Wall clock time and date at job start Wed Apr 1 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09000 * 109.47046 * 294.99604 * 11 10 9 13 13 N 1.46494 * 109.47509 * 54.99655 * 11 10 9 14 14 C 1.34779 * 120.00531 * 205.00222 * 13 11 10 15 15 O 1.21277 * 119.99526 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00383 * 179.97438 * 14 13 11 17 17 C 1.52996 * 109.47129 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.33834 * 55.00323 * 17 16 14 19 19 O 1.42719 * 109.34305 * 295.32141 * 17 16 14 20 20 C 1.43214 * 113.11906 * 187.98930 * 19 17 16 21 21 C 1.52973 * 108.47295 * 70.72398 * 20 19 17 22 22 C 1.50740 * 109.76861 * 310.83913 * 21 20 19 23 23 C 1.38594 * 118.76760 * 196.78288 * 22 21 20 24 24 C 1.38072 * 120.27655 * 180.14814 * 23 22 21 25 25 C 1.38260 * 119.86631 * 0.03011 * 24 23 22 26 26 C 1.38055 * 119.89063 * 359.92817 * 25 24 23 27 27 C 1.37675 * 121.29129 * 16.97309 * 22 21 20 28 28 C 1.53004 * 109.47336 * 175.00083 * 11 10 9 29 29 C 1.53002 * 117.49459 * 248.61837 * 28 11 10 30 30 C 1.52991 * 60.00049 * 252.51110 * 29 28 11 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 0.97009 * 119.99912 * 24.99842 * 13 11 10 36 36 H 1.09001 * 109.46793 * 300.00372 * 16 14 13 37 37 H 1.09005 * 109.46880 * 59.99506 * 16 14 13 38 38 H 1.08996 * 109.63629 * 190.41996 * 20 19 17 39 39 H 1.09005 * 109.63239 * 311.02866 * 20 19 17 40 40 H 1.09000 * 109.42365 * 70.93187 * 21 20 19 41 41 H 1.09000 * 109.42043 * 190.74355 * 21 20 19 42 42 H 1.07998 * 119.86434 * 0.16164 * 23 22 21 43 43 H 1.07995 * 120.06526 * 180.02562 * 24 23 22 44 44 H 1.07993 * 120.05691 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.84894 * 180.02562 * 26 25 24 46 46 H 1.08990 * 115.54870 * 34.32413 * 28 11 10 47 47 H 1.08999 * 117.50200 * 0.02562 * 29 28 11 48 48 H 1.09003 * 117.49500 * 145.01652 * 29 28 11 49 49 H 1.09008 * 117.49643 * 252.51368 * 30 29 28 50 50 H 1.08994 * 117.51967 * 107.48702 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4971 -4.8089 0.9438 13 7 0.1446 -4.6818 -1.1197 14 6 -1.0799 -5.2423 -1.0660 15 8 -1.4211 -5.8604 -0.0800 16 6 -2.0256 -5.0999 -2.2307 17 6 -3.3360 -5.8236 -1.9150 18 1 -3.7405 -5.4449 -0.9764 19 8 -3.0852 -7.2231 -1.7911 20 6 -4.2821 -8.0010 -1.6759 21 6 -4.9969 -7.9937 -3.0284 22 6 -5.1054 -6.5800 -3.5401 23 6 -6.0093 -6.3053 -4.5542 24 6 -6.1321 -5.0219 -5.0484 25 6 -5.3497 -4.0067 -4.5301 26 6 -4.4496 -4.2794 -3.5194 27 6 -4.3253 -5.5704 -3.0229 28 6 1.8245 -6.1418 -0.1060 29 6 1.6645 -6.9347 -1.4047 30 6 1.0017 -7.4316 -0.1185 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 0.4173 -4.1869 -1.9082 36 1 -2.2270 -4.0434 -2.4080 37 1 -1.5741 -5.5380 -3.1209 38 1 -4.0286 -9.0248 -1.4011 39 1 -4.9308 -7.5645 -0.9164 40 1 -4.4313 -8.5946 -3.7405 41 1 -5.9955 -8.4150 -2.9128 42 1 -6.6204 -7.0982 -4.9593 43 1 -6.8379 -4.8115 -5.8383 44 1 -5.4429 -3.0019 -4.9147 45 1 -3.8390 -3.4858 -3.1147 46 1 2.7973 -6.1701 0.3847 47 1 1.0176 -6.5143 -2.1747 48 1 2.5323 -7.4847 -1.7687 49 1 1.4335 -8.3087 0.3638 50 1 -0.0815 -7.3384 -0.0417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716628052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:33 Heat of formation + Delta-G solvation = -35.315499 kcal Electronic energy + Delta-G solvation = -30651.461666 eV Core-core repulsion = 26643.820881 eV Total energy + Delta-G solvation = -4007.640785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66109 -40.85865 -38.64911 -38.10409 -36.52784 -34.79605 -34.64796 -33.25608 -32.91967 -31.02306 -30.05549 -28.99884 -26.02059 -25.29913 -24.69743 -23.45061 -23.10713 -22.84128 -21.48542 -20.98069 -20.83081 -19.25363 -18.49206 -17.83236 -17.37997 -17.20584 -16.96621 -16.73954 -16.43134 -16.19836 -15.55240 -15.36853 -15.18537 -15.13933 -14.99602 -14.62548 -14.47834 -14.29998 -14.08930 -13.73422 -13.44758 -13.23846 -13.10818 -13.04069 -12.79324 -12.68080 -12.65384 -12.62552 -12.41496 -12.18658 -12.11557 -11.86764 -11.81936 -11.53085 -11.23978 -10.96528 -10.82824 -10.69833 -10.52214 -9.87353 -9.70685 -9.55735 -8.99527 -7.92825 -5.22115 0.34997 0.42917 1.49289 1.51663 1.57631 1.74419 2.25110 2.57022 2.72065 2.86543 2.99733 3.41118 3.53722 3.66816 3.67752 3.82870 3.91734 3.98605 4.05966 4.13167 4.14434 4.20967 4.23525 4.28774 4.32388 4.45070 4.47727 4.52903 4.60730 4.62503 4.68390 4.69056 4.81999 4.86687 4.89908 4.91933 4.98925 5.07255 5.08793 5.17436 5.18428 5.29672 5.45981 5.51189 5.51629 5.59542 5.62330 5.66310 6.06736 6.20659 6.27800 6.65964 7.35414 7.36996 8.08458 8.33384 9.29878 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.003186 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.653920 B = 8785.521769 C =11104.273772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.151 3.849 11 C 0.181 3.819 12 H 0.058 0.942 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.561 6.561 16 C -0.127 4.127 17 C 0.156 3.844 18 H 0.054 0.946 19 O -0.377 6.377 20 C 0.052 3.948 21 C -0.109 4.109 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.167 4.167 29 C -0.160 4.160 30 C -0.188 4.188 31 H 0.250 0.750 32 H 0.375 0.625 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.408 0.592 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 -17.502 -11.577 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.075 3.925 12 H 0.076 0.924 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.440 6.440 16 C -0.167 4.167 17 C 0.098 3.902 18 H 0.072 0.928 19 O -0.296 6.296 20 C -0.025 4.025 21 C -0.146 4.146 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.130 4.130 28 C -0.187 4.187 29 C -0.197 4.197 30 C -0.225 4.225 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.244 0.756 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.106 0.894 48 H 0.126 0.874 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.001 -17.915 -10.867 23.217 hybrid contribution -0.040 1.642 0.077 1.644 sum -10.041 -16.273 -10.790 21.956 Atomic orbital electron populations 1.69816 1.06531 1.26014 1.59315 1.25520 0.96324 1.00921 1.03633 0.85236 0.77174 0.79320 0.78129 1.20168 1.22385 1.20790 1.19583 0.91540 0.85157 1.41411 0.90487 1.42494 1.05655 1.00821 1.89496 1.21009 0.93387 0.83960 0.99204 1.20415 0.89603 0.93170 0.89273 0.92351 1.45925 1.14672 1.55002 1.20257 1.20759 0.82250 0.77784 0.88840 1.90610 1.76412 1.42263 1.34763 1.21796 0.93807 1.03262 0.97803 1.20325 0.92470 0.82726 0.94722 0.92802 1.88108 1.30910 1.16552 1.94021 1.22790 0.86541 0.96947 0.96181 1.21158 1.02957 0.92862 0.97608 1.19736 0.96127 0.95558 0.97093 1.21367 0.98453 0.97892 0.96349 1.21484 0.99287 0.92759 1.00108 1.21398 0.96066 1.00603 0.96696 1.21355 0.99421 0.95793 0.97627 1.20209 0.99077 0.94741 0.99021 1.22618 1.00972 0.91243 1.03825 1.22910 1.03078 1.02810 0.90873 1.23247 1.00473 0.96944 1.01844 0.94113 0.79293 0.94281 0.94797 0.75633 0.86300 0.86690 0.86868 0.93329 0.89069 0.87516 0.83532 0.83459 0.84305 0.85654 0.86035 0.89403 0.87446 0.88336 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.25 -13.35 9.99 84.03 0.84 -12.51 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.62 5.43 -343.46 -1.87 -38.49 16 10 C 0.15 5.85 5.80 86.38 0.50 6.35 16 11 C 0.18 6.23 2.59 44.99 0.12 6.35 16 12 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 13 N -0.71 -22.71 3.06 -442.55 -1.35 -24.06 16 14 C 0.52 17.04 6.54 87.66 0.57 17.62 16 15 O -0.56 -22.02 12.43 11.16 0.14 -21.88 16 16 C -0.13 -3.40 5.10 29.85 0.15 -3.25 16 17 C 0.16 4.31 2.28 29.84 0.07 4.37 16 18 H 0.05 1.72 7.95 -2.39 -0.02 1.70 16 19 O -0.38 -10.63 9.64 -134.80 -1.30 -11.93 16 20 C 0.05 1.07 6.85 71.97 0.49 1.56 16 21 C -0.11 -1.78 6.00 29.85 0.18 -1.60 16 22 C -0.09 -1.74 5.77 -19.90 -0.11 -1.86 16 23 C -0.12 -2.04 9.67 22.32 0.22 -1.83 16 24 C -0.12 -1.93 10.05 22.24 0.22 -1.71 16 25 C -0.13 -2.48 10.05 22.23 0.22 -2.25 16 26 C -0.12 -2.82 9.09 22.38 0.20 -2.62 16 27 C -0.13 -3.14 5.46 -19.86 -0.11 -3.24 16 28 C -0.17 -4.76 5.71 -10.79 -0.06 -4.82 16 29 C -0.16 -4.03 9.73 30.59 0.30 -3.73 16 30 C -0.19 -5.37 9.82 30.59 0.30 -5.07 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.37 19.99 7.33 -92.71 -0.68 19.31 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.41 12.33 8.60 -92.70 -0.80 11.53 16 36 H 0.12 2.97 6.31 -2.39 -0.02 2.96 16 37 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.04 8.07 -2.38 -0.02 1.02 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.13 2.82 6.46 -2.91 -0.02 2.80 16 46 H 0.12 3.10 8.11 -2.39 -0.02 3.08 16 47 H 0.09 2.29 6.67 -2.39 -0.02 2.28 16 48 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 50 H 0.09 3.29 5.02 -2.39 -0.01 3.28 16 Total: -1.00 -69.67 398.04 1.99 -67.69 By element: Atomic # 1 Polarization: 51.37 SS G_CDS: -0.51 Total: 50.86 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.57 Total: -11.79 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -2.94 Total: -120.39 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.16 Total: -33.82 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.67 1.99 -67.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716628052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.373 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds