Wall clock time and date at job start Wed Apr 1 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47067 * 136.05626 * 359.63192 * 9 7 2 11 11 C 1.53760 * 87.88554 * 152.96394 * 10 9 7 12 12 O 1.42895 * 114.57514 * 272.66139 * 11 10 9 13 13 C 1.53006 * 114.08424 * 139.77927 * 11 10 9 14 14 N 1.46504 * 109.46894 * 86.56224 * 13 11 10 15 15 C 1.34777 * 119.99891 * 179.97438 * 14 13 11 16 16 O 1.21282 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00099 * 179.97438 * 15 14 13 18 18 C 1.52994 * 109.47139 * 179.97438 * 17 15 14 19 19 H 1.09003 * 115.54999 * 29.41844 * 18 17 15 20 20 C 1.53004 * 117.49942 * 243.75089 * 18 17 15 21 21 C 1.53002 * 117.50099 * 175.08538 * 18 17 15 22 22 H 1.09001 * 117.49409 * 0.02562 * 21 18 17 23 23 C 1.52996 * 117.50164 * 215.00275 * 21 18 17 24 24 C 1.50698 * 109.46977 * 174.99811 * 23 21 18 25 25 C 1.38236 * 120.00365 * 269.72697 * 24 23 21 26 26 C 1.38231 * 119.99762 * 179.74289 * 25 24 23 27 27 C 1.38237 * 120.00336 * 0.55639 * 26 25 24 28 28 C 1.38239 * 119.99836 * 359.69819 * 27 26 25 29 29 C 1.38236 * 119.99856 * 0.02562 * 28 27 26 30 30 C 1.47065 * 136.05658 * 180.02562 * 9 7 2 31 31 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 32 32 H 1.09001 * 113.46603 * 267.69372 * 10 9 7 33 33 H 1.08995 * 113.46768 * 38.13227 * 10 9 7 34 34 H 0.96702 * 113.99886 * 273.67722 * 12 11 10 35 35 H 1.08993 * 109.46742 * 206.56210 * 13 11 10 36 36 H 1.09003 * 109.47144 * 326.56150 * 13 11 10 37 37 H 0.96996 * 120.00110 * 359.97438 * 14 13 11 38 38 H 1.09002 * 109.47043 * 300.00435 * 17 15 14 39 39 H 1.09004 * 109.46569 * 60.00073 * 17 15 14 40 40 H 1.08997 * 117.49695 * 359.97438 * 20 18 17 41 41 H 1.09003 * 117.49891 * 145.02316 * 20 18 17 42 42 H 1.08995 * 109.47186 * 295.00351 * 23 21 18 43 43 H 1.08997 * 109.46854 * 55.00225 * 23 21 18 44 44 H 1.07996 * 119.99769 * 0.02562 * 25 24 23 45 45 H 1.08000 * 120.00111 * 180.27348 * 26 25 24 46 46 H 1.07997 * 120.00030 * 179.72235 * 27 26 25 47 47 H 1.07997 * 119.99923 * 180.02562 * 28 27 26 48 48 H 1.07998 * 119.99770 * 179.97438 * 29 28 27 49 49 H 1.08997 * 113.46865 * 321.86117 * 30 9 7 50 50 H 1.08996 * 113.46987 * 92.30674 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.0878 -2.7948 0.0181 11 6 0.3384 -4.0935 -0.6862 12 8 0.3860 -4.0084 -2.1118 13 6 -0.3821 -5.3443 -0.1787 14 7 -1.6432 -5.5102 -0.9057 15 6 -2.4507 -6.5521 -0.6251 16 8 -2.1337 -7.3521 0.2296 17 6 -3.7482 -6.7225 -1.3725 18 6 -4.4679 -7.9740 -0.8661 19 1 -4.2764 -8.2380 0.1740 20 6 -4.6765 -9.1194 -1.8588 21 6 -5.8648 -8.2591 -1.4215 22 1 -6.2708 -7.5552 -2.1480 23 6 -6.8858 -8.8929 -0.4746 24 6 -8.2232 -8.9803 -1.1635 25 6 -9.1250 -7.9380 -1.0572 26 6 -10.3496 -8.0161 -1.6936 27 6 -10.6771 -9.1412 -2.4268 28 6 -9.7774 -10.1858 -2.5288 29 6 -8.5505 -10.1054 -1.8971 30 6 1.6798 -3.8154 0.0065 31 1 -0.4849 0.8401 0.0004 32 1 -0.4840 -2.9547 1.0208 33 1 -0.7284 -2.1583 -0.5923 34 1 -0.4607 -4.1841 -2.5448 35 1 0.2488 -6.2180 -0.3414 36 1 -0.5880 -5.2380 0.8864 37 1 -1.8969 -4.8702 -1.5890 38 1 -4.3791 -5.8488 -1.2091 39 1 -3.5426 -6.8281 -2.4378 40 1 -4.3013 -8.9812 -2.8728 41 1 -4.6226 -10.1370 -1.4717 42 1 -6.5531 -9.8935 -0.1986 43 1 -6.9785 -8.2805 0.4223 44 1 -8.8709 -7.0609 -0.4807 45 1 -11.0524 -7.1999 -1.6142 46 1 -11.6357 -9.2041 -2.9203 47 1 -10.0331 -11.0647 -3.1020 48 1 -7.8477 -10.9216 -1.9765 49 1 2.5452 -4.0486 -0.6137 50 1 1.7492 -4.2442 1.0062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716939481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:45 Heat of formation + Delta-G solvation = 18.548465 kcal Electronic energy + Delta-G solvation = -28372.709607 eV Core-core repulsion = 24367.404539 eV Total energy + Delta-G solvation = -4005.305069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.09782 -39.65001 -38.82355 -37.64746 -35.01794 -33.94931 -32.99236 -32.05432 -31.20559 -30.21374 -28.32993 -27.05940 -25.76330 -24.77507 -22.91297 -22.35387 -22.13095 -21.29543 -20.59163 -20.20876 -19.39532 -17.72405 -17.10208 -16.71089 -16.20576 -15.79201 -15.61039 -15.47070 -15.43162 -14.85350 -14.56218 -14.42135 -14.03667 -13.76816 -13.74518 -13.62206 -13.33792 -13.29551 -12.93625 -12.80637 -12.68427 -12.44583 -12.24351 -11.81292 -11.69198 -11.58872 -11.44955 -11.32380 -11.09061 -10.90407 -10.71959 -10.47566 -10.24467 -10.14532 -10.00034 -9.69565 -9.51076 -9.24472 -9.16095 -8.99139 -8.88385 -8.83869 -6.91799 -5.78845 -3.10725 1.02854 1.07835 2.67426 3.11219 3.39780 3.43171 3.44492 3.45308 3.54764 4.28035 4.42565 4.47937 4.48826 4.51352 4.62741 4.65179 4.71262 4.80685 4.92000 4.99739 5.08355 5.19418 5.20260 5.20513 5.22641 5.29717 5.33008 5.44917 5.46925 5.55046 5.58472 5.61348 5.72396 5.74838 5.76003 5.95692 6.02503 6.12642 6.16125 6.19462 6.30416 6.32886 6.39038 6.51458 6.54548 6.68790 6.97167 7.13640 7.47389 7.48318 7.93677 8.09868 8.25843 9.01135 9.67948 10.58848 11.38911 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.001593 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.600796 B =17575.615401 C =18605.004800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.137 3.863 11 C 0.057 3.943 12 O -0.521 6.521 13 C 0.108 3.892 14 N -0.726 5.726 15 C 0.516 3.484 16 O -0.541 6.541 17 C -0.112 4.112 18 C -0.131 4.131 19 H 0.119 0.881 20 C -0.172 4.172 21 C -0.144 4.144 22 H 0.105 0.895 23 C -0.052 4.052 24 C -0.075 4.075 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.115 4.115 30 C 0.134 3.866 31 H 0.254 0.746 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.360 0.640 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.398 0.602 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.051 0.949 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.874 -20.330 -5.560 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.341 4.341 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.010 3.990 11 C 0.014 3.986 12 O -0.325 6.325 13 C -0.017 4.017 14 N -0.380 5.380 15 C 0.302 3.698 16 O -0.418 6.418 17 C -0.152 4.152 18 C -0.150 4.150 19 H 0.137 0.863 20 C -0.209 4.209 21 C -0.162 4.162 22 H 0.123 0.877 23 C -0.089 4.089 24 C -0.075 4.075 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.133 4.133 30 C 0.007 3.993 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.206 0.794 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.069 0.931 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.930 -20.356 -4.814 28.212 hybrid contribution -0.309 1.156 -0.399 1.261 sum -19.240 -19.200 -5.213 27.676 Atomic orbital electron populations 1.69801 1.05057 1.25455 1.56632 1.24783 0.95730 0.97548 1.02402 0.86147 0.78441 0.82883 0.77977 1.21004 1.21547 1.21139 1.18873 0.90129 0.81214 1.43910 0.90028 1.45270 1.02328 0.99112 1.85740 1.22800 0.89685 0.89887 0.96617 1.23483 0.99820 0.93441 0.81896 1.86645 1.35080 1.93670 1.17079 1.21925 0.84033 0.98619 0.97138 1.45978 1.22123 1.28278 1.41579 1.20531 0.85410 0.80568 0.83279 1.90685 1.74712 1.43184 1.33261 1.21238 0.94213 0.99154 1.00619 1.22167 0.96941 0.95649 1.00211 0.86260 1.23234 1.01818 0.96277 0.99542 1.22399 0.88912 1.02977 1.01896 0.87650 1.20208 0.90375 1.01408 0.96956 1.19870 0.95639 0.94205 0.97790 1.21113 0.93853 0.98535 1.00021 1.21167 0.96879 0.98084 0.97587 1.21152 0.99609 0.94145 0.99675 1.21154 0.94186 0.98780 0.99708 1.21072 0.96739 0.97898 0.97621 1.22386 0.93725 0.87016 0.96219 0.93634 0.94929 0.90515 0.79427 0.91153 0.90279 0.76743 0.88269 0.88757 0.88848 0.88745 0.90728 0.90357 0.85960 0.86138 0.86301 0.86226 0.86144 0.93062 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 11.50 55.49 0.64 -26.68 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -6.10 10.75 -15.06 -0.16 -6.26 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.56 3.78 -184.56 -0.70 -16.26 16 10 C 0.14 3.12 6.85 -8.37 -0.06 3.06 16 11 C 0.06 1.03 1.74 -89.96 -0.16 0.87 16 12 O -0.52 -9.47 13.57 -35.23 -0.48 -9.95 16 13 C 0.11 1.62 5.42 -4.04 -0.02 1.59 16 14 N -0.73 -8.92 5.34 -60.29 -0.32 -9.25 16 15 C 0.52 6.50 7.83 -10.99 -0.09 6.42 16 16 O -0.54 -8.89 15.56 5.56 0.09 -8.80 16 17 C -0.11 -0.98 5.98 -27.89 -0.17 -1.15 16 18 C -0.13 -1.19 5.13 -90.62 -0.46 -1.66 16 19 H 0.12 1.32 7.31 -51.93 -0.38 0.94 16 20 C -0.17 -1.35 9.83 -26.68 -0.26 -1.62 16 21 C -0.14 -1.08 5.44 -90.58 -0.49 -1.58 16 22 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 23 C -0.05 -0.38 5.63 -27.89 -0.16 -0.53 16 24 C -0.08 -0.58 5.09 -104.62 -0.53 -1.11 16 25 C -0.12 -0.89 9.70 -39.58 -0.38 -1.28 16 26 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 29 C -0.12 -0.86 9.70 -39.58 -0.38 -1.24 16 30 C 0.13 2.78 8.11 -8.49 -0.07 2.71 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 32 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.08 1.94 7.10 -51.93 -0.37 1.57 16 34 H 0.36 4.75 7.21 45.56 0.33 5.08 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.25 7.89 -51.93 -0.41 0.85 16 37 H 0.40 3.99 6.95 -40.82 -0.28 3.70 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 40 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 42 H 0.07 0.51 7.82 -51.93 -0.41 0.10 16 43 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -35.13 414.70 -11.59 -46.72 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.36 Total: 6.59 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.69 Total: -5.87 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.38 Total: -52.18 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.39 Total: -18.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.13 -11.59 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716939481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.273 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds