Wall clock time and date at job start Wed Apr 1 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09000 * 109.47046 * 294.99604 * 11 10 9 13 13 N 1.46494 * 109.47509 * 54.99655 * 11 10 9 14 14 C 1.34779 * 120.00531 * 205.00222 * 13 11 10 15 15 O 1.21277 * 119.99526 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00383 * 179.97438 * 14 13 11 17 17 C 1.52996 * 109.47129 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.33834 * 55.00323 * 17 16 14 19 19 O 1.42719 * 109.34305 * 295.32141 * 17 16 14 20 20 C 1.43214 * 113.11906 * 187.98930 * 19 17 16 21 21 C 1.52973 * 108.47295 * 70.72398 * 20 19 17 22 22 C 1.50740 * 109.76861 * 310.83913 * 21 20 19 23 23 C 1.38594 * 118.76760 * 196.78288 * 22 21 20 24 24 C 1.38072 * 120.27655 * 180.14814 * 23 22 21 25 25 C 1.38260 * 119.86631 * 0.03011 * 24 23 22 26 26 C 1.38055 * 119.89063 * 359.92817 * 25 24 23 27 27 C 1.37675 * 121.29129 * 16.97309 * 22 21 20 28 28 C 1.53004 * 109.47336 * 175.00083 * 11 10 9 29 29 C 1.53002 * 117.49459 * 248.61837 * 28 11 10 30 30 C 1.52991 * 60.00049 * 252.51110 * 29 28 11 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 0.97009 * 119.99912 * 24.99842 * 13 11 10 36 36 H 1.09001 * 109.46793 * 300.00372 * 16 14 13 37 37 H 1.09005 * 109.46880 * 59.99506 * 16 14 13 38 38 H 1.08996 * 109.63629 * 190.41996 * 20 19 17 39 39 H 1.09005 * 109.63239 * 311.02866 * 20 19 17 40 40 H 1.09000 * 109.42365 * 70.93187 * 21 20 19 41 41 H 1.09000 * 109.42043 * 190.74355 * 21 20 19 42 42 H 1.07998 * 119.86434 * 0.16164 * 23 22 21 43 43 H 1.07995 * 120.06526 * 180.02562 * 24 23 22 44 44 H 1.07993 * 120.05691 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.84894 * 180.02562 * 26 25 24 46 46 H 1.08990 * 115.54870 * 34.32413 * 28 11 10 47 47 H 1.08999 * 117.50200 * 0.02562 * 29 28 11 48 48 H 1.09003 * 117.49500 * 145.01652 * 29 28 11 49 49 H 1.09008 * 117.49643 * 252.51368 * 30 29 28 50 50 H 1.08994 * 117.51967 * 107.48702 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4971 -4.8089 0.9438 13 7 0.1446 -4.6818 -1.1197 14 6 -1.0799 -5.2423 -1.0660 15 8 -1.4211 -5.8604 -0.0800 16 6 -2.0256 -5.0999 -2.2307 17 6 -3.3360 -5.8236 -1.9150 18 1 -3.7405 -5.4449 -0.9764 19 8 -3.0852 -7.2231 -1.7911 20 6 -4.2821 -8.0010 -1.6759 21 6 -4.9969 -7.9937 -3.0284 22 6 -5.1054 -6.5800 -3.5401 23 6 -6.0093 -6.3053 -4.5542 24 6 -6.1321 -5.0219 -5.0484 25 6 -5.3497 -4.0067 -4.5301 26 6 -4.4496 -4.2794 -3.5194 27 6 -4.3253 -5.5704 -3.0229 28 6 1.8245 -6.1418 -0.1060 29 6 1.6645 -6.9347 -1.4047 30 6 1.0017 -7.4316 -0.1185 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 0.4173 -4.1869 -1.9082 36 1 -2.2270 -4.0434 -2.4080 37 1 -1.5741 -5.5380 -3.1209 38 1 -4.0286 -9.0248 -1.4011 39 1 -4.9308 -7.5645 -0.9164 40 1 -4.4313 -8.5946 -3.7405 41 1 -5.9955 -8.4150 -2.9128 42 1 -6.6204 -7.0982 -4.9593 43 1 -6.8379 -4.8115 -5.8383 44 1 -5.4429 -3.0019 -4.9147 45 1 -3.8390 -3.4858 -3.1147 46 1 2.7973 -6.1701 0.3847 47 1 1.0176 -6.5143 -2.1747 48 1 2.5323 -7.4847 -1.7687 49 1 1.4335 -8.3087 0.3638 50 1 -0.0815 -7.3384 -0.0417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716628052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:34 Heat of formation + Delta-G solvation = -17.684860 kcal Electronic energy + Delta-G solvation = -30650.697145 eV Core-core repulsion = 26643.820881 eV Total energy + Delta-G solvation = -4006.876264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68331 -39.68977 -37.67615 -36.91038 -34.84404 -33.81372 -33.18459 -32.33057 -31.17202 -30.08100 -28.84206 -27.70675 -24.53643 -24.00300 -23.83158 -22.15556 -22.13753 -21.41753 -20.33643 -20.11784 -19.52555 -17.57269 -17.28764 -16.66621 -16.39186 -15.95939 -15.79021 -15.61674 -15.35249 -14.67754 -14.51228 -14.35264 -14.01127 -13.86345 -13.53741 -13.32311 -13.29386 -13.13540 -12.88830 -12.60394 -12.44645 -12.16415 -11.96628 -11.85867 -11.54773 -11.49506 -11.28497 -11.08211 -11.00663 -10.87920 -10.80336 -10.70972 -10.20857 -10.05112 -9.77839 -9.67328 -9.50924 -9.38623 -8.92463 -8.90359 -8.76161 -8.52056 -6.96139 -5.78993 -3.08237 1.14439 1.19861 3.01886 3.42195 3.45667 3.47257 3.47920 3.58689 3.74155 4.16572 4.45195 4.49605 4.56661 4.63733 4.74938 4.92850 4.97233 4.99259 5.09001 5.13684 5.21129 5.27479 5.28370 5.31450 5.38163 5.40968 5.51962 5.53948 5.66121 5.67393 5.73766 5.82390 5.85942 5.87734 5.91050 5.94002 6.07716 6.10760 6.27333 6.30202 6.35564 6.40173 6.40933 6.54170 6.66654 6.74697 6.81414 7.02924 7.12923 7.67225 7.95026 8.39303 8.65219 9.51099 10.07236 10.43045 11.43356 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.003186 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.653920 B = 8785.521769 C =11104.273772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.089 0.911 13 N -0.711 5.711 14 C 0.519 3.481 15 O -0.532 6.532 16 C -0.135 4.135 17 C 0.150 3.850 18 H 0.081 0.919 19 O -0.355 6.355 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.162 4.162 29 C -0.176 4.176 30 C -0.185 4.185 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.404 0.596 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 -16.498 -9.676 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.107 0.893 13 N -0.362 5.362 14 C 0.305 3.695 15 O -0.409 6.409 16 C -0.175 4.175 17 C 0.092 3.908 18 H 0.099 0.901 19 O -0.273 6.273 20 C -0.017 4.017 21 C -0.153 4.153 22 C -0.072 4.072 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.113 4.113 28 C -0.182 4.182 29 C -0.213 4.213 30 C -0.222 4.222 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.238 0.762 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.344 -16.884 -8.953 21.731 hybrid contribution 0.078 1.402 -0.540 1.505 sum -10.266 -15.482 -9.493 20.862 Atomic orbital electron populations 1.69655 1.05074 1.25745 1.57544 1.24732 0.95513 0.97647 1.02905 0.86268 0.78516 0.83534 0.77840 1.21292 1.21719 1.21292 1.19176 0.91005 0.84095 1.42986 0.91226 1.42336 1.05978 0.99711 1.89556 1.20910 0.93114 0.85163 0.98845 1.20695 0.90148 0.92622 0.90012 0.89273 1.45968 1.14674 1.55006 1.20556 1.20271 0.82175 0.78575 0.88473 1.90623 1.75925 1.40952 1.33385 1.21809 0.94364 1.02592 0.98731 1.20514 0.92301 0.82810 0.95177 0.90122 1.88157 1.29015 1.16288 1.93842 1.22560 0.87299 0.96723 0.95076 1.21164 1.01774 0.93597 0.98769 1.19433 0.96115 0.95024 0.96665 1.21038 0.98870 0.96974 0.97071 1.21116 0.99516 0.93096 0.99992 1.21141 0.96300 0.99402 0.97054 1.21270 0.98588 0.95995 0.96779 1.20271 0.98427 0.93883 0.98676 1.22694 1.00704 0.92627 1.02149 1.22839 1.02800 1.03973 0.91700 1.23331 1.01847 0.96504 1.00487 0.93488 0.78017 0.95651 0.94969 0.76162 0.87006 0.88238 0.88429 0.92708 0.89793 0.89963 0.86166 0.86100 0.85769 0.85211 0.87545 0.89047 0.89785 0.90057 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.87 5.43 -59.91 -0.33 -18.19 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 C 0.17 2.89 2.59 -67.93 -0.18 2.72 16 12 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 13 N -0.71 -11.17 3.06 -53.81 -0.16 -11.34 16 14 C 0.52 8.22 6.54 -10.99 -0.07 8.15 16 15 O -0.53 -9.88 12.43 -9.27 -0.12 -9.99 16 16 C -0.14 -1.74 5.10 -27.89 -0.14 -1.88 16 17 C 0.15 1.97 2.28 -27.90 -0.06 1.91 16 18 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 19 O -0.35 -4.86 9.64 -50.06 -0.48 -5.35 16 20 C 0.06 0.63 6.85 37.14 0.25 0.88 16 21 C -0.12 -1.04 6.00 -27.88 -0.17 -1.20 16 22 C -0.07 -0.78 5.77 -104.68 -0.60 -1.38 16 23 C -0.12 -1.15 9.67 -39.51 -0.38 -1.54 16 24 C -0.12 -1.11 10.05 -39.63 -0.40 -1.51 16 25 C -0.12 -1.22 10.05 -39.64 -0.40 -1.62 16 26 C -0.11 -1.22 9.09 -39.41 -0.36 -1.58 16 27 C -0.11 -1.34 5.46 -104.61 -0.57 -1.91 16 28 C -0.16 -2.39 5.71 -90.62 -0.52 -2.90 16 29 C -0.18 -2.38 9.73 -26.73 -0.26 -2.64 16 30 C -0.18 -2.70 9.82 -26.74 -0.26 -2.97 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.39 10.00 7.33 -40.82 -0.30 9.70 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 6.05 8.60 -40.82 -0.35 5.70 16 36 H 0.11 1.32 6.31 -51.93 -0.33 1.00 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.38 6.46 -52.48 -0.34 1.04 16 46 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 47 H 0.09 1.26 6.67 -51.93 -0.35 0.91 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 50 H 0.12 2.05 5.02 -51.93 -0.26 1.79 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -32.07 398.04 -11.54 -43.62 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -7.77 Total: 16.79 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.39 Total: -11.78 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.23 Total: -56.33 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.60 Total: -15.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.07 -11.54 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716628052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.932 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds