65074 * 13 12 11 15 15 C 1.53002 * 109.51217 * 182.55944 * 13 12 11 16 16 N 1.46492 * 109.47330 * 64.99545 * 15 13 12 17 17 C 1.34783 * 119.99717 * 180.02562 * 16 15 13 18 18 O 1.21273 * 120.00370 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99702 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47315 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47315 * 180.02562 * 20 19 17 22 22 C 1.32566 * 120.00041 * 127.05947 * 21 20 19 23 23 C 1.47822 * 119.99942 * 8.19989 * 22 21 20 24 24 C 1.39535 * 120.13854 * 221.32580 * 23 22 21 25 25 C 1.37980 * 119.85135 * 179.76759 * 24 23 22 26 26 C 1.38346 * 120.13986 * 0.48595 * 25 24 23 27 27 C 1.38339 * 120.28898 * 359.76511 * 26 25 24 28 28 C 1.37978 * 120.14366 * 359.97438 * 27 26 25 29 29 C 1.47165 * 120.99287 * 209.32119 * 9 7 2 30 30 H 0.97000 * 119.99729 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.68385 * 9.72318 * 10 9 7 32 32 H 1.08998 * 109.68200 * 249.20800 * 10 9 7 33 33 H 1.09001 * 109.51240 * 172.20504 * 11 10 9 34 34 H 1.08991 * 109.51105 * 292.35855 * 11 10 9 35 35 H 1.08995 * 109.46922 * 184.99763 * 15 13 12 36 36 H 1.09006 * 109.46702 * 304.99326 * 15 13 12 37 37 H 0.96994 * 120.00378 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47636 * 299.99630 * 19 17 16 39 39 H 1.09006 * 109.47421 * 59.99905 * 19 17 16 40 40 H 1.08995 * 109.46922 * 300.00210 * 20 19 17 41 41 H 1.09006 * 109.46702 * 59.99773 * 20 19 17 42 42 H 1.07998 * 119.99871 * 307.05299 * 21 20 19 43 43 H 1.07993 * 120.00062 * 188.20782 * 22 21 20 44 44 H 1.07997 * 120.07459 * 359.97438 * 24 23 22 45 45 H 1.07990 * 119.92655 * 180.23112 * 25 24 23 46 46 H 1.07995 * 119.85243 * 179.74688 * 26 25 24 47 47 H 1.07998 * 119.93380 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.07767 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.65024 * 110.81199 * 29 9 7 50 50 H 1.08994 * 109.68467 * 350.27833 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0790 -1.2087 0.1545 9 7 1.3398 -2.3798 -0.1976 10 6 0.1124 -2.4262 -1.0080 11 6 0.2578 -3.5472 -2.0434 12 8 0.6252 -4.7579 -1.3778 13 6 1.8879 -4.6987 -0.7102 14 1 2.6663 -4.4349 -1.4262 15 6 2.2035 -6.0622 -0.0918 16 7 2.3747 -7.0535 -1.1567 17 6 2.6600 -8.3337 -0.8461 18 8 2.7755 -8.6648 0.3148 19 6 2.8367 -9.3533 -1.9416 20 6 3.1521 -10.7168 -1.3233 21 6 3.3295 -11.7363 -2.4188 22 6 4.4252 -12.4814 -2.4598 23 6 5.3868 -12.4440 -1.3378 24 6 6.7589 -12.4318 -1.5912 25 6 7.6512 -12.3921 -0.5395 26 6 7.1882 -12.3745 0.7641 27 6 5.8292 -12.3916 1.0221 28 6 4.9263 -12.4260 -0.0207 29 6 1.8261 -3.6367 0.3935 30 1 -0.4850 0.8401 0.0004 31 1 -0.0280 -1.4724 -1.5167 32 1 -0.7444 -2.6288 -0.3653 33 1 -0.6908 -3.6898 -2.5612 34 1 1.0301 -3.2791 -2.7641 35 1 3.1218 -5.9929 0.4912 36 1 1.3824 -6.3651 0.5581 37 1 2.2820 -6.7888 -2.0852 38 1 1.9188 -9.4223 -2.5254 39 1 3.6583 -9.0504 -2.5909 40 1 4.0702 -10.6475 -0.7398 41 1 2.3309 -11.0199 -0.6738 42 1 2.5639 -11.8600 -3.1704 43 1 4.6153 -13.1155 -3.3130 44 1 7.1216 -12.4501 -2.6082 45 1 8.7133 -12.3789 -0.7343 46 1 7.8908 -12.3475 1.5838 47 1 5.4740 -12.3781 2.0419 48 1 3.8656 -12.4398 0.1819 49 1 1.1423 -3.9616 1.1777 50 1 2.8205 -3.4846 0.8128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714478470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:50 Heat of formation + Delta-G solvation = -23.529071 kcal Electronic energy + Delta-G solvation = -28850.037360 eV Core-core repulsion = 24842.907672 eV Total energy + Delta-G solvation = -4007.129688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.90897 -39.43453 -38.44185 -35.93732 -34.85725 -34.27043 -32.32627 -31.52302 -31.14916 -30.63336 -29.30365 -27.54946 -25.90903 -24.42820 -23.19122 -22.74416 -22.43051 -21.67449 -20.42005 -19.55281 -19.43640 -17.17586 -16.92809 -16.60570 -16.30989 -15.92102 -15.85008 -15.53310 -15.14770 -14.96488 -14.56361 -14.43480 -14.09649 -13.80229 -13.76335 -13.63045 -13.24466 -13.09222 -13.01824 -12.82398 -12.69817 -12.37574 -12.11716 -11.93241 -11.55658 -11.44027 -11.24380 -11.07888 -10.95287 -10.89545 -10.72944 -10.41738 -10.28450 -10.05691 -10.00408 -9.82453 -9.63839 -9.12297 -9.06709 -8.94375 -8.58322 -8.50286 -6.73425 -5.85850 -3.35166 0.79310 1.17884 2.05422 2.71034 3.27683 3.33040 3.38445 3.39222 3.60215 4.22684 4.40040 4.44397 4.60203 4.69454 4.70818 4.78208 4.89281 4.96149 5.08341 5.16160 5.20664 5.24885 5.32215 5.36350 5.40677 5.48175 5.51918 5.69177 5.72547 5.79591 5.82361 5.86789 5.93276 6.03151 6.12733 6.14497 6.18343 6.28976 6.29712 6.34849 6.35887 6.48122 6.52101 6.55616 6.74276 6.76054 7.11059 7.53569 7.59087 7.67175 7.84673 8.29556 8.33871 9.10183 9.70770 10.28945 11.21542 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.001750 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.798076 B =15997.518265 C =16794.220149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.909 3.091 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.057 0.943 15 C 0.130 3.870 16 N -0.722 5.722 17 C 0.509 3.491 18 O -0.546 6.546 19 C -0.136 4.136 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.058 4.058 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.103 4.103 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.127 0.873 49 H 0.030 0.970 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 -25.013 -6.642 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.739 3.261 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.075 0.925 15 C 0.006 3.994 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.424 6.424 19 C -0.176 4.176 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.121 4.121 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.145 0.855 49 H 0.048 0.952 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.135 -25.213 -5.775 27.431 hybrid contribution 0.424 1.402 -0.527 1.556 sum 9.560 -23.811 -6.302 26.421 Atomic orbital electron populations 1.69953 1.05264 1.25757 1.54035 1.25172 0.95514 0.98477 1.00368 0.86271 0.78767 0.82929 0.78170 1.20932 1.21501 1.20762 1.19149 0.90712 0.83528 1.45103 0.91524 1.44016 1.28309 1.03015 1.56468 1.21479 0.88354 0.97121 0.91667 1.23351 0.98761 0.86294 0.95514 1.87784 1.36909 1.36054 1.70197 1.22798 0.86522 0.94158 0.95994 0.92463 1.21399 1.01796 0.86292 0.89905 1.45993 1.71731 1.08758 1.10806 1.20646 0.76298 0.83014 0.90483 1.90693 1.50852 1.79910 1.20906 1.21607 1.03988 0.94281 0.97683 1.20816 1.04139 0.91330 0.96534 1.23333 0.96746 0.95998 0.99318 1.21656 0.94456 1.01347 0.97249 1.19073 0.93216 1.00329 0.93193 1.21247 0.92408 1.00275 0.99103 1.21083 0.99577 1.00656 0.92812 1.21221 0.95742 1.00104 0.96825 1.21139 0.93306 1.00002 0.99284 1.21432 1.00051 0.98848 0.91773 1.21452 0.98894 0.87217 0.93020 0.93384 0.88463 0.95426 0.90094 0.94191 0.90269 0.90759 0.76324 0.88843 0.88980 0.89295 0.90188 0.86384 0.86164 0.86070 0.86133 0.86187 0.85884 0.85546 0.95231 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.85 10.92 55.49 0.61 -25.24 16 2 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 3 Si 0.91 21.32 29.56 -169.99 -5.03 16.29 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.90 9.66 -15.06 -0.15 -7.05 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 N -0.59 -14.80 3.05 -171.82 -0.52 -15.32 16 10 C 0.14 3.30 5.39 -3.53 -0.02 3.28 16 11 C 0.04 0.73 6.99 37.31 0.26 0.99 16 12 O -0.39 -7.22 10.33 -35.23 -0.36 -7.59 16 13 C 0.07 1.13 2.81 -26.58 -0.07 1.05 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.97 5.35 -4.04 -0.02 1.95 16 16 N -0.72 -9.30 5.50 -60.30 -0.33 -9.63 16 17 C 0.51 6.66 7.83 -10.98 -0.09 6.58 16 18 O -0.55 -9.16 15.98 5.56 0.09 -9.07 16 19 C -0.14 -1.23 5.68 -27.88 -0.16 -1.39 16 20 C -0.09 -0.85 3.36 -27.88 -0.09 -0.94 16 21 C -0.14 -1.01 9.45 -36.22 -0.34 -1.35 16 22 C -0.13 -0.99 9.77 -37.57 -0.37 -1.36 16 23 C -0.06 -0.53 5.03 -105.01 -0.53 -1.06 16 24 C -0.11 -0.95 9.79 -39.19 -0.38 -1.34 16 25 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 26 C -0.12 -1.03 10.04 -39.50 -0.40 -1.43 16 27 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 28 C -0.10 -0.99 7.37 -39.19 -0.29 -1.28 16 29 C 0.12 2.53 6.02 -3.53 -0.02 2.51 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.10 2.52 6.14 -51.93 -0.32 2.20 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 4.43 8.47 -40.82 -0.35 4.09 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.99 4.95 -51.93 -0.26 0.73 16 41 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.13 1.15 6.73 -52.49 -0.35 0.80 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -32.23 406.43 -10.97 -43.20 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.99 Total: 4.97 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.55 Total: -3.73 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.25 Total: -50.20 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.28 Total: -16.66 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.23 -10.97 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714478470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.668 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds