Wall clock time and date at job start Wed Apr 1 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47376 * 270.00002 * 3 2 1 5 5 H 1.48498 * 109.47238 * 30.00132 * 3 2 1 6 6 H 1.48507 * 109.47172 * 150.00129 * 3 2 1 7 7 C 1.38813 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00019 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47707 * 184.91803 * 11 10 9 13 13 H 1.09004 * 109.58413 * 299.13322 * 12 11 10 14 14 C 1.53193 * 109.58264 * 59.41008 * 12 11 10 15 15 C 1.53050 * 109.31301 * 174.56693 * 14 12 11 16 16 C 1.53044 * 109.53651 * 298.64212 * 15 14 12 17 17 C 1.53184 * 109.34314 * 61.34467 * 16 15 14 18 18 N 1.46922 * 109.70993 * 178.77262 * 12 11 10 19 19 C 1.34774 * 120.62658 * 6.53923 * 18 12 11 20 20 O 1.21283 * 120.00190 * 5.80551 * 19 18 12 21 21 C 1.50701 * 120.00049 * 185.81333 * 19 18 12 22 22 H 1.09004 * 110.83106 * 297.72877 * 21 19 18 23 23 C 1.54707 * 110.94674 * 61.44830 * 21 19 18 24 24 O 1.43759 * 102.79621 * 92.79633 * 23 21 19 25 25 C 1.36124 * 109.28817 * 27.55085 * 24 23 21 26 26 C 1.39295 * 129.87796 * 161.45032 * 25 24 23 27 27 C 1.37932 * 120.23881 * 179.59995 * 26 25 24 28 28 C 1.38282 * 120.35631 * 359.97188 * 27 26 25 29 29 C 1.38346 * 119.76444 * 0.19648 * 28 27 26 30 30 C 1.37742 * 119.98105 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99459 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00437 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47364 * 59.99372 * 10 9 7 34 34 H 1.09005 * 109.47254 * 300.00055 * 10 9 7 35 35 H 1.09005 * 109.46973 * 64.92030 * 11 10 9 36 36 H 1.08995 * 109.47211 * 304.92071 * 11 10 9 37 37 H 1.09001 * 109.49950 * 54.62079 * 14 12 11 38 38 H 1.08998 * 109.53126 * 294.53495 * 14 12 11 39 39 H 1.08994 * 109.45830 * 178.61869 * 15 14 12 40 40 H 1.09004 * 109.44286 * 58.65068 * 15 14 12 41 41 H 1.08993 * 109.49771 * 181.31523 * 16 15 14 42 42 H 1.09006 * 109.49260 * 301.37564 * 16 15 14 43 43 H 1.09002 * 109.59167 * 65.16601 * 17 16 15 44 44 H 1.08993 * 109.59143 * 185.59370 * 17 16 15 45 45 H 1.08996 * 110.74710 * 211.12628 * 23 21 19 46 46 H 1.09000 * 110.74554 * 334.28700 * 23 21 19 47 47 H 1.07999 * 119.87477 * 359.57680 * 26 25 24 48 48 H 1.08004 * 119.81594 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.11617 * 180.17958 * 28 27 26 50 50 H 1.08002 * 120.01099 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8246 -6.1413 0.1248 13 1 2.4970 -6.2567 -0.7253 14 6 2.6349 -6.1475 1.4249 15 6 3.2847 -7.5209 1.6098 16 6 2.1966 -8.5921 1.7134 17 6 1.3807 -8.6137 0.4171 18 7 0.8727 -7.2601 0.1555 19 6 -0.4420 -7.0488 -0.0521 20 8 -0.8364 -5.9469 -0.3704 21 6 -1.4223 -8.1817 0.1114 22 1 -1.2156 -8.9792 -0.6023 23 6 -1.4083 -8.7202 1.5617 24 8 -2.4532 -7.9612 2.1932 25 6 -3.3734 -7.5983 1.2581 26 6 -4.6907 -7.1748 1.4187 27 6 -5.4532 -6.8445 0.3178 28 6 -4.9178 -6.9298 -0.9543 29 6 -3.6114 -7.3529 -1.1226 30 6 -2.8495 -7.6877 -0.0250 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6846 -3.7146 -0.8895 35 1 0.4961 -4.8130 -0.9294 36 1 0.3808 -4.7134 0.8440 37 1 1.9738 -5.9417 2.2667 38 1 3.4095 -5.3823 1.3752 39 1 3.8818 -7.5202 2.5216 40 1 3.9264 -7.7366 0.7555 41 1 2.6592 -9.5667 1.8684 42 1 1.5399 -8.3635 2.5529 43 1 2.0164 -8.9310 -0.4096 44 1 0.5442 -9.3043 0.5233 45 1 -1.6393 -9.7852 1.5803 46 1 -0.4461 -8.5269 2.0360 47 1 -5.1165 -7.1053 2.4088 48 1 -6.4740 -6.5173 0.4502 49 1 -5.5174 -6.6674 -1.8133 50 1 -3.1891 -7.4206 -2.1143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715250483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:18 Heat of formation + Delta-G solvation = -8.202788 kcal Electronic energy + Delta-G solvation = -31221.074463 eV Core-core repulsion = 27214.609373 eV Total energy + Delta-G solvation = -4006.465090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78492 -40.08276 -37.50497 -37.38338 -35.26887 -33.59603 -32.80992 -32.30563 -30.61026 -30.15157 -29.35405 -27.88798 -25.43456 -24.21656 -23.90937 -22.92595 -22.37962 -21.83748 -20.96974 -20.56257 -19.02991 -17.71863 -17.13022 -16.89409 -16.81063 -16.15521 -15.74976 -15.59409 -15.02914 -14.61491 -14.55202 -14.37371 -14.15625 -13.82196 -13.74972 -13.52204 -13.31317 -13.13043 -13.00602 -12.96353 -12.69402 -12.63464 -12.14298 -11.86134 -11.82721 -11.44629 -11.38762 -11.12013 -11.03461 -10.91684 -10.87665 -10.79951 -10.73334 -10.43128 -10.33939 -9.93653 -9.56945 -9.05878 -8.81674 -8.70516 -8.54385 -8.22941 -6.76084 -5.62590 -2.90855 1.17594 1.32829 2.53563 2.84868 3.09175 3.51001 3.54974 3.57569 3.63827 3.97707 4.27343 4.32951 4.49798 4.61074 4.66216 4.69823 4.74468 4.89080 4.96295 4.99120 5.03985 5.07772 5.14728 5.17924 5.31291 5.33293 5.39674 5.51618 5.53513 5.59007 5.67746 5.74035 5.76259 5.89939 5.94670 5.97341 6.12852 6.21585 6.26657 6.30923 6.39087 6.41050 6.43323 6.48097 6.60204 6.68703 7.05048 7.10310 7.20485 7.40110 7.80274 8.24410 8.56246 9.66594 10.28902 10.63686 11.60382 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009177 B = 0.003500 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.264142 B = 7997.347690 C =10348.953660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.148 3.852 11 C -0.118 4.118 12 C 0.154 3.846 13 H 0.071 0.929 14 C -0.135 4.135 15 C -0.119 4.119 16 C -0.138 4.138 17 C 0.102 3.898 18 N -0.611 5.611 19 C 0.519 3.481 20 O -0.495 6.495 21 C -0.102 4.102 22 H 0.119 0.881 23 C 0.058 3.942 24 O -0.299 6.299 25 C 0.111 3.889 26 C -0.140 4.140 27 C -0.081 4.081 28 C -0.148 4.148 29 C -0.050 4.050 30 C -0.150 4.150 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -27.731 1.633 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.020 3.980 11 C -0.156 4.156 12 C 0.052 3.948 13 H 0.089 0.911 14 C -0.173 4.173 15 C -0.157 4.157 16 C -0.176 4.176 17 C -0.021 4.021 18 N -0.346 5.346 19 C 0.305 3.695 20 O -0.368 6.368 21 C -0.124 4.124 22 H 0.136 0.864 23 C -0.017 4.017 24 O -0.213 6.213 25 C 0.066 3.934 26 C -0.159 4.159 27 C -0.099 4.099 28 C -0.166 4.166 29 C -0.068 4.068 30 C -0.151 4.151 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.146 0.854 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.380 -26.955 1.706 27.220 hybrid contribution 0.440 0.824 -0.104 0.940 sum -2.940 -26.131 1.602 26.344 Atomic orbital electron populations 1.69692 1.05079 1.25418 1.57907 1.24747 0.95491 0.97590 1.03361 0.86204 0.78594 0.84057 0.77447 1.21810 1.21818 1.20839 1.19243 0.90926 0.84323 1.42347 0.91341 1.42353 1.06048 0.99879 1.89204 1.20807 0.93665 0.86388 0.97129 1.22249 0.97494 0.90816 1.04997 1.21297 0.89983 0.86239 0.97291 0.91070 1.22091 1.00085 0.97153 0.97956 1.21529 0.97323 0.94735 1.02101 1.21977 0.98329 0.99862 0.97450 1.21827 0.98663 0.83628 0.97977 1.48150 1.06462 1.08322 1.71640 1.20118 0.82201 0.89344 0.77822 1.90880 1.77939 1.23603 1.44348 1.21615 0.92875 0.98498 0.99411 0.86359 1.23991 0.91824 0.95879 0.90031 1.86851 1.32771 1.68567 1.33083 1.19542 0.90407 0.96190 0.87268 1.20232 0.90297 1.05248 1.00097 1.20883 0.99633 0.97550 0.91817 1.21024 0.95501 1.02619 0.97504 1.20269 0.93262 0.95672 0.97572 1.20107 0.93435 1.07346 0.94222 0.93618 0.78102 0.96648 0.97020 0.89001 0.91454 0.91377 0.89746 0.91608 0.91751 0.90668 0.91395 0.90955 0.90156 0.89513 0.87076 0.85452 0.85113 0.85374 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.19 13.06 55.49 0.72 -29.46 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.52 29.55 -169.99 -5.02 18.50 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -7.13 9.99 -15.06 -0.15 -7.28 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -20.58 5.60 -59.91 -0.34 -20.92 16 10 C 0.15 3.30 6.03 -4.04 -0.02 3.27 16 11 C -0.12 -2.28 3.29 -26.73 -0.09 -2.37 16 12 C 0.15 2.18 3.02 -67.60 -0.20 1.97 16 13 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.67 4.84 -26.61 -0.13 -1.80 16 15 C -0.12 -1.04 5.89 -26.68 -0.16 -1.20 16 16 C -0.14 -0.96 5.93 -26.61 -0.16 -1.12 16 17 C 0.10 0.76 5.43 -3.71 -0.02 0.74 16 18 N -0.61 -7.31 2.91 -165.22 -0.48 -7.79 16 19 C 0.52 7.42 6.90 -10.99 -0.08 7.35 16 20 O -0.49 -9.54 11.73 5.55 0.07 -9.48 16 21 C -0.10 -1.11 2.52 -91.56 -0.23 -1.34 16 22 H 0.12 0.90 7.85 -51.93 -0.41 0.49 16 23 C 0.06 0.54 6.26 38.06 0.24 0.78 16 24 O -0.30 -4.00 11.10 -20.13 -0.22 -4.23 16 25 C 0.11 1.52 7.04 -38.95 -0.27 1.25 16 26 C -0.14 -1.72 10.06 -39.30 -0.40 -2.11 16 27 C -0.08 -0.88 10.01 -39.68 -0.40 -1.28 16 28 C -0.15 -1.66 10.07 -39.53 -0.40 -2.06 16 29 C -0.05 -0.61 10.03 -39.72 -0.40 -1.01 16 30 C -0.15 -1.96 4.94 -104.10 -0.51 -2.47 16 31 H 0.25 7.89 8.31 -40.82 -0.34 7.56 16 32 H 0.39 11.68 7.67 -40.82 -0.31 11.37 16 33 H 0.02 0.34 6.29 -51.93 -0.33 0.01 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 1.99 6.20 -51.93 -0.32 1.67 16 36 H 0.07 1.47 7.29 -51.93 -0.38 1.09 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.11 6.63 -51.93 -0.34 0.76 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.52 7.11 -51.93 -0.37 0.15 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.43 4.87 -51.93 -0.25 0.17 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.11 0.94 5.22 -51.93 -0.27 0.67 16 47 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 49 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -37.37 385.66 -10.54 -47.91 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.60 Total: 8.92 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.47 Total: -9.27 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.09 Total: -58.17 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.16 Total: -13.71 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.37 -10.54 -47.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715250483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.707 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds