Wall clock time and date at job start Wed Apr 1 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47348 * 244.76380 * 3 2 1 5 5 H 1.48503 * 109.47186 * 4.76830 * 3 2 1 6 6 H 1.48499 * 109.46997 * 124.76401 * 3 2 1 7 7 C 1.38806 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00494 * 187.83739 * 7 2 1 9 9 N 1.36943 * 120.00056 * 7.83480 * 7 2 1 10 10 C 1.47422 * 125.64484 * 10.06011 * 9 7 2 11 11 C 1.54907 * 104.82941 * 155.89439 * 10 9 7 12 12 C 1.55152 * 101.58465 * 37.01071 * 11 10 9 13 13 C 1.47019 * 125.64934 * 190.08957 * 9 7 2 14 14 H 1.09007 * 110.00764 * 300.52561 * 13 9 7 15 15 C 1.53000 * 109.88469 * 61.61866 * 13 9 7 16 16 N 1.46497 * 109.47039 * 299.61923 * 15 13 9 17 17 C 1.34782 * 119.99885 * 277.63721 * 16 15 13 18 18 O 1.21283 * 119.99900 * 5.25753 * 17 16 15 19 19 C 1.50696 * 120.00028 * 185.25746 * 17 16 15 20 20 C 1.50701 * 109.82509 * 84.08734 * 19 17 16 21 21 C 1.38239 * 120.00164 * 80.66153 * 20 19 17 22 22 C 1.38229 * 120.00137 * 180.34528 * 21 20 19 23 23 C 1.38231 * 120.00376 * 359.89029 * 22 21 20 24 24 C 1.38239 * 119.99733 * 0.09019 * 23 22 21 25 25 C 1.38233 * 120.00081 * 359.97431 * 24 23 22 26 26 C 1.54384 * 109.83441 * 204.97428 * 19 17 16 27 27 C 1.55303 * 102.25106 * 98.24468 * 26 19 17 28 28 C 1.54946 * 100.94267 * 34.13812 * 27 26 19 29 29 O 1.43241 * 109.82984 * 323.20220 * 19 17 16 30 30 H 0.97006 * 120.00017 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.37004 * 37.05921 * 10 9 7 32 32 H 1.09000 * 110.46551 * 274.77863 * 10 9 7 33 33 H 1.09002 * 111.00618 * 278.93456 * 11 10 9 34 34 H 1.09000 * 111.00546 * 155.08469 * 11 10 9 35 35 H 1.08999 * 110.72479 * 206.13650 * 12 11 10 36 36 H 1.08998 * 110.72058 * 82.85985 * 12 11 10 37 37 H 1.09000 * 109.46969 * 179.61771 * 15 13 9 38 38 H 1.09002 * 109.46776 * 59.61706 * 15 13 9 39 39 H 0.96998 * 120.00426 * 97.63576 * 16 15 13 40 40 H 1.07997 * 119.99313 * 0.28610 * 21 20 19 41 41 H 1.07997 * 119.99838 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00494 * 180.10644 * 23 22 21 43 43 H 1.07998 * 119.99812 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00123 * 180.02562 * 25 24 23 45 45 H 1.08994 * 110.85008 * 216.44194 * 26 19 17 46 46 H 1.09002 * 110.84021 * 340.05631 * 26 19 17 47 47 H 1.09003 * 111.12200 * 152.05433 * 27 26 19 48 48 H 1.08999 * 111.12648 * 276.21513 * 27 26 19 49 49 H 1.09007 * 110.31101 * 82.46475 * 28 27 26 50 50 H 1.08997 * 110.31188 * 204.53640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0147 1.7480 -1.2664 5 1 1.2894 2.7441 0.1164 6 1 3.1890 1.6473 1.1502 7 6 2.0103 -1.2021 0.0005 8 1 3.0827 -1.2065 0.1281 9 7 1.3352 -2.3826 -0.1606 10 6 -0.0805 -2.5165 -0.5497 11 6 -0.1859 -3.9264 -1.1828 12 6 0.7844 -4.7428 -0.2889 13 6 1.9019 -3.7262 0.0264 14 1 2.7410 -3.8750 -0.6535 15 6 2.3683 -3.8976 1.4734 16 7 3.3980 -2.9004 1.7760 17 6 4.6784 -3.1245 1.4197 18 8 4.9630 -4.1053 0.7655 19 6 5.7563 -2.1564 1.8341 20 6 6.2241 -2.4792 3.2299 21 6 7.1338 -3.4996 3.4353 22 6 7.5574 -3.8004 4.7163 23 6 7.0732 -3.0794 5.7916 24 6 6.1638 -2.0587 5.5862 25 6 5.7391 -1.7587 4.3054 26 6 6.9436 -2.2421 0.8510 27 6 6.6733 -1.0424 -0.0974 28 6 6.0430 -0.0253 0.8870 29 8 5.2502 -0.8172 1.7888 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3473 -1.7521 -1.2794 32 1 -0.7249 -2.4450 0.3265 33 1 0.1528 -3.9158 -2.2188 34 1 -1.2027 -4.3124 -1.1098 35 1 1.1837 -5.5981 -0.8339 36 1 0.2871 -5.0651 0.6259 37 1 2.7808 -4.8977 1.6062 38 1 1.5217 -3.7614 2.1465 39 1 3.1584 -2.0789 2.2327 40 1 7.5127 -4.0624 2.5951 41 1 8.2684 -4.5973 4.8767 42 1 7.4055 -3.3132 6.7923 43 1 5.7851 -1.4956 6.4264 44 1 5.0290 -0.9611 4.1448 45 1 7.8910 -2.1166 1.3750 46 1 6.9247 -3.1831 0.3013 47 1 7.6021 -0.6575 -0.5186 48 1 5.9703 -1.3145 -0.8847 49 1 6.8227 0.5051 1.4338 50 1 5.4119 0.6814 0.3483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714617008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:48 Heat of formation + Delta-G solvation = -42.416918 kcal Electronic energy + Delta-G solvation = -32471.080519 eV Core-core repulsion = 28463.131793 eV Total energy + Delta-G solvation = -4007.948726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.99997 -40.03504 -39.31616 -38.80172 -35.48687 -34.48081 -33.52868 -32.97722 -31.69581 -31.12421 -30.56035 -29.13265 -26.78860 -25.79493 -24.50397 -23.77451 -22.82168 -22.34864 -21.80952 -21.18196 -20.62924 -19.18606 -18.71319 -18.25091 -17.16233 -16.96285 -16.66081 -16.51355 -16.33099 -16.03554 -15.64535 -15.62934 -15.28826 -14.87439 -14.74768 -14.32747 -14.10035 -13.91494 -13.86503 -13.63668 -13.60314 -13.54429 -12.99561 -12.93508 -12.83615 -12.68520 -12.55083 -12.33703 -12.25330 -12.06964 -11.99332 -11.89620 -11.79356 -11.63569 -11.50325 -11.43367 -11.34664 -10.58535 -10.45872 -9.86165 -9.82740 -9.65842 -8.75693 -7.77744 -5.09544 0.32785 0.49072 1.44636 1.47023 1.52856 1.61160 2.34321 2.54558 2.55332 2.88186 3.41364 3.43512 3.55305 3.71468 3.75835 3.97108 4.04557 4.07875 4.09964 4.16316 4.17718 4.26584 4.30148 4.35796 4.46815 4.58802 4.64587 4.65609 4.67205 4.70382 4.73562 4.79536 4.86905 4.93436 4.98005 5.02482 5.09311 5.10930 5.15443 5.20536 5.48333 5.54874 5.55322 5.60105 5.61014 5.65085 5.69328 5.82453 5.88936 6.08129 6.29890 6.66350 7.19312 7.26585 7.87966 8.54602 9.33874 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.004719 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.525948 B = 5932.154547 C = 6999.325717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.949 3.051 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.204 4.204 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.141 3.859 14 H 0.015 0.985 15 C 0.114 3.886 16 N -0.688 5.688 17 C 0.518 3.482 18 O -0.575 6.575 19 C 0.136 3.864 20 C -0.104 4.104 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.108 4.108 26 C -0.128 4.128 27 C -0.151 4.151 28 C 0.043 3.957 29 O -0.374 6.374 30 H 0.241 0.759 31 H 0.031 0.969 32 H 0.001 0.999 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.406 0.594 40 H 0.127 0.873 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.854 -6.605 8.703 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.779 3.221 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.334 4.334 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.033 3.967 14 H 0.033 0.967 15 C -0.012 4.012 16 N -0.335 5.335 17 C 0.304 3.696 18 O -0.457 6.457 19 C 0.093 3.907 20 C -0.105 4.105 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.126 4.126 26 C -0.166 4.166 27 C -0.188 4.188 28 C -0.033 4.033 29 O -0.293 6.293 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.241 0.759 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.138 0.862 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.812 -7.009 8.402 18.415 hybrid contribution -0.258 1.724 -0.285 1.766 sum 14.554 -5.286 8.117 17.482 Atomic orbital electron populations 1.70140 1.06048 1.24696 1.59044 1.25405 0.96156 1.00170 1.03720 0.85570 0.77810 0.80259 0.78481 1.21399 1.23051 1.18639 1.19237 0.91078 0.83174 1.39905 0.90314 1.44801 1.08308 1.00535 1.79671 1.21217 0.84937 0.93250 0.95505 1.22862 0.99732 0.96153 0.98478 1.22501 0.95533 0.96736 1.00334 1.21438 0.94952 0.86120 0.94186 0.96745 1.21973 0.90019 0.91403 0.97805 1.45770 1.06891 1.22602 1.58239 1.20724 0.84098 0.86271 0.78537 1.90597 1.82819 1.31694 1.40556 1.20908 0.92412 0.82803 0.94613 1.19734 0.99223 0.98705 0.92840 1.21148 0.96908 0.96471 0.98683 1.21423 1.00504 1.00384 0.91696 1.21555 0.96452 0.95060 1.00193 1.21432 0.98017 0.98464 0.96531 1.21104 0.99454 0.99340 0.92669 1.23149 0.96726 1.00732 0.95964 1.23274 1.02806 0.94919 0.97836 1.23645 0.94964 0.94058 0.90642 1.88505 1.55604 1.19636 1.65571 0.94924 0.95083 0.98092 0.92463 0.89566 0.89767 0.90019 0.90843 0.90618 0.75873 0.85532 0.83301 0.83120 0.84084 0.86432 0.87347 0.89087 0.86211 0.92412 0.89293 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.73 10.62 21.65 0.23 -56.50 16 2 C -0.06 -3.48 5.42 84.86 0.46 -3.02 16 3 Si 0.95 45.63 29.56 68.60 2.03 47.66 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.20 -11.11 8.68 84.03 0.73 -10.38 16 8 H 0.08 4.24 6.71 -2.91 -0.02 4.22 16 9 N -0.61 -30.72 3.13 -668.26 -2.09 -32.81 16 10 C 0.18 8.65 5.43 86.85 0.47 9.12 16 11 C -0.13 -4.97 7.08 31.98 0.23 -4.74 16 12 C -0.11 -3.84 6.48 31.78 0.21 -3.64 16 13 C 0.14 5.96 3.39 45.34 0.15 6.11 16 14 H 0.01 0.70 7.84 -2.38 -0.02 0.68 16 15 C 0.11 4.38 5.45 86.38 0.47 4.85 16 16 N -0.69 -27.23 3.36 -463.06 -1.55 -28.78 16 17 C 0.52 19.86 6.49 87.65 0.57 20.43 16 18 O -0.58 -24.26 15.00 -3.04 -0.05 -24.31 16 19 C 0.14 4.32 0.99 -11.82 -0.01 4.31 16 20 C -0.10 -2.94 4.70 -19.86 -0.09 -3.03 16 21 C -0.11 -2.75 8.84 22.27 0.20 -2.55 16 22 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 23 C -0.11 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 25 C -0.11 -2.90 9.37 22.27 0.21 -2.69 16 26 C -0.13 -3.44 5.06 31.86 0.16 -3.28 16 27 C -0.15 -3.98 7.16 32.05 0.23 -3.75 16 28 C 0.04 1.24 7.78 72.65 0.57 1.81 16 29 O -0.37 -12.94 8.80 -148.98 -1.31 -14.25 16 30 H 0.24 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.03 1.73 6.88 -2.39 -0.02 1.72 16 32 H 0.00 0.06 8.08 -2.39 -0.02 0.04 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.49 7.84 -2.39 -0.02 2.47 16 37 H 0.07 2.63 7.74 -2.39 -0.02 2.61 16 38 H 0.08 2.83 8.13 -2.39 -0.02 2.81 16 39 H 0.41 16.82 7.71 -92.71 -0.71 16.11 16 40 H 0.13 2.93 7.39 -2.91 -0.02 2.91 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.12 3.44 7.29 -2.91 -0.02 3.41 16 45 H 0.11 2.32 7.38 -2.39 -0.02 2.30 16 46 H 0.09 2.69 6.75 -2.39 -0.02 2.67 16 47 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -69.61 393.46 2.69 -66.92 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.22 Total: 38.94 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.21 Total: 3.13 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -3.41 Total: -118.09 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.36 Total: -38.56 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.61 2.69 -66.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714617008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.503 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds