Wall clock time and date at job start Wed Apr 1 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47301 * 270.00094 * 3 2 1 5 5 H 1.48499 * 109.47071 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.47111 * 150.00025 * 3 2 1 7 7 C 1.38812 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99747 * 190.73202 * 7 2 1 9 9 N 1.36936 * 120.00267 * 10.72765 * 7 2 1 10 10 C 1.47154 * 120.97604 * 31.18493 * 9 7 2 11 11 C 1.53299 * 108.38088 * 129.48976 * 10 9 7 12 12 O 1.42955 * 109.22694 * 52.30125 * 11 10 9 13 13 C 1.42967 * 114.16508 * 297.41871 * 12 11 10 14 14 C 1.47151 * 120.98680 * 211.20809 * 9 7 2 15 15 H 1.08999 * 109.67888 * 110.74803 * 14 9 7 16 16 C 1.53004 * 109.67744 * 350.23823 * 14 9 7 17 17 N 1.46498 * 109.47265 * 60.58643 * 16 14 9 18 18 C 1.34777 * 119.99756 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00210 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.99982 * 180.02562 * 18 17 16 21 21 C 1.50696 * 109.47254 * 180.02562 * 20 18 17 22 22 C 1.38267 * 119.99920 * 269.72476 * 21 20 18 23 23 C 1.38210 * 119.99752 * 179.80972 * 22 21 20 24 24 C 1.38257 * 120.00259 * 0.39862 * 23 22 21 25 25 C 1.38212 * 119.99597 * 359.85534 * 24 23 22 26 26 C 1.50704 * 119.99564 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.50141 * 8.72445 * 26 25 24 28 28 C 1.53000 * 117.50037 * 300.06396 * 26 25 24 29 29 C 1.38214 * 120.00178 * 90.00062 * 21 20 18 30 30 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.68103 * 249.20663 * 10 9 7 32 32 H 1.08996 * 109.68515 * 9.76588 * 10 9 7 33 33 H 1.09007 * 109.51078 * 172.22699 * 11 10 9 34 34 H 1.08997 * 109.51230 * 292.36964 * 11 10 9 35 35 H 1.09000 * 109.51024 * 302.65817 * 13 12 11 36 36 H 1.09004 * 109.51486 * 182.50317 * 13 12 11 37 37 H 1.08995 * 109.46941 * 300.58274 * 16 14 9 38 38 H 1.09000 * 109.46882 * 180.59090 * 16 14 9 39 39 H 0.96998 * 119.99734 * 0.27319 * 17 16 14 40 40 H 1.09007 * 109.46998 * 299.99833 * 20 18 17 41 41 H 1.08998 * 109.47149 * 59.99481 * 20 18 17 42 42 H 1.07996 * 119.99668 * 359.97438 * 22 21 20 43 43 H 1.07997 * 119.99840 * 180.22671 * 23 22 21 44 44 H 1.08002 * 119.99961 * 179.83466 * 24 23 22 45 45 H 1.08999 * 115.55033 * 154.39408 * 26 25 24 46 46 H 1.08999 * 117.49533 * 0.02562 * 27 26 25 47 47 H 1.08998 * 117.50225 * 145.01867 * 27 26 25 48 48 H 1.08999 * 117.49845 * 214.98288 * 28 26 25 49 49 H 1.08998 * 117.49879 * 0.02562 * 28 26 25 50 50 H 1.07997 * 120.00006 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0761 -1.2103 0.1736 9 7 1.3436 -2.3776 -0.2218 10 6 0.1536 -2.4223 -1.0863 11 6 0.3404 -3.5498 -2.1080 12 8 0.6711 -4.7585 -1.4201 13 6 1.9025 -4.7016 -0.6959 14 6 1.7957 -3.6333 0.3982 15 1 1.0757 -3.9502 1.1526 16 6 3.1646 -3.4230 1.0486 17 7 3.0598 -2.3932 2.0852 18 6 4.1486 -2.0399 2.7966 19 8 5.2151 -2.5749 2.5789 20 6 4.0407 -0.9809 3.8633 21 6 5.3890 -0.7738 4.5038 22 6 5.7495 -1.5178 5.6120 23 6 6.9876 -1.3306 6.1970 24 6 7.8624 -0.3937 5.6791 25 6 7.4999 0.3537 4.5744 26 6 8.4533 1.3754 4.0102 27 6 9.8770 1.3983 4.5701 28 6 8.8941 2.5148 4.9312 29 6 6.2630 0.1638 3.9868 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7321 -2.6178 -0.4818 32 1 0.0414 -1.4708 -1.6059 33 1 -0.5843 -3.6907 -2.6678 34 1 1.1461 -3.2893 -2.7944 35 1 2.7139 -4.4453 -1.3772 36 1 2.1017 -5.6713 -0.2397 37 1 3.8815 -3.1051 0.2916 38 1 3.5009 -4.3576 1.4975 39 1 2.2058 -1.9687 2.2624 40 1 3.7046 -0.0461 3.4145 41 1 3.3236 -1.2991 4.6199 42 1 5.0646 -2.2470 6.0189 43 1 7.2706 -1.9143 7.0605 44 1 8.8289 -0.2456 6.1379 45 1 8.3249 1.6045 2.9523 46 1 10.1241 0.6741 5.3463 47 1 10.6851 1.6427 3.8807 48 1 9.0559 3.4934 4.4792 49 1 8.4949 2.5253 5.9454 50 1 5.9798 0.7478 3.1236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717137751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:26 Heat of formation + Delta-G solvation = -5.922148 kcal Electronic energy + Delta-G solvation = -30419.651771 eV Core-core repulsion = 26413.285577 eV Total energy + Delta-G solvation = -4006.366194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.96065 -39.09171 -38.27865 -36.82237 -35.30640 -33.56213 -32.53233 -31.49887 -30.72604 -30.44780 -27.80765 -27.11499 -25.11382 -23.74998 -23.48017 -22.70647 -22.08817 -21.65249 -20.23150 -19.73981 -19.23202 -17.16476 -16.86543 -16.17953 -16.02181 -15.86606 -15.68860 -15.15107 -14.92791 -14.64823 -14.50822 -14.23491 -13.98789 -13.88051 -13.70084 -13.35129 -13.00276 -12.95453 -12.71238 -12.43951 -12.23351 -12.09734 -11.72394 -11.63757 -11.47321 -11.15752 -11.07191 -10.93448 -10.91958 -10.76241 -10.69209 -10.44819 -10.43351 -10.27594 -10.07909 -9.69281 -9.44851 -9.00779 -8.70275 -8.62622 -8.41155 -8.25619 -6.76448 -5.94087 -3.44081 1.40219 1.49994 3.19818 3.24532 3.33009 3.34146 3.49803 3.84578 4.11437 4.30843 4.43602 4.51885 4.70982 4.82241 4.87387 4.97046 5.09823 5.12257 5.15992 5.23292 5.42766 5.43284 5.47502 5.52062 5.59108 5.63436 5.71519 5.74525 5.78519 5.84752 5.90736 5.92511 6.00514 6.08038 6.13844 6.14380 6.17805 6.23048 6.31151 6.50485 6.54092 6.65759 6.73931 6.75074 7.04782 7.09876 7.12455 7.46098 7.67210 7.84593 8.22146 8.26806 8.85276 9.02309 9.62528 10.21985 11.12321 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.002979 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.891070 B = 9397.277788 C =10648.246630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.137 3.863 17 N -0.696 5.696 18 C 0.511 3.489 19 O -0.556 6.556 20 C -0.107 4.107 21 C -0.049 4.049 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.053 4.053 26 C -0.115 4.115 27 C -0.178 4.178 28 C -0.171 4.171 29 C -0.098 4.098 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -0.327 9.120 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.347 5.347 18 C 0.297 3.703 19 O -0.435 6.435 20 C -0.147 4.147 21 C -0.049 4.049 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.053 4.053 26 C -0.133 4.133 27 C -0.215 4.215 28 C -0.207 4.207 29 C -0.116 4.116 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.768 -0.715 8.955 14.024 hybrid contribution 0.037 1.426 -0.121 1.431 sum 10.805 0.711 8.834 13.975 Atomic orbital electron populations 1.69978 1.05167 1.25668 1.53539 1.25142 0.95288 0.98156 1.00418 0.86408 0.79199 0.83851 0.78096 1.21328 1.21533 1.20210 1.19255 0.91360 0.83285 1.44504 0.90826 1.44091 1.31963 1.02949 1.52685 1.21417 0.88890 0.96802 0.91054 1.23353 0.99128 0.86555 0.95286 1.87800 1.40285 1.36102 1.66929 1.22869 0.86664 0.98714 0.94076 1.21430 0.93753 0.89270 0.93741 0.94129 1.21130 0.97393 0.90109 0.90103 1.46001 1.12448 1.40462 1.35832 1.20292 0.84181 0.83370 0.82501 1.90665 1.28140 1.55629 1.69054 1.20695 0.95760 1.00301 0.97919 1.19306 0.95043 0.95626 0.94957 1.20956 0.96838 0.98963 0.96092 1.20994 0.94072 0.98414 1.00064 1.20922 0.99521 0.97160 0.96878 1.19019 0.94031 0.96519 0.95715 1.21040 0.94986 0.98388 0.98896 1.23059 0.92535 1.02026 1.03834 1.23024 1.03457 0.93786 1.00478 1.20812 0.93069 0.98258 0.99430 0.93433 0.95257 0.88976 0.90243 0.94138 0.93522 0.89928 0.91642 0.92467 0.74719 0.87817 0.88209 0.86313 0.86292 0.86406 0.86978 0.88408 0.88559 0.88564 0.88637 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.71 11.14 55.49 0.62 -23.09 16 2 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 3 Si 0.89 20.22 29.57 -169.99 -5.03 15.19 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.25 -6.15 7.06 -15.06 -0.11 -6.25 16 8 H 0.07 1.82 5.81 -52.49 -0.30 1.52 16 9 N -0.59 -13.35 3.03 -164.30 -0.50 -13.85 16 10 C 0.14 3.22 5.38 -3.53 -0.02 3.20 16 11 C 0.03 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.59 10.74 -35.23 -0.38 -7.97 16 13 C 0.06 0.98 6.29 37.31 0.23 1.22 16 14 C 0.13 2.41 3.21 -67.42 -0.22 2.19 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.51 4.45 -4.04 -0.02 2.49 16 17 N -0.70 -12.75 3.76 -60.30 -0.23 -12.97 16 18 C 0.51 9.29 7.82 -10.99 -0.09 9.21 16 19 O -0.56 -11.78 16.03 5.55 0.09 -11.69 16 20 C -0.11 -1.60 5.83 -29.04 -0.17 -1.77 16 21 C -0.05 -0.73 4.37 -104.62 -0.46 -1.19 16 22 C -0.11 -1.50 9.70 -39.58 -0.38 -1.88 16 23 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 24 C -0.13 -1.55 9.30 -39.58 -0.37 -1.92 16 25 C -0.05 -0.71 5.61 -104.62 -0.59 -1.30 16 26 C -0.12 -1.31 6.04 -91.77 -0.55 -1.86 16 27 C -0.18 -1.63 9.86 -26.70 -0.26 -1.90 16 28 C -0.17 -1.58 10.17 -26.69 -0.27 -1.86 16 29 C -0.10 -1.48 9.39 -39.58 -0.37 -1.85 16 30 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.32 7.57 -51.93 -0.39 0.92 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.41 7.85 7.33 -40.82 -0.30 7.55 16 40 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 41 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.18 6.02 -52.49 -0.32 0.86 16 45 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.10 0.84 6.18 -51.93 -0.32 0.52 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -29.34 399.61 -11.12 -40.45 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.86 Total: 12.13 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.86 Total: -4.23 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.29 Total: -19.66 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.34 -11.12 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717137751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.533 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds