Wall clock time and date at job start Wed Apr 1 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46828 * 240.00511 * 3 2 1 5 5 H 1.48504 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47375 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99604 * 189.54160 * 7 2 1 9 9 N 1.36929 * 120.00276 * 9.53925 * 7 2 1 10 10 C 1.47153 * 120.98134 * 29.38882 * 9 7 2 11 11 C 1.53297 * 108.41587 * 129.46515 * 10 9 7 12 12 O 1.42961 * 109.22203 * 52.28293 * 11 10 9 13 13 C 1.42961 * 114.16747 * 297.42174 * 12 11 10 14 14 H 1.09005 * 109.50937 * 302.65074 * 13 12 11 15 15 C 1.53002 * 109.51217 * 182.55944 * 13 12 11 16 16 N 1.46492 * 109.47330 * 64.99545 * 15 13 12 17 17 C 1.34783 * 119.99717 * 180.02562 * 16 15 13 18 18 O 1.21273 * 120.00370 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99702 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47315 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47315 * 180.02562 * 20 19 17 22 22 C 1.32566 * 120.00041 * 127.05947 * 21 20 19 23 23 C 1.47822 * 119.99942 * 8.19989 * 22 21 20 24 24 C 1.39535 * 120.13854 * 221.32580 * 23 22 21 25 25 C 1.37980 * 119.85135 * 179.76759 * 24 23 22 26 26 C 1.38346 * 120.13986 * 0.48595 * 25 24 23 27 27 C 1.38339 * 120.28898 * 359.76511 * 26 25 24 28 28 C 1.37978 * 120.14366 * 359.97438 * 27 26 25 29 29 C 1.47165 * 120.99287 * 209.32119 * 9 7 2 30 30 H 0.97000 * 119.99729 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.68385 * 9.72318 * 10 9 7 32 32 H 1.08998 * 109.68200 * 249.20800 * 10 9 7 33 33 H 1.09001 * 109.51240 * 172.20504 * 11 10 9 34 34 H 1.08991 * 109.51105 * 292.35855 * 11 10 9 35 35 H 1.08995 * 109.46922 * 184.99763 * 15 13 12 36 36 H 1.09006 * 109.46702 * 304.99326 * 15 13 12 37 37 H 0.96994 * 120.00378 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47636 * 299.99630 * 19 17 16 39 39 H 1.09006 * 109.47421 * 59.99905 * 19 17 16 40 40 H 1.08995 * 109.46922 * 300.00210 * 20 19 17 41 41 H 1.09006 * 109.46702 * 59.99773 * 20 19 17 42 42 H 1.07998 * 119.99871 * 307.05299 * 21 20 19 43 43 H 1.07993 * 120.00062 * 188.20782 * 22 21 20 44 44 H 1.07997 * 120.07459 * 359.97438 * 24 23 22 45 45 H 1.07990 * 119.92655 * 180.23112 * 25 24 23 46 46 H 1.07995 * 119.85243 * 179.74688 * 26 25 24 47 47 H 1.07998 * 119.93380 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.07767 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.65024 * 110.81199 * 29 9 7 50 50 H 1.08994 * 109.68467 * 350.27833 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0790 -1.2087 0.1545 9 7 1.3398 -2.3798 -0.1976 10 6 0.1124 -2.4262 -1.0080 11 6 0.2578 -3.5472 -2.0434 12 8 0.6252 -4.7579 -1.3778 13 6 1.8879 -4.6987 -0.7102 14 1 2.6663 -4.4349 -1.4262 15 6 2.2035 -6.0622 -0.0918 16 7 2.3747 -7.0535 -1.1567 17 6 2.6600 -8.3337 -0.8461 18 8 2.7755 -8.6648 0.3148 19 6 2.8367 -9.3533 -1.9416 20 6 3.1521 -10.7168 -1.3233 21 6 3.3295 -11.7363 -2.4188 22 6 4.4252 -12.4814 -2.4598 23 6 5.3868 -12.4440 -1.3378 24 6 6.7589 -12.4318 -1.5912 25 6 7.6512 -12.3921 -0.5395 26 6 7.1882 -12.3745 0.7641 27 6 5.8292 -12.3916 1.0221 28 6 4.9263 -12.4260 -0.0207 29 6 1.8261 -3.6367 0.3935 30 1 -0.4850 0.8401 0.0004 31 1 -0.0280 -1.4724 -1.5167 32 1 -0.7444 -2.6288 -0.3653 33 1 -0.6908 -3.6898 -2.5612 34 1 1.0301 -3.2791 -2.7641 35 1 3.1218 -5.9929 0.4912 36 1 1.3824 -6.3651 0.5581 37 1 2.2820 -6.7888 -2.0852 38 1 1.9188 -9.4223 -2.5254 39 1 3.6583 -9.0504 -2.5909 40 1 4.0702 -10.6475 -0.7398 41 1 2.3309 -11.0199 -0.6738 42 1 2.5639 -11.8600 -3.1704 43 1 4.6153 -13.1155 -3.3130 44 1 7.1216 -12.4501 -2.6082 45 1 8.7133 -12.3789 -0.7343 46 1 7.8908 -12.3475 1.5838 47 1 5.4740 -12.3781 2.0419 48 1 3.8656 -12.4398 0.1819 49 1 1.1423 -3.9616 1.1777 50 1 2.8205 -3.4846 0.8128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714478470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:49 Heat of formation + Delta-G solvation = -42.331587 kcal Electronic energy + Delta-G solvation = -28850.852698 eV Core-core repulsion = 24842.907672 eV Total energy + Delta-G solvation = -4007.945026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.93556 -40.23253 -39.89175 -36.69288 -36.39947 -35.71338 -33.43067 -33.01946 -32.20837 -31.74892 -30.03829 -29.17246 -27.35410 -25.51043 -24.90198 -23.44902 -23.37059 -22.86205 -21.72992 -20.95668 -20.06505 -18.90643 -18.03886 -17.59606 -17.35423 -17.05779 -16.85855 -16.78906 -16.27093 -16.13269 -15.88691 -15.50542 -15.35415 -15.22576 -15.00108 -14.64566 -14.47938 -14.39227 -14.24753 -13.91634 -13.47813 -13.37008 -13.26278 -12.98915 -12.87522 -12.71634 -12.56141 -12.51553 -12.18170 -12.11498 -12.09147 -11.91752 -11.87602 -11.57987 -11.36492 -10.93175 -10.76698 -10.58035 -10.52752 -10.08472 -9.77394 -9.11827 -8.72122 -7.91101 -5.44416 0.17048 0.52637 1.46392 1.47019 1.48147 1.55189 1.69380 2.23244 2.47584 2.77708 2.95842 3.24659 3.48787 3.75666 3.90008 3.98725 4.03851 4.06095 4.08695 4.15788 4.23598 4.25416 4.32219 4.41987 4.49460 4.52162 4.60599 4.62425 4.64771 4.70725 4.72005 4.78059 4.81211 4.90308 5.02314 5.05869 5.12067 5.18081 5.25208 5.27570 5.42762 5.50651 5.55465 5.55973 5.61890 5.65091 5.74547 5.94148 6.14772 6.25685 6.34045 6.59472 7.06327 7.28985 7.72459 8.27180 9.13829 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.001750 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.798076 B =15997.518265 C =16794.220149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.071 0.929 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.053 3.947 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.069 0.931 15 C 0.141 3.859 16 N -0.715 5.715 17 C 0.506 3.494 18 O -0.588 6.588 19 C -0.126 4.126 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.119 4.119 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.071 0.929 32 H -0.003 1.003 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.415 0.585 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.016 0.984 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.664 -26.089 -8.915 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.803 3.197 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.087 0.913 15 C 0.016 3.984 16 N -0.367 5.367 17 C 0.294 3.706 18 O -0.469 6.469 19 C -0.165 4.165 20 C -0.127 4.127 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.070 4.070 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.137 4.137 29 C -0.011 4.011 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.251 0.749 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.153 0.847 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.034 0.966 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.528 -26.317 -8.077 29.473 hybrid contribution 0.004 1.699 0.263 1.719 sum 10.532 -24.618 -7.814 27.893 Atomic orbital electron populations 1.70132 1.06692 1.26104 1.55365 1.25968 0.96308 1.01726 1.00585 0.85228 0.77415 0.78641 0.78442 1.19909 1.21971 1.20238 1.19511 0.91205 0.84607 1.44398 0.91084 1.44292 1.28420 1.03794 1.57293 1.21343 0.87131 0.97802 0.92022 1.23179 1.00669 0.84578 0.94002 1.87799 1.37492 1.35437 1.70098 1.22623 0.86424 0.94074 0.94781 0.91283 1.21122 1.01359 0.85710 0.90232 1.45896 1.71482 1.08420 1.10852 1.21399 0.74972 0.83313 0.90877 1.90682 1.52662 1.80533 1.23021 1.21633 1.06048 0.92448 0.96393 1.20733 1.02648 0.92328 0.96980 1.23378 0.97231 0.95294 0.99001 1.21847 0.94169 1.01723 0.97337 1.19335 0.94070 1.00183 0.93413 1.21552 0.92258 0.99894 1.00180 1.21409 1.00778 0.99984 0.92617 1.21489 0.95724 1.00013 0.97791 1.21350 0.93968 1.00601 0.99651 1.21523 0.99962 0.99718 0.92510 1.21609 0.98668 0.86772 0.94005 0.93893 0.91102 0.98497 0.87311 0.93058 0.89901 0.92335 0.74861 0.86155 0.86935 0.91397 0.91484 0.83940 0.84147 0.84193 0.84083 0.84654 0.85469 0.86045 0.96622 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 10.92 21.65 0.24 -54.52 16 2 C -0.05 -2.78 5.10 84.86 0.43 -2.35 16 3 Si 0.98 44.00 29.56 68.60 2.03 46.03 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.27 -14.50 9.66 84.04 0.81 -13.69 16 8 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 9 N -0.61 -30.78 3.05 -697.53 -2.13 -32.91 16 10 C 0.14 6.85 5.39 86.35 0.47 7.31 16 11 C 0.05 1.94 6.99 72.08 0.50 2.44 16 12 O -0.39 -13.68 10.33 -148.98 -1.54 -15.22 16 13 C 0.08 2.67 2.81 30.69 0.09 2.76 16 14 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 15 C 0.14 4.10 5.35 86.38 0.46 4.57 16 16 N -0.71 -16.95 5.50 -463.07 -2.55 -19.50 16 17 C 0.51 12.49 7.83 87.66 0.69 13.18 16 18 O -0.59 -19.73 15.98 -3.01 -0.05 -19.78 16 19 C -0.13 -1.94 5.68 29.85 0.17 -1.77 16 20 C -0.09 -1.56 3.36 29.85 0.10 -1.46 16 21 C -0.13 -1.63 9.45 24.53 0.23 -1.40 16 22 C -0.13 -1.76 9.77 23.66 0.23 -1.53 16 23 C -0.07 -1.21 5.03 -20.12 -0.10 -1.31 16 24 C -0.12 -1.88 9.79 22.52 0.22 -1.66 16 25 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 26 C -0.13 -2.21 10.04 22.32 0.22 -1.99 16 27 C -0.14 -2.61 10.03 22.23 0.22 -2.39 16 28 C -0.12 -2.33 7.37 22.52 0.17 -2.16 16 29 C 0.12 4.82 6.02 86.35 0.52 5.34 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.07 3.77 6.14 -2.39 -0.01 3.75 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.41 7.85 8.47 -92.71 -0.79 7.06 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.07 1.50 4.95 -2.39 -0.01 1.48 16 41 H 0.07 1.32 8.03 -2.38 -0.02 1.30 16 42 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.14 1.46 8.06 -2.92 -0.02 1.44 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 48 H 0.12 2.35 6.73 -2.91 -0.02 2.33 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 Total: -1.00 -71.23 406.43 1.80 -69.43 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.14 Total: 24.33 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.66 Total: 2.13 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -4.44 Total: -106.93 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.59 Total: -35.00 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.23 1.80 -69.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714478470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.097 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds