Wall clock time and date at job start Wed Apr 1 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48508 * 109.46975 * 269.99677 * 3 2 1 5 5 H 1.48496 * 109.47193 * 29.99398 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99657 * 3 2 1 7 7 C 1.38813 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99787 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99705 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47277 * 185.08177 * 11 10 9 13 13 H 1.08996 * 109.58791 * 61.39843 * 12 11 10 14 14 C 1.53203 * 109.58525 * 300.96997 * 12 11 10 15 15 C 1.53037 * 109.31207 * 185.57881 * 14 12 11 16 16 C 1.53036 * 109.53756 * 61.36822 * 15 14 12 17 17 C 1.53629 * 109.24368 * 298.50592 * 16 15 14 18 18 N 1.46921 * 109.58864 * 181.68567 * 12 11 10 19 19 C 1.34781 * 120.63203 * 353.36645 * 18 12 11 20 20 O 1.21281 * 119.99596 * 355.18571 * 19 18 12 21 21 C 1.50694 * 120.00238 * 175.18444 * 19 18 12 22 22 H 1.09002 * 110.83203 * 303.69950 * 21 19 18 23 23 C 1.54706 * 110.96653 * 67.43239 * 21 19 18 24 24 O 1.43777 * 102.77923 * 92.94666 * 23 21 19 25 25 C 1.36131 * 109.20716 * 27.89075 * 24 23 21 26 26 C 1.39285 * 129.90502 * 161.19593 * 25 24 23 27 27 C 1.37925 * 120.24070 * 179.33184 * 26 25 24 28 28 C 1.38291 * 120.34948 * 359.44884 * 27 26 25 29 29 C 1.38346 * 119.76601 * 0.73694 * 28 27 26 30 30 C 1.37738 * 119.97887 * 359.72566 * 29 28 27 31 31 H 0.96999 * 120.00008 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99853 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47187 * 60.00180 * 10 9 7 34 34 H 1.08998 * 109.47230 * 300.00252 * 10 9 7 35 35 H 1.08997 * 109.47052 * 65.07630 * 11 10 9 36 36 H 1.08999 * 109.46914 * 305.08084 * 11 10 9 37 37 H 1.09003 * 109.49436 * 305.53267 * 14 12 11 38 38 H 1.08999 * 109.49277 * 65.62882 * 14 12 11 39 39 H 1.09003 * 109.45638 * 181.38414 * 15 14 12 40 40 H 1.09000 * 109.46200 * 301.35804 * 15 14 12 41 41 H 1.08995 * 109.50275 * 58.58218 * 16 15 14 42 42 H 1.09003 * 109.49955 * 178.64842 * 16 15 14 43 43 H 1.08998 * 109.74092 * 295.12356 * 17 16 15 44 44 H 1.09000 * 109.66717 * 174.54979 * 17 16 15 45 45 H 1.08998 * 110.74857 * 211.27090 * 23 21 19 46 46 H 1.09000 * 110.75099 * 334.43532 * 23 21 19 47 47 H 1.08007 * 119.87485 * 359.05813 * 26 25 24 48 48 H 1.08001 * 119.82757 * 179.72609 * 27 26 25 49 49 H 1.08000 * 120.11413 * 180.48098 * 28 27 26 50 50 H 1.08004 * 120.00614 * 179.70775 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 6 1.8243 -6.1410 0.1297 13 1 2.3694 -6.1583 1.0734 14 6 2.8068 -6.2840 -1.0370 15 6 3.4626 -7.6656 -0.9800 16 6 2.3892 -8.7477 -1.1172 17 6 1.4019 -8.6329 0.0543 18 7 0.8752 -7.2617 0.0886 19 6 -0.4537 -7.0365 0.0881 20 8 -0.8772 -5.9066 0.2098 21 6 -1.4131 -8.1886 -0.0637 22 1 -1.2074 -8.7466 -0.9772 23 6 -1.3646 -9.1162 1.1735 24 8 -2.4120 -8.5905 2.0064 25 6 -3.3571 -8.0045 1.2211 26 6 -4.6809 -7.6799 1.5076 27 6 -5.4683 -7.0691 0.5541 28 6 -4.9482 -6.7632 -0.6902 29 6 -3.6353 -7.0858 -0.9841 30 6 -2.8500 -7.7044 -0.0366 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6840 -3.7141 0.8922 34 1 2.6854 -3.7149 -0.8878 35 1 0.4997 -4.8147 -0.9318 36 1 0.3779 -4.7119 0.8409 37 1 2.2706 -6.1744 -1.9797 38 1 3.5743 -5.5136 -0.9627 39 1 4.1803 -7.7607 -1.7949 40 1 3.9777 -7.7840 -0.0267 41 1 1.8569 -8.6149 -2.0590 42 1 2.8595 -9.7309 -1.1006 43 1 1.9151 -8.8507 0.9909 44 1 0.5813 -9.3362 -0.0873 45 1 -1.5763 -10.1475 0.8915 46 1 -0.3980 -9.0445 1.6722 47 1 -5.0936 -7.9113 2.4785 48 1 -6.4953 -6.8243 0.7819 49 1 -5.5659 -6.2779 -1.4314 50 1 -3.2265 -6.8530 -1.9563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715250482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:14 Heat of formation + Delta-G solvation = -34.086075 kcal Electronic energy + Delta-G solvation = -31054.012609 eV Core-core repulsion = 27046.425135 eV Total energy + Delta-G solvation = -4007.587474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.67637 -41.09778 -38.41223 -38.36853 -37.02667 -34.97872 -33.98499 -33.41313 -32.34365 -31.04125 -30.23176 -29.31269 -26.75037 -25.54876 -24.88235 -24.28035 -23.40931 -22.96833 -22.08101 -21.60838 -20.17679 -19.25369 -18.48375 -17.92648 -17.57082 -17.25684 -16.87593 -16.53346 -16.45512 -16.13906 -15.63301 -15.45068 -15.26614 -15.06353 -14.95533 -14.68721 -14.59489 -14.42535 -14.10996 -14.01788 -13.83673 -13.56700 -13.34813 -12.96977 -12.81648 -12.80718 -12.69645 -12.64530 -12.34095 -12.16844 -12.03316 -11.92631 -11.90238 -11.77277 -11.76439 -11.54651 -11.39102 -10.96049 -10.16681 -9.84615 -9.58084 -9.15219 -9.04757 -7.97175 -5.28660 0.27555 0.40335 1.42859 1.47172 1.51611 1.55741 1.89117 2.26886 2.53424 2.74025 3.13177 3.35065 3.44679 3.49865 3.76780 3.81343 3.88725 3.93264 4.07169 4.12305 4.14270 4.19637 4.23146 4.34161 4.38544 4.41922 4.47033 4.48763 4.55069 4.58703 4.65598 4.70067 4.72089 4.77904 4.90458 4.96988 5.02411 5.11958 5.16677 5.24276 5.32550 5.35661 5.38479 5.41531 5.47065 5.49711 5.53251 5.62565 5.68113 6.17016 6.23479 6.41517 7.19586 7.27848 8.04304 8.29041 9.27190 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.003407 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.083545 B = 8215.611770 C =10683.956117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.149 3.851 11 C -0.092 4.092 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.130 4.130 17 C 0.093 3.907 18 N -0.605 5.605 19 C 0.509 3.491 20 O -0.560 6.560 21 C -0.095 4.095 22 H 0.152 0.848 23 C 0.060 3.940 24 O -0.322 6.322 25 C 0.088 3.912 26 C -0.155 4.155 27 C -0.083 4.083 28 C -0.156 4.156 29 C -0.072 4.072 30 C -0.168 4.168 31 H 0.252 0.748 32 H 0.368 0.632 33 H 0.018 0.982 34 H 0.025 0.975 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.141 0.859 48 H 0.160 0.840 49 H 0.148 0.852 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -30.444 -1.762 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.392 5.392 10 C 0.023 3.977 11 C -0.130 4.130 12 C 0.055 3.945 13 H 0.097 0.903 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.028 4.028 18 N -0.338 5.338 19 C 0.297 3.703 20 O -0.438 6.438 21 C -0.116 4.116 22 H 0.169 0.831 23 C -0.014 4.014 24 O -0.236 6.236 25 C 0.044 3.956 26 C -0.173 4.173 27 C -0.101 4.101 28 C -0.174 4.174 29 C -0.090 4.090 30 C -0.169 4.169 31 H 0.060 0.940 32 H 0.199 0.801 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.127 0.873 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.159 0.841 48 H 0.177 0.823 49 H 0.165 0.835 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.437 -29.808 -1.445 29.877 hybrid contribution -0.081 1.645 -0.199 1.659 sum -1.518 -28.163 -1.644 28.251 Atomic orbital electron populations 1.69886 1.07037 1.26179 1.59410 1.25738 0.96452 1.01617 1.03441 0.85013 0.77648 0.78674 0.77646 1.20996 1.22009 1.18988 1.19724 0.91597 0.85303 1.41591 0.90273 1.42659 1.05527 1.01601 1.89391 1.20963 0.94042 0.85347 0.97376 1.21892 0.96322 0.93021 1.01808 1.21128 0.89502 0.84412 0.99477 0.90333 1.21994 0.98004 0.99672 0.96974 1.21533 0.97989 0.92521 1.03294 1.22002 0.96515 1.00412 0.97830 1.22382 0.99133 0.80627 1.00673 1.48244 1.04250 1.08514 1.72828 1.20841 0.83231 0.90070 0.76143 1.90875 1.78344 1.25044 1.49513 1.21672 0.90534 0.95575 1.03817 0.83054 1.24280 0.91459 0.97982 0.87713 1.86802 1.31824 1.71782 1.33229 1.19830 0.90875 0.95296 0.89645 1.20587 0.90066 1.04600 1.02070 1.21256 1.00811 0.95728 0.92291 1.21384 0.95405 1.02203 0.98427 1.20546 0.94012 0.95518 0.98967 1.20428 0.94595 1.05757 0.96114 0.93967 0.80067 0.96440 0.95701 0.94179 0.92399 0.92964 0.90953 0.90490 0.90652 0.91973 0.87444 0.88999 0.87305 0.85342 0.85985 0.84103 0.82264 0.83461 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.05 13.06 21.65 0.28 -64.77 16 2 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 3 Si 0.98 48.88 29.55 68.60 2.03 50.91 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.25 -15.35 9.99 84.03 0.84 -14.52 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 9 N -0.75 -44.00 5.60 -343.43 -1.92 -45.93 16 10 C 0.15 6.88 5.73 86.38 0.50 7.37 16 11 C -0.09 -3.77 3.29 30.59 0.10 -3.67 16 12 C 0.16 4.46 3.03 44.98 0.14 4.60 16 13 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.13 -2.97 4.82 30.67 0.15 -2.83 16 15 C -0.12 -1.62 5.88 30.62 0.18 -1.44 16 16 C -0.13 -1.26 6.10 30.82 0.19 -1.07 16 17 C 0.09 1.03 5.14 86.51 0.45 1.47 16 18 N -0.60 -13.82 2.97 -794.19 -2.36 -16.18 16 19 C 0.51 14.72 6.89 87.65 0.60 15.32 16 20 O -0.56 -23.30 11.67 -3.03 -0.04 -23.34 16 21 C -0.09 -1.93 2.52 -11.40 -0.03 -1.96 16 22 H 0.15 1.95 7.76 -2.39 -0.02 1.94 16 23 C 0.06 0.92 6.30 72.56 0.46 1.38 16 24 O -0.32 -8.13 11.11 -95.04 -1.06 -9.18 16 25 C 0.09 2.39 7.03 22.68 0.16 2.55 16 26 C -0.15 -3.71 10.06 22.45 0.23 -3.48 16 27 C -0.08 -1.76 10.02 22.21 0.22 -1.54 16 28 C -0.16 -3.57 10.07 22.31 0.22 -3.34 16 29 C -0.07 -1.88 10.03 22.18 0.22 -1.66 16 30 C -0.17 -4.42 4.93 -19.52 -0.10 -4.52 16 31 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 32 H 0.37 23.69 7.67 -92.71 -0.71 22.98 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.03 1.10 6.84 -2.39 -0.02 1.09 16 35 H 0.04 1.81 7.23 -2.39 -0.02 1.80 16 36 H 0.06 2.78 6.24 -2.39 -0.01 2.77 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.81 6.87 -2.39 -0.02 1.79 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.62 5.00 -2.39 -0.01 0.61 16 45 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.12 1.50 6.47 -2.39 -0.02 1.48 16 47 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 48 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 50 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -87.20 388.34 2.17 -85.03 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.24 Total: 35.34 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.99 Total: -11.89 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -4.00 Total: -126.87 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.09 Total: -32.52 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -87.20 2.17 -85.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715250482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.948 kcal (2) G-P(sol) polarization free energy of solvation -87.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds