Wall clock time and date at job start Wed Apr 1 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48508 * 109.46975 * 269.99677 * 3 2 1 5 5 H 1.48496 * 109.47193 * 29.99398 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99657 * 3 2 1 7 7 C 1.38813 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99787 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99705 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47277 * 185.08177 * 11 10 9 13 13 H 1.08996 * 109.58791 * 61.39843 * 12 11 10 14 14 C 1.53203 * 109.58525 * 300.96997 * 12 11 10 15 15 C 1.53037 * 109.31207 * 185.57881 * 14 12 11 16 16 C 1.53036 * 109.53756 * 61.36822 * 15 14 12 17 17 C 1.53629 * 109.24368 * 298.50592 * 16 15 14 18 18 N 1.46921 * 109.58864 * 181.68567 * 12 11 10 19 19 C 1.34781 * 120.63203 * 353.36645 * 18 12 11 20 20 O 1.21281 * 119.99596 * 355.18571 * 19 18 12 21 21 C 1.50694 * 120.00238 * 175.18444 * 19 18 12 22 22 H 1.09002 * 110.83203 * 303.69950 * 21 19 18 23 23 C 1.54706 * 110.96653 * 67.43239 * 21 19 18 24 24 O 1.43777 * 102.77923 * 92.94666 * 23 21 19 25 25 C 1.36131 * 109.20716 * 27.89075 * 24 23 21 26 26 C 1.39285 * 129.90502 * 161.19593 * 25 24 23 27 27 C 1.37925 * 120.24070 * 179.33184 * 26 25 24 28 28 C 1.38291 * 120.34948 * 359.44884 * 27 26 25 29 29 C 1.38346 * 119.76601 * 0.73694 * 28 27 26 30 30 C 1.37738 * 119.97887 * 359.72566 * 29 28 27 31 31 H 0.96999 * 120.00008 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99853 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47187 * 60.00180 * 10 9 7 34 34 H 1.08998 * 109.47230 * 300.00252 * 10 9 7 35 35 H 1.08997 * 109.47052 * 65.07630 * 11 10 9 36 36 H 1.08999 * 109.46914 * 305.08084 * 11 10 9 37 37 H 1.09003 * 109.49436 * 305.53267 * 14 12 11 38 38 H 1.08999 * 109.49277 * 65.62882 * 14 12 11 39 39 H 1.09003 * 109.45638 * 181.38414 * 15 14 12 40 40 H 1.09000 * 109.46200 * 301.35804 * 15 14 12 41 41 H 1.08995 * 109.50275 * 58.58218 * 16 15 14 42 42 H 1.09003 * 109.49955 * 178.64842 * 16 15 14 43 43 H 1.08998 * 109.74092 * 295.12356 * 17 16 15 44 44 H 1.09000 * 109.66717 * 174.54979 * 17 16 15 45 45 H 1.08998 * 110.74857 * 211.27090 * 23 21 19 46 46 H 1.09000 * 110.75099 * 334.43532 * 23 21 19 47 47 H 1.08007 * 119.87485 * 359.05813 * 26 25 24 48 48 H 1.08001 * 119.82757 * 179.72609 * 27 26 25 49 49 H 1.08000 * 120.11413 * 180.48098 * 28 27 26 50 50 H 1.08004 * 120.00614 * 179.70775 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 6 1.8243 -6.1410 0.1297 13 1 2.3694 -6.1583 1.0734 14 6 2.8068 -6.2840 -1.0370 15 6 3.4626 -7.6656 -0.9800 16 6 2.3892 -8.7477 -1.1172 17 6 1.4019 -8.6329 0.0543 18 7 0.8752 -7.2617 0.0886 19 6 -0.4537 -7.0365 0.0881 20 8 -0.8772 -5.9066 0.2098 21 6 -1.4131 -8.1886 -0.0637 22 1 -1.2074 -8.7466 -0.9772 23 6 -1.3646 -9.1162 1.1735 24 8 -2.4120 -8.5905 2.0064 25 6 -3.3571 -8.0045 1.2211 26 6 -4.6809 -7.6799 1.5076 27 6 -5.4683 -7.0691 0.5541 28 6 -4.9482 -6.7632 -0.6902 29 6 -3.6353 -7.0858 -0.9841 30 6 -2.8500 -7.7044 -0.0366 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6840 -3.7141 0.8922 34 1 2.6854 -3.7149 -0.8878 35 1 0.4997 -4.8147 -0.9318 36 1 0.3779 -4.7119 0.8409 37 1 2.2706 -6.1744 -1.9797 38 1 3.5743 -5.5136 -0.9627 39 1 4.1803 -7.7607 -1.7949 40 1 3.9777 -7.7840 -0.0267 41 1 1.8569 -8.6149 -2.0590 42 1 2.8595 -9.7309 -1.1006 43 1 1.9151 -8.8507 0.9909 44 1 0.5813 -9.3362 -0.0873 45 1 -1.5763 -10.1475 0.8915 46 1 -0.3980 -9.0445 1.6722 47 1 -5.0936 -7.9113 2.4785 48 1 -6.4953 -6.8243 0.7819 49 1 -5.5659 -6.2779 -1.4314 50 1 -3.2265 -6.8530 -1.9563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715250482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:15 Heat of formation + Delta-G solvation = -9.390763 kcal Electronic energy + Delta-G solvation = -31052.941740 eV Core-core repulsion = 27046.425135 eV Total energy + Delta-G solvation = -4006.516605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77347 -40.09415 -37.51585 -37.36058 -35.25289 -33.61079 -32.80369 -32.31307 -30.59996 -30.15614 -29.38548 -27.85613 -25.48454 -24.14596 -23.99032 -22.94310 -22.41045 -21.81712 -20.85332 -20.55586 -19.21925 -17.70065 -17.12849 -16.87155 -16.65027 -16.21954 -15.71807 -15.64605 -15.09080 -14.66515 -14.60279 -14.34935 -14.15914 -13.77047 -13.61962 -13.56293 -13.32561 -13.16418 -13.00327 -12.97762 -12.74876 -12.64547 -12.11446 -11.92157 -11.82997 -11.47367 -11.41022 -11.10507 -11.04017 -10.91604 -10.90524 -10.79909 -10.75472 -10.42477 -10.36287 -9.93374 -9.57340 -9.06212 -8.80065 -8.72429 -8.54633 -8.24571 -6.76876 -5.63046 -2.91344 1.16827 1.31742 2.53773 2.84023 3.08005 3.50612 3.54692 3.57351 3.63036 3.97664 4.26223 4.32427 4.48593 4.63632 4.64529 4.69795 4.74913 4.89638 4.93830 4.97134 5.02492 5.08514 5.14372 5.16811 5.30697 5.32891 5.39047 5.50591 5.53536 5.57027 5.67531 5.73259 5.75820 5.89065 5.93145 5.96926 6.12156 6.20719 6.23553 6.30150 6.38671 6.40551 6.41783 6.46697 6.58780 6.68508 7.03599 7.09105 7.19927 7.40105 7.79894 8.24785 8.55806 9.66190 10.28440 10.63261 11.59921 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.003407 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.083545 B = 8215.611770 C =10683.956117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.149 3.851 11 C -0.116 4.116 12 C 0.154 3.846 13 H 0.072 0.928 14 C -0.133 4.133 15 C -0.120 4.120 16 C -0.134 4.134 17 C 0.102 3.898 18 N -0.611 5.611 19 C 0.518 3.482 20 O -0.494 6.494 21 C -0.103 4.103 22 H 0.118 0.882 23 C 0.061 3.939 24 O -0.300 6.300 25 C 0.110 3.890 26 C -0.140 4.140 27 C -0.082 4.082 28 C -0.147 4.147 29 C -0.051 4.051 30 C -0.148 4.148 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -27.806 -1.607 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.021 3.979 11 C -0.154 4.154 12 C 0.051 3.949 13 H 0.090 0.910 14 C -0.171 4.171 15 C -0.158 4.158 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.346 5.346 19 C 0.304 3.696 20 O -0.367 6.367 21 C -0.124 4.124 22 H 0.136 0.864 23 C -0.015 4.015 24 O -0.213 6.213 25 C 0.065 3.935 26 C -0.159 4.159 27 C -0.100 4.100 28 C -0.165 4.165 29 C -0.069 4.069 30 C -0.149 4.149 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.255 -27.083 -1.282 27.308 hybrid contribution 0.459 0.869 -0.249 1.014 sum -2.796 -26.214 -1.531 26.407 Atomic orbital electron populations 1.69686 1.05078 1.25427 1.57899 1.24745 0.95491 0.97589 1.03351 0.86205 0.78615 0.84059 0.77430 1.21822 1.21805 1.20831 1.19244 0.90927 0.84324 1.42360 0.91346 1.42362 1.06061 0.99884 1.89207 1.20782 0.93645 0.86409 0.97060 1.22242 0.97653 0.90844 1.04678 1.21330 0.89403 0.86075 0.98069 0.91047 1.22062 0.98970 0.97091 0.98966 1.21537 0.97429 0.94674 1.02157 1.21995 0.97278 0.99452 0.98548 1.21934 0.97752 0.83185 0.99223 1.48157 1.05197 1.07082 1.74147 1.20112 0.82223 0.89881 0.77347 1.90893 1.77177 1.22246 1.46349 1.21626 0.92865 0.96608 1.01321 0.86403 1.23920 0.91693 0.96761 0.89096 1.86854 1.31089 1.71450 1.31945 1.19522 0.90156 0.94506 0.89325 1.20216 0.90020 1.04546 1.01080 1.20882 0.99561 0.96689 0.92856 1.21040 0.95477 1.02414 0.97556 1.20290 0.93137 0.94892 0.98555 1.20113 0.93333 1.05447 0.96026 0.93614 0.78080 0.97029 0.96773 0.91561 0.88953 0.91443 0.89885 0.91670 0.91767 0.91404 0.90856 0.90997 0.90149 0.89441 0.87296 0.85488 0.85118 0.85327 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.10 13.06 55.49 0.72 -29.37 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.47 29.55 -169.99 -5.02 18.45 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -7.12 9.99 -15.06 -0.15 -7.27 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -20.53 5.60 -59.90 -0.34 -20.87 16 10 C 0.15 3.30 5.73 -4.04 -0.02 3.28 16 11 C -0.12 -2.24 3.29 -26.73 -0.09 -2.32 16 12 C 0.15 2.16 3.03 -67.60 -0.20 1.96 16 13 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.13 -1.59 4.82 -26.61 -0.13 -1.72 16 15 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 16 C -0.13 -0.93 6.10 -26.39 -0.16 -1.09 16 17 C 0.10 0.76 5.14 -3.48 -0.02 0.74 16 18 N -0.61 -7.29 2.97 -164.96 -0.49 -7.78 16 19 C 0.52 7.40 6.89 -10.99 -0.08 7.32 16 20 O -0.49 -9.57 11.67 5.56 0.06 -9.50 16 21 C -0.10 -1.11 2.52 -91.56 -0.23 -1.34 16 22 H 0.12 0.92 7.76 -51.93 -0.40 0.52 16 23 C 0.06 0.54 6.30 38.06 0.24 0.78 16 24 O -0.30 -3.87 11.11 -20.16 -0.22 -4.10 16 25 C 0.11 1.47 7.03 -38.95 -0.27 1.20 16 26 C -0.14 -1.67 10.06 -39.31 -0.40 -2.06 16 27 C -0.08 -0.88 10.02 -39.68 -0.40 -1.27 16 28 C -0.15 -1.65 10.07 -39.52 -0.40 -2.05 16 29 C -0.05 -0.63 10.03 -39.72 -0.40 -1.03 16 30 C -0.15 -1.93 4.93 -104.10 -0.51 -2.44 16 31 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.39 11.63 7.67 -40.82 -0.31 11.32 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.01 0.31 6.84 -51.93 -0.36 -0.04 16 35 H 0.07 1.39 7.23 -51.93 -0.38 1.01 16 36 H 0.09 2.05 6.24 -51.93 -0.32 1.72 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.06 6.87 -51.93 -0.36 0.70 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.42 5.00 -51.93 -0.26 0.16 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.11 0.84 6.47 -51.93 -0.34 0.50 16 47 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 48 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 49 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 50 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -37.31 388.34 -10.66 -47.97 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.77 Total: 8.44 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.47 Total: -9.09 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.10 Total: -58.02 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.16 Total: -13.60 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.31 -10.66 -47.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715250482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.580 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds