Wall clock time and date at job start Wed Apr 1 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47376 * 270.00002 * 3 2 1 5 5 H 1.48498 * 109.47238 * 30.00132 * 3 2 1 6 6 H 1.48507 * 109.47172 * 150.00129 * 3 2 1 7 7 C 1.38813 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00019 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47707 * 184.91803 * 11 10 9 13 13 H 1.09004 * 109.58413 * 299.13322 * 12 11 10 14 14 C 1.53193 * 109.58264 * 59.41008 * 12 11 10 15 15 C 1.53050 * 109.31301 * 174.56693 * 14 12 11 16 16 C 1.53044 * 109.53651 * 298.64212 * 15 14 12 17 17 C 1.53184 * 109.34314 * 61.34467 * 16 15 14 18 18 N 1.46922 * 109.70993 * 178.77262 * 12 11 10 19 19 C 1.34774 * 120.62658 * 6.53923 * 18 12 11 20 20 O 1.21283 * 120.00190 * 5.80551 * 19 18 12 21 21 C 1.50701 * 120.00049 * 185.81333 * 19 18 12 22 22 H 1.09004 * 110.83106 * 297.72877 * 21 19 18 23 23 C 1.54707 * 110.94674 * 61.44830 * 21 19 18 24 24 O 1.43759 * 102.79621 * 92.79633 * 23 21 19 25 25 C 1.36124 * 109.28817 * 27.55085 * 24 23 21 26 26 C 1.39295 * 129.87796 * 161.45032 * 25 24 23 27 27 C 1.37932 * 120.23881 * 179.59995 * 26 25 24 28 28 C 1.38282 * 120.35631 * 359.97188 * 27 26 25 29 29 C 1.38346 * 119.76444 * 0.19648 * 28 27 26 30 30 C 1.37742 * 119.98105 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99459 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00437 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47364 * 59.99372 * 10 9 7 34 34 H 1.09005 * 109.47254 * 300.00055 * 10 9 7 35 35 H 1.09005 * 109.46973 * 64.92030 * 11 10 9 36 36 H 1.08995 * 109.47211 * 304.92071 * 11 10 9 37 37 H 1.09001 * 109.49950 * 54.62079 * 14 12 11 38 38 H 1.08998 * 109.53126 * 294.53495 * 14 12 11 39 39 H 1.08994 * 109.45830 * 178.61869 * 15 14 12 40 40 H 1.09004 * 109.44286 * 58.65068 * 15 14 12 41 41 H 1.08993 * 109.49771 * 181.31523 * 16 15 14 42 42 H 1.09006 * 109.49260 * 301.37564 * 16 15 14 43 43 H 1.09002 * 109.59167 * 65.16601 * 17 16 15 44 44 H 1.08993 * 109.59143 * 185.59370 * 17 16 15 45 45 H 1.08996 * 110.74710 * 211.12628 * 23 21 19 46 46 H 1.09000 * 110.74554 * 334.28700 * 23 21 19 47 47 H 1.07999 * 119.87477 * 359.57680 * 26 25 24 48 48 H 1.08004 * 119.81594 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.11617 * 180.17958 * 28 27 26 50 50 H 1.08002 * 120.01099 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8246 -6.1413 0.1248 13 1 2.4970 -6.2567 -0.7253 14 6 2.6349 -6.1475 1.4249 15 6 3.2847 -7.5209 1.6098 16 6 2.1966 -8.5921 1.7134 17 6 1.3807 -8.6137 0.4171 18 7 0.8727 -7.2601 0.1555 19 6 -0.4420 -7.0488 -0.0521 20 8 -0.8364 -5.9469 -0.3704 21 6 -1.4223 -8.1817 0.1114 22 1 -1.2156 -8.9792 -0.6023 23 6 -1.4083 -8.7202 1.5617 24 8 -2.4532 -7.9612 2.1932 25 6 -3.3734 -7.5983 1.2581 26 6 -4.6907 -7.1748 1.4187 27 6 -5.4532 -6.8445 0.3178 28 6 -4.9178 -6.9298 -0.9543 29 6 -3.6114 -7.3529 -1.1226 30 6 -2.8495 -7.6877 -0.0250 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6846 -3.7146 -0.8895 35 1 0.4961 -4.8130 -0.9294 36 1 0.3808 -4.7134 0.8440 37 1 1.9738 -5.9417 2.2667 38 1 3.4095 -5.3823 1.3752 39 1 3.8818 -7.5202 2.5216 40 1 3.9264 -7.7366 0.7555 41 1 2.6592 -9.5667 1.8684 42 1 1.5399 -8.3635 2.5529 43 1 2.0164 -8.9310 -0.4096 44 1 0.5442 -9.3043 0.5233 45 1 -1.6393 -9.7852 1.5803 46 1 -0.4461 -8.5269 2.0360 47 1 -5.1165 -7.1053 2.4088 48 1 -6.4740 -6.5173 0.4502 49 1 -5.5174 -6.6674 -1.8133 50 1 -3.1891 -7.4206 -2.1143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715250483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:17 Heat of formation + Delta-G solvation = -33.065484 kcal Electronic energy + Delta-G solvation = -31222.152590 eV Core-core repulsion = 27214.609373 eV Total energy + Delta-G solvation = -4007.543218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.70101 -41.09197 -38.44641 -38.36734 -37.04028 -34.99453 -33.97083 -33.43112 -32.35622 -31.04496 -30.22972 -29.34464 -26.75515 -25.48615 -24.96293 -24.23587 -23.38083 -23.00093 -22.09993 -21.74674 -19.99156 -19.25740 -18.49027 -18.01152 -17.69151 -17.22955 -16.87837 -16.51264 -16.46351 -16.09267 -15.63722 -15.42512 -15.31514 -15.02498 -14.93477 -14.82889 -14.64816 -14.39153 -14.11441 -13.97034 -13.82778 -13.52451 -13.41824 -12.97399 -12.84126 -12.76406 -12.71339 -12.58698 -12.31235 -12.17901 -12.04859 -11.96155 -11.91069 -11.77474 -11.75966 -11.55389 -11.38827 -10.96080 -10.17262 -9.84474 -9.58320 -9.15177 -9.04359 -7.97325 -5.28800 0.27436 0.40563 1.42678 1.47123 1.50795 1.55581 1.90052 2.25904 2.53313 2.74058 3.12082 3.34928 3.43620 3.50056 3.78210 3.79335 3.87274 3.92380 4.07799 4.11193 4.15000 4.19221 4.23388 4.33257 4.34644 4.40819 4.44897 4.49247 4.56117 4.58288 4.66053 4.67939 4.73275 4.77504 4.90383 4.97866 5.02607 5.11206 5.16714 5.23972 5.32540 5.34910 5.38804 5.41723 5.46224 5.49277 5.53094 5.63351 5.68428 6.16847 6.23288 6.41465 7.19054 7.27563 8.03963 8.28789 9.27095 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009177 B = 0.003500 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.264142 B = 7997.347690 C =10348.953660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.081 4.081 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.094 4.094 12 C 0.159 3.841 13 H 0.085 0.915 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.094 3.906 18 N -0.605 5.605 19 C 0.509 3.491 20 O -0.560 6.560 21 C -0.094 4.094 22 H 0.157 0.843 23 C 0.057 3.943 24 O -0.324 6.324 25 C 0.086 3.914 26 C -0.158 4.158 27 C -0.084 4.084 28 C -0.156 4.156 29 C -0.068 4.068 30 C -0.168 4.168 31 H 0.252 0.748 32 H 0.368 0.632 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.159 0.841 49 H 0.150 0.850 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -30.389 1.695 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.382 4.382 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.021 3.979 11 C -0.132 4.132 12 C 0.056 3.944 13 H 0.103 0.897 14 C -0.169 4.169 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.027 4.027 18 N -0.339 5.339 19 C 0.297 3.703 20 O -0.438 6.438 21 C -0.115 4.115 22 H 0.175 0.825 23 C -0.017 4.017 24 O -0.239 6.239 25 C 0.041 3.959 26 C -0.177 4.177 27 C -0.101 4.101 28 C -0.174 4.174 29 C -0.086 4.086 30 C -0.169 4.169 31 H 0.060 0.940 32 H 0.199 0.801 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.146 0.854 46 H 0.137 0.863 47 H 0.156 0.844 48 H 0.176 0.824 49 H 0.168 0.832 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.512 -29.699 1.781 29.791 hybrid contribution -0.117 1.609 -0.128 1.619 sum -1.630 -28.090 1.653 28.185 Atomic orbital electron populations 1.69893 1.07058 1.26172 1.59444 1.25745 0.96451 1.01641 1.03455 0.85008 0.77661 0.78648 0.77634 1.21052 1.21998 1.18921 1.19728 0.91608 0.85292 1.41554 0.90232 1.42649 1.05491 1.01611 1.89396 1.21000 0.94079 0.85304 0.97518 1.21903 0.96165 0.93076 1.02028 1.21102 0.89916 0.84468 0.98920 0.89706 1.22024 0.99172 0.99850 0.95878 1.21521 0.97914 0.92479 1.03253 1.21998 0.97598 1.00911 0.96712 1.22264 1.00183 0.81125 0.99143 1.48237 1.05491 1.09670 1.70455 1.20845 0.83234 0.89497 0.76682 1.90860 1.79065 1.26369 1.47477 1.21665 0.90510 0.97833 1.01512 0.82517 1.24329 0.91370 0.97542 0.88494 1.86795 1.33605 1.69456 1.34043 1.19871 0.91115 0.97165 0.87745 1.20590 0.90452 1.05420 1.01198 1.21259 1.00812 0.96713 0.91351 1.21396 0.95482 1.01957 0.98539 1.20567 0.93996 0.96070 0.97988 1.20431 0.94664 1.07679 0.94174 0.93977 0.80136 0.95510 0.96349 0.91767 0.94970 0.93595 0.90871 0.90592 0.90297 0.87050 0.92181 0.88767 0.87388 0.85363 0.86313 0.84433 0.82362 0.83197 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.31 13.06 21.65 0.28 -65.03 16 2 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 3 Si 0.98 49.00 29.55 68.60 2.03 51.02 16 4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -15.37 9.99 84.03 0.84 -14.53 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.75 -44.14 5.60 -343.44 -1.92 -46.06 16 10 C 0.15 6.82 6.03 86.38 0.52 7.34 16 11 C -0.09 -3.85 3.29 30.59 0.10 -3.75 16 12 C 0.16 4.48 3.02 44.98 0.14 4.62 16 13 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.13 -3.17 4.84 30.68 0.15 -3.02 16 15 C -0.11 -1.64 5.89 30.63 0.18 -1.46 16 16 C -0.13 -1.33 5.93 30.67 0.18 -1.15 16 17 C 0.09 1.03 5.43 86.36 0.47 1.50 16 18 N -0.61 -13.82 2.91 -795.03 -2.32 -16.14 16 19 C 0.51 14.71 6.90 87.66 0.61 15.32 16 20 O -0.56 -23.13 11.73 -3.04 -0.04 -23.17 16 21 C -0.09 -1.92 2.52 -11.40 -0.03 -1.95 16 22 H 0.16 1.88 7.85 -2.39 -0.02 1.86 16 23 C 0.06 0.94 6.26 72.56 0.45 1.40 16 24 O -0.32 -8.69 11.10 -94.96 -1.05 -9.75 16 25 C 0.09 2.41 7.04 22.68 0.16 2.56 16 26 C -0.16 -3.97 10.06 22.45 0.23 -3.75 16 27 C -0.08 -1.82 10.01 22.21 0.22 -1.59 16 28 C -0.16 -3.49 10.07 22.31 0.22 -3.26 16 29 C -0.07 -1.72 10.03 22.18 0.22 -1.49 16 30 C -0.17 -4.44 4.94 -19.53 -0.10 -4.53 16 31 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.37 23.78 7.67 -92.71 -0.71 23.07 16 33 H 0.03 1.19 6.29 -2.38 -0.02 1.18 16 34 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 35 H 0.06 3.01 6.20 -2.38 -0.01 2.99 16 36 H 0.03 1.52 7.29 -2.39 -0.02 1.50 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.90 6.63 -2.39 -0.02 1.89 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.73 7.11 -2.38 -0.02 0.71 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.11 0.63 4.87 -2.39 -0.01 0.62 16 45 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 1.73 5.22 -2.39 -0.01 1.71 16 47 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 48 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 49 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 50 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -87.71 385.66 2.26 -85.45 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.24 Total: 36.01 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.03 Total: -12.35 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -3.96 Total: -127.23 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.09 Total: -32.91 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -87.71 2.26 -85.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715250483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.389 kcal (2) G-P(sol) polarization free energy of solvation -87.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds