Wall clock time and date at job start Wed Apr 1 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 14 14 C 1.34782 * 119.99726 * 154.99585 * 13 11 10 15 15 O 1.21278 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.46780 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.34413 * 305.00188 * 17 16 14 19 19 O 1.42721 * 109.33879 * 64.68519 * 17 16 14 20 20 C 1.43220 * 113.11321 * 172.01344 * 19 17 16 21 21 C 1.52974 * 108.47135 * 289.26925 * 20 19 17 22 22 C 1.50749 * 109.76428 * 49.16649 * 21 20 19 23 23 C 1.38599 * 118.76627 * 163.21813 * 22 21 20 24 24 C 1.38067 * 120.27910 * 179.84901 * 23 22 21 25 25 C 1.38262 * 119.85972 * 359.96871 * 24 23 22 26 26 C 1.38051 * 119.89943 * 0.07430 * 25 24 23 27 27 C 1.37672 * 121.29236 * 343.02013 * 22 21 20 28 28 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 29 29 C 1.52997 * 117.50018 * 248.62456 * 28 11 10 30 30 C 1.52994 * 117.50312 * 179.97438 * 28 11 10 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 0.97000 * 120.00390 * 335.00529 * 13 11 10 36 36 H 1.09000 * 109.47086 * 300.00860 * 16 14 13 37 37 H 1.09006 * 109.46761 * 60.00688 * 16 14 13 38 38 H 1.08993 * 109.64377 * 48.96685 * 20 19 17 39 39 H 1.09002 * 109.63582 * 169.37507 * 20 19 17 40 40 H 1.09000 * 109.42545 * 169.25380 * 21 20 19 41 41 H 1.08997 * 109.42531 * 289.07832 * 21 20 19 42 42 H 1.08001 * 119.86297 * 359.83313 * 23 22 21 43 43 H 1.07997 * 120.07216 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.05036 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.85151 * 180.02562 * 26 25 24 46 46 H 1.09005 * 115.54700 * 34.32403 * 28 11 10 47 47 H 1.09004 * 117.49778 * 359.97438 * 29 28 11 48 48 H 1.08999 * 117.50334 * 145.01706 * 29 28 11 49 49 H 1.09005 * 117.49844 * 214.97844 * 30 28 11 50 50 H 1.08997 * 117.49808 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 1 5.8977 -1.7007 0.9203 13 7 5.9473 -1.3197 -1.1416 14 6 7.0455 -0.5398 -1.0920 15 8 7.7598 -0.5598 -0.1121 16 6 7.3864 0.3563 -2.2547 17 6 8.6707 1.1277 -1.9446 18 1 8.5521 1.6625 -1.0023 19 8 9.7581 0.2100 -1.8336 20 6 11.0311 0.8571 -1.7244 21 6 11.3722 1.4868 -3.0762 22 6 10.1983 2.2903 -3.5751 23 6 10.4048 3.2157 -4.5859 24 6 9.3512 3.9663 -5.0685 25 6 8.0846 3.7935 -4.5415 26 6 7.8782 2.8725 -3.5340 27 6 8.9378 2.1167 -3.0493 28 6 6.3799 -3.5105 -0.1442 29 6 7.1858 -3.9851 1.0665 30 6 7.9081 -3.4428 -0.1690 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.8521 -3.0451 0.8825 34 1 3.8454 -3.0397 -0.8974 35 1 5.3762 -1.3038 -1.9255 36 1 7.5334 -0.2491 -3.1491 37 1 6.5709 1.0601 -2.4223 38 1 10.9833 1.6331 -0.9606 39 1 11.7924 0.1249 -1.4555 40 1 12.2371 2.1404 -2.9637 41 1 11.6043 0.7002 -3.7942 42 1 11.3940 3.3506 -4.9977 43 1 9.5159 4.6868 -5.8559 44 1 7.2581 4.3787 -4.9170 45 1 6.8885 2.7379 -3.1233 46 1 5.8999 -4.2716 -0.7594 47 1 7.1724 -3.3573 1.9575 48 1 7.2363 -5.0586 1.2482 49 1 8.4335 -4.1598 -0.7999 50 1 8.3696 -2.4584 -0.0912 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716628049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:24 Heat of formation + Delta-G solvation = -17.902076 kcal Electronic energy + Delta-G solvation = -30638.256520 eV Core-core repulsion = 26631.370838 eV Total energy + Delta-G solvation = -4006.885683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.77655 -39.68279 -37.77543 -37.09450 -35.14005 -33.92576 -33.42848 -32.43614 -31.36283 -30.23612 -29.07241 -27.94245 -24.66921 -24.04602 -23.76798 -22.28520 -22.04775 -21.29978 -20.43388 -20.23311 -20.01235 -17.87795 -17.55837 -16.82664 -16.48590 -16.18423 -15.82008 -15.60884 -15.16330 -14.94459 -14.64537 -14.39022 -14.29977 -14.00208 -13.69198 -13.54497 -13.37147 -13.22349 -12.80401 -12.69897 -12.56076 -12.30384 -12.17881 -11.98818 -11.87232 -11.60229 -11.25885 -11.17951 -11.10298 -11.01603 -10.90433 -10.80962 -10.22699 -10.11477 -9.91831 -9.77572 -9.63341 -9.51543 -9.02151 -8.95909 -8.86123 -8.67732 -7.29066 -5.80993 -3.17032 1.04426 1.09817 2.85676 3.27401 3.31847 3.37323 3.41489 3.45747 3.62932 4.11924 4.35726 4.40425 4.53671 4.54809 4.63751 4.79293 4.83944 4.85957 4.97938 5.00681 5.10157 5.16440 5.17827 5.25150 5.28638 5.31040 5.39707 5.43150 5.47915 5.56151 5.61844 5.65973 5.72537 5.75133 5.80347 5.81309 5.87768 5.94700 6.14369 6.17353 6.25362 6.30491 6.33890 6.43611 6.54860 6.61166 6.71304 6.87947 7.02014 7.79411 7.94848 8.37595 8.49496 9.16524 9.88592 10.08330 11.37304 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003619 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.447175 B = 7734.933308 C =10267.873662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.166 3.834 12 H 0.087 0.913 13 N -0.715 5.715 14 C 0.517 3.483 15 O -0.532 6.532 16 C -0.137 4.137 17 C 0.150 3.850 18 H 0.080 0.920 19 O -0.354 6.354 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.072 4.072 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.163 4.163 29 C -0.172 4.172 30 C -0.182 4.182 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.403 0.597 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.138 3.022 -9.308 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.062 3.938 12 H 0.105 0.895 13 N -0.366 5.366 14 C 0.304 3.696 15 O -0.409 6.409 16 C -0.176 4.176 17 C 0.092 3.908 18 H 0.098 0.902 19 O -0.273 6.273 20 C -0.017 4.017 21 C -0.153 4.153 22 C -0.072 4.072 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.113 4.113 28 C -0.183 4.183 29 C -0.210 4.210 30 C -0.219 4.219 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.238 0.762 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 24.363 2.717 -8.586 25.974 hybrid contribution 0.156 1.541 -0.567 1.649 sum 24.519 4.258 -9.153 26.516 Atomic orbital electron populations 1.69693 1.05078 1.25843 1.57421 1.24654 0.95194 0.97112 1.01990 0.86600 0.79401 0.85170 0.77743 1.21031 1.21649 1.20330 1.19055 0.80507 0.94770 1.43139 0.89108 1.42694 1.04055 1.02116 1.91237 1.20897 0.87090 0.89751 0.99750 1.20827 0.95022 0.88091 0.89905 0.89506 1.46037 1.26637 1.42800 1.21093 1.20306 0.80600 0.80345 0.88380 1.90623 1.49623 1.66922 1.33724 1.21824 0.97109 0.99725 0.98975 1.20504 0.86733 0.88370 0.95221 0.90217 1.88160 1.13821 1.31296 1.93980 1.22565 0.86305 0.97687 0.95110 1.21164 0.96022 0.99308 0.98811 1.19441 0.94108 0.96981 0.96628 1.21055 0.99204 0.96529 0.97035 1.21127 0.93011 0.99519 0.99952 1.21140 0.97298 0.98447 0.96982 1.21231 0.98673 0.95899 0.97033 1.20253 0.93587 0.98756 0.98734 1.22611 0.93821 0.99049 1.02810 1.22888 1.04682 1.00601 0.92806 1.23273 0.93912 1.04252 1.00444 0.93014 0.80479 0.93911 0.94870 0.76213 0.87848 0.87336 0.92737 0.88334 0.89884 0.89705 0.86065 0.86006 0.85763 0.85467 0.87875 0.88867 0.89263 0.90009 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.79 27.74 -169.99 -4.71 17.08 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.37 5.24 -59.91 -0.31 -17.68 16 10 C 0.15 2.84 5.80 -4.04 -0.02 2.82 16 11 C 0.17 2.66 2.43 -67.93 -0.17 2.50 16 12 H 0.09 1.57 7.33 -51.93 -0.38 1.19 16 13 N -0.71 -10.57 4.50 -53.80 -0.24 -10.81 16 14 C 0.52 7.71 7.04 -10.98 -0.08 7.63 16 15 O -0.53 -9.32 12.43 -9.31 -0.12 -9.44 16 16 C -0.14 -1.63 5.10 -27.88 -0.14 -1.77 16 17 C 0.15 1.84 2.28 -27.91 -0.06 1.78 16 18 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 19 O -0.35 -4.59 9.64 -50.10 -0.48 -5.07 16 20 C 0.06 0.59 6.85 37.14 0.25 0.84 16 21 C -0.12 -0.96 6.01 -27.87 -0.17 -1.13 16 22 C -0.07 -0.72 5.77 -104.67 -0.60 -1.33 16 23 C -0.12 -1.07 9.67 -39.51 -0.38 -1.45 16 24 C -0.12 -1.02 10.05 -39.64 -0.40 -1.42 16 25 C -0.12 -1.13 10.05 -39.64 -0.40 -1.53 16 26 C -0.11 -1.16 9.09 -39.41 -0.36 -1.51 16 27 C -0.11 -1.26 5.46 -104.61 -0.57 -1.83 16 28 C -0.16 -2.27 5.36 -90.62 -0.49 -2.76 16 29 C -0.17 -2.26 10.18 -26.71 -0.27 -2.53 16 30 C -0.18 -2.51 9.73 -26.71 -0.26 -2.77 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.36 8.28 5.20 -40.82 -0.21 8.07 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 5.50 8.60 -40.82 -0.35 5.15 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.14 6.31 -51.93 -0.33 0.81 16 38 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.13 1.22 6.45 -52.49 -0.34 0.89 16 46 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 47 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.12 1.94 5.02 -51.93 -0.26 1.68 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -33.34 397.85 -11.25 -44.59 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.78 Total: 14.84 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -4.37 Total: -11.32 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.22 Total: -56.67 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.60 Total: -14.51 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.34 -11.25 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716628049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.690 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds