Wall clock time and date at job start Wed Apr 1 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99633 * 2 1 4 4 H 1.48494 * 109.47283 * 269.54119 * 3 2 1 5 5 H 1.48498 * 109.47264 * 29.54328 * 3 2 1 6 6 H 1.48504 * 109.46761 * 149.54522 * 3 2 1 7 7 C 1.38815 * 119.99918 * 179.72748 * 2 1 3 8 8 H 1.07998 * 119.99638 * 345.04625 * 7 2 1 9 9 N 1.36930 * 119.99802 * 165.05191 * 7 2 1 10 10 C 1.47154 * 120.98192 * 328.48399 * 9 7 2 11 11 C 1.53300 * 108.38476 * 230.51228 * 10 9 7 12 12 O 1.42956 * 109.22371 * 307.69916 * 11 10 9 13 13 C 1.42960 * 114.16794 * 62.58084 * 12 11 10 14 14 C 1.47150 * 120.98550 * 148.20399 * 9 7 2 15 15 H 1.09003 * 109.68280 * 249.21134 * 14 9 7 16 16 C 1.53009 * 109.67737 * 9.76342 * 14 9 7 17 17 N 1.46495 * 109.46760 * 299.68094 * 16 14 9 18 18 C 1.34784 * 119.99640 * 180.02562 * 17 16 14 19 19 O 1.21279 * 119.99957 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99887 * 180.02562 * 18 17 16 21 21 C 1.50694 * 109.47101 * 179.97438 * 20 18 17 22 22 C 1.38258 * 120.00031 * 269.72639 * 21 20 18 23 23 C 1.38214 * 120.00128 * 179.81195 * 22 21 20 24 24 C 1.38253 * 119.99901 * 0.41509 * 23 22 21 25 25 C 1.38216 * 120.00015 * 359.81572 * 24 23 22 26 26 C 1.50701 * 120.00375 * 179.97438 * 25 24 23 27 27 C 1.53003 * 117.49643 * 8.77160 * 26 25 24 28 28 C 1.52997 * 117.49759 * 300.11478 * 26 25 24 29 29 C 1.38212 * 120.00258 * 89.99740 * 21 20 18 30 30 H 0.96994 * 119.99997 * 0.27731 * 1 2 3 31 31 H 1.08995 * 109.68356 * 350.23759 * 10 9 7 32 32 H 1.08998 * 109.67985 * 110.75528 * 10 9 7 33 33 H 1.08997 * 109.50854 * 67.62548 * 11 10 9 34 34 H 1.08999 * 109.51030 * 187.71908 * 11 10 9 35 35 H 1.09001 * 109.51813 * 57.33954 * 13 12 11 36 36 H 1.08998 * 109.51700 * 177.49895 * 13 12 11 37 37 H 1.08998 * 109.47226 * 59.68114 * 16 14 9 38 38 H 1.08999 * 109.46822 * 179.68440 * 16 14 9 39 39 H 0.96998 * 120.00812 * 359.97438 * 17 16 14 40 40 H 1.08998 * 109.47059 * 299.99740 * 20 18 17 41 41 H 1.08998 * 109.46835 * 59.99695 * 20 18 17 42 42 H 1.07999 * 120.00183 * 359.97438 * 22 21 20 43 43 H 1.07995 * 120.00368 * 180.21106 * 23 22 21 44 44 H 1.07995 * 120.00170 * 179.79600 * 24 23 22 45 45 H 1.09000 * 115.55111 * 154.43758 * 26 25 24 46 46 H 1.09002 * 117.49515 * 0.02562 * 27 26 25 47 47 H 1.08997 * 117.49982 * 145.01455 * 27 26 25 48 48 H 1.09009 * 117.49636 * 214.97643 * 28 26 25 49 49 H 1.08996 * 117.50240 * 359.97204 * 28 26 25 50 50 H 1.08005 * 119.99400 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5073 2.0409 -1.4000 5 1 1.4427 2.6554 0.6903 6 1 3.5429 1.4430 0.7097 7 6 2.0103 -1.2022 0.0057 8 1 1.4977 -2.1204 0.2514 9 7 3.3448 -1.2237 -0.3001 10 6 3.9200 -0.2579 -1.2498 11 6 4.7384 -1.0315 -2.2900 12 8 5.6638 -1.8890 -1.6179 13 6 5.0487 -2.8912 -0.8047 14 6 4.2474 -2.2092 0.3159 15 1 4.9273 -1.7054 1.0029 16 6 3.4277 -3.2547 1.0750 17 7 2.6486 -2.5953 2.1259 18 6 1.8468 -3.3238 2.9279 19 8 1.7700 -4.5250 2.7792 20 6 1.0449 -2.6455 4.0086 21 6 0.2377 -3.6751 4.7563 22 6 -1.0407 -3.9908 4.3348 23 6 -1.7796 -4.9380 5.0183 24 6 -1.2436 -5.5636 6.1286 25 6 0.0325 -5.2445 6.5529 26 6 0.6166 -5.9259 7.7635 27 6 -0.1621 -7.1019 8.3566 28 6 -0.1228 -5.7604 9.0927 29 6 0.7731 -4.2998 5.8669 30 1 -0.4850 0.8400 -0.0041 31 1 3.1193 0.2902 -1.7462 32 1 4.5670 0.4394 -0.7176 33 1 4.0691 -1.6306 -2.9074 34 1 5.2835 -0.3288 -2.9201 35 1 4.3806 -3.4971 -1.4166 36 1 5.8179 -3.5265 -0.3656 37 1 2.7521 -3.7587 0.3838 38 1 4.0991 -3.9860 1.5250 39 1 2.7103 -1.6347 2.2451 40 1 1.7202 -2.1408 4.6995 41 1 0.3732 -1.9147 3.5581 42 1 -1.4609 -3.4993 3.4698 43 1 -2.7768 -5.1871 4.6870 44 1 -1.8222 -6.3013 6.6646 45 1 1.7049 -5.9755 7.7958 46 1 -1.0965 -7.3829 7.8708 47 1 0.4140 -7.9250 8.7793 48 1 0.4792 -5.7014 9.9996 49 1 -1.0314 -5.1583 9.0917 50 1 1.7702 -4.0503 6.1985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717137750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:21 Heat of formation + Delta-G solvation = -17.792798 kcal Electronic energy + Delta-G solvation = -30312.109192 eV Core-core repulsion = 26305.228248 eV Total energy + Delta-G solvation = -4006.880944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16805 -40.50252 -39.81136 -37.69683 -36.98177 -35.28652 -33.76837 -33.44770 -32.47252 -31.67200 -29.37411 -28.73788 -26.56649 -25.20462 -24.66459 -23.83372 -23.38713 -22.86068 -21.61486 -21.44316 -20.38483 -18.82930 -17.95737 -17.80023 -17.61579 -17.24278 -16.93315 -16.65963 -16.49607 -16.10028 -16.02516 -15.57658 -15.53542 -15.26463 -15.05479 -14.80206 -14.49863 -14.40504 -14.02871 -13.89569 -13.54681 -13.45546 -13.26025 -13.08182 -12.81444 -12.76921 -12.43581 -12.33163 -12.30513 -12.04709 -12.02072 -11.83881 -11.54879 -11.53215 -11.36045 -11.20582 -11.09325 -10.82417 -10.51539 -9.83699 -9.66836 -9.37952 -8.82864 -8.10070 -5.51745 0.39808 0.48535 1.32461 1.44355 1.51632 1.77138 2.35460 2.43658 2.74409 2.91084 3.04883 3.19909 3.23210 3.58546 3.78010 3.94620 3.99282 4.00661 4.03800 4.15279 4.18549 4.19750 4.23590 4.27708 4.31287 4.39597 4.40480 4.47703 4.53896 4.61308 4.64628 4.70074 4.72780 4.76585 4.82344 4.91482 4.93615 4.98858 5.13507 5.14821 5.20726 5.22154 5.28239 5.56780 5.63092 5.68373 5.71452 5.88565 6.11690 6.19299 6.22476 6.72575 6.86692 7.39261 7.59443 8.00989 9.07132 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.002664 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.269755 B =10508.504183 C =11529.287352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.021 4.021 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.317 1.317 6 H -0.258 1.258 7 C -0.236 4.236 8 H 0.065 0.935 9 N -0.620 5.620 10 C 0.084 3.916 11 C 0.053 3.947 12 O -0.390 6.390 13 C 0.056 3.944 14 C 0.129 3.871 15 H 0.059 0.941 16 C 0.142 3.858 17 N -0.696 5.696 18 C 0.513 3.487 19 O -0.588 6.588 20 C -0.099 4.099 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.058 4.058 26 C -0.134 4.134 27 C -0.171 4.171 28 C -0.160 4.160 29 C -0.113 4.113 30 H 0.260 0.740 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.123 0.877 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.093 0.907 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -7.766 12.937 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.217 4.217 3 Si 0.770 3.230 4 H -0.209 1.209 5 H -0.246 1.246 6 H -0.182 1.182 7 C -0.365 4.365 8 H 0.083 0.917 9 N -0.347 5.347 10 C -0.041 4.041 11 C -0.025 4.025 12 O -0.308 6.308 13 C -0.022 4.022 14 C 0.024 3.976 15 H 0.076 0.924 16 C 0.018 3.982 17 N -0.346 5.346 18 C 0.301 3.699 19 O -0.470 6.470 20 C -0.138 4.138 21 C -0.066 4.066 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.058 4.058 26 C -0.152 4.152 27 C -0.208 4.208 28 C -0.197 4.197 29 C -0.131 4.131 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.065 0.935 36 H 0.141 0.859 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.247 0.753 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.133 0.867 46 H 0.119 0.881 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.112 0.888 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.670 -8.498 12.806 16.063 hybrid contribution -0.549 1.684 -0.596 1.869 sum 4.121 -6.814 12.210 14.577 Atomic orbital electron populations 1.69917 1.07233 1.26923 1.55586 1.25845 0.95538 1.00263 1.00012 0.86066 0.78580 0.80833 0.77559 1.20891 1.24599 1.18196 1.18773 0.83320 0.93191 1.41219 0.91722 1.44560 1.04948 1.37134 1.48048 1.22129 0.96817 0.93007 0.92116 1.23032 0.92350 0.93453 0.93701 1.87836 1.33402 1.46222 1.63337 1.23083 0.97627 0.89733 0.91753 1.21712 0.91579 0.90180 0.94160 0.92361 1.21070 0.93598 0.94434 0.89095 1.45956 1.44414 1.11887 1.32368 1.20766 0.79405 0.86958 0.82783 1.90629 1.66967 1.16250 1.73161 1.20651 0.99181 0.97573 0.96401 1.19396 0.94254 0.97492 0.95485 1.21172 0.94985 0.99230 0.99854 1.21305 1.00557 0.96122 0.95836 1.21237 0.95584 1.00625 0.97273 1.19345 0.94292 0.96085 0.96082 1.21046 0.98792 1.03295 0.92052 1.23178 1.02418 0.91991 1.03218 1.23095 1.02355 0.99859 0.94405 1.20916 1.00023 0.96883 0.95300 0.93119 0.91885 0.94229 0.93466 0.86615 0.93471 0.85885 0.94249 0.89979 0.75262 0.85688 0.88343 0.87328 0.84338 0.83951 0.86724 0.88132 0.87104 0.86979 0.88817 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.36 13.97 21.65 0.30 -55.06 16 2 C -0.02 -1.10 5.31 84.86 0.45 -0.65 16 3 Si 0.94 42.66 24.28 68.60 1.67 44.33 16 4 H -0.28 -12.40 6.60 99.48 0.66 -11.74 16 5 H -0.32 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.26 -11.02 6.50 99.48 0.65 -10.38 16 7 C -0.24 -11.77 7.47 84.04 0.63 -11.14 16 8 H 0.07 3.64 6.05 -2.91 -0.02 3.63 16 9 N -0.62 -25.99 2.77 -672.93 -1.86 -27.85 16 10 C 0.08 3.26 4.37 86.36 0.38 3.64 16 11 C 0.05 1.69 6.98 72.08 0.50 2.19 16 12 O -0.39 -12.50 10.74 -148.98 -1.60 -14.10 16 13 C 0.06 1.69 6.31 72.22 0.46 2.14 16 14 C 0.13 4.45 3.23 45.11 0.15 4.60 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.14 5.06 4.46 86.38 0.39 5.45 16 17 N -0.70 -25.83 3.77 -463.05 -1.75 -27.57 16 18 C 0.51 19.63 7.82 87.66 0.69 20.32 16 19 O -0.59 -26.21 16.03 -3.02 -0.05 -26.26 16 20 C -0.10 -3.15 5.83 29.10 0.17 -2.98 16 21 C -0.07 -2.11 4.37 -19.87 -0.09 -2.20 16 22 C -0.13 -4.38 9.70 22.27 0.22 -4.16 16 23 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 24 C -0.13 -3.16 9.30 22.27 0.21 -2.95 16 25 C -0.06 -1.46 5.61 -19.87 -0.11 -1.57 16 26 C -0.13 -2.56 6.04 -11.54 -0.07 -2.63 16 27 C -0.17 -2.54 9.86 30.62 0.30 -2.23 16 28 C -0.16 -2.36 10.17 30.62 0.31 -2.05 16 29 C -0.11 -3.21 9.39 22.27 0.21 -3.00 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.06 2.67 4.94 -2.39 -0.01 2.66 16 32 H 0.04 1.51 6.71 -2.39 -0.02 1.50 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.41 15.37 7.29 -92.71 -0.68 14.69 16 40 H 0.13 3.15 8.09 -2.39 -0.02 3.13 16 41 H 0.10 3.36 8.08 -2.39 -0.02 3.34 16 42 H 0.11 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.14 2.66 6.03 -2.91 -0.02 2.65 16 45 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 46 H 0.10 1.43 6.18 -2.39 -0.01 1.42 16 47 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -67.41 392.88 1.88 -65.53 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: 0.16 Total: 41.30 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.00 Total: -0.31 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.31 Total: -110.48 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.65 Total: -40.36 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.67 Total: 44.33 kcal Total: -67.41 1.88 -65.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717137750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.735 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds