Wall clock time and date at job start Wed Apr 1 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47301 * 270.00094 * 3 2 1 5 5 H 1.48499 * 109.47071 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.47111 * 150.00025 * 3 2 1 7 7 C 1.38812 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99747 * 190.73202 * 7 2 1 9 9 N 1.36936 * 120.00267 * 10.72765 * 7 2 1 10 10 C 1.47154 * 120.97604 * 31.18493 * 9 7 2 11 11 C 1.53299 * 108.38088 * 129.48976 * 10 9 7 12 12 O 1.42955 * 109.22694 * 52.30125 * 11 10 9 13 13 C 1.42967 * 114.16508 * 297.41871 * 12 11 10 14 14 C 1.47151 * 120.98680 * 211.20809 * 9 7 2 15 15 H 1.08999 * 109.67888 * 110.74803 * 14 9 7 16 16 C 1.53004 * 109.67744 * 350.23823 * 14 9 7 17 17 N 1.46498 * 109.47265 * 60.58643 * 16 14 9 18 18 C 1.34777 * 119.99756 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00210 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.99982 * 180.02562 * 18 17 16 21 21 C 1.50696 * 109.47254 * 180.02562 * 20 18 17 22 22 C 1.38267 * 119.99920 * 269.72476 * 21 20 18 23 23 C 1.38210 * 119.99752 * 179.80972 * 22 21 20 24 24 C 1.38257 * 120.00259 * 0.39862 * 23 22 21 25 25 C 1.38212 * 119.99597 * 359.85534 * 24 23 22 26 26 C 1.50704 * 119.99564 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.50141 * 8.72445 * 26 25 24 28 28 C 1.53000 * 117.50037 * 300.06396 * 26 25 24 29 29 C 1.38214 * 120.00178 * 90.00062 * 21 20 18 30 30 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.68103 * 249.20663 * 10 9 7 32 32 H 1.08996 * 109.68515 * 9.76588 * 10 9 7 33 33 H 1.09007 * 109.51078 * 172.22699 * 11 10 9 34 34 H 1.08997 * 109.51230 * 292.36964 * 11 10 9 35 35 H 1.09000 * 109.51024 * 302.65817 * 13 12 11 36 36 H 1.09004 * 109.51486 * 182.50317 * 13 12 11 37 37 H 1.08995 * 109.46941 * 300.58274 * 16 14 9 38 38 H 1.09000 * 109.46882 * 180.59090 * 16 14 9 39 39 H 0.96998 * 119.99734 * 0.27319 * 17 16 14 40 40 H 1.09007 * 109.46998 * 299.99833 * 20 18 17 41 41 H 1.08998 * 109.47149 * 59.99481 * 20 18 17 42 42 H 1.07996 * 119.99668 * 359.97438 * 22 21 20 43 43 H 1.07997 * 119.99840 * 180.22671 * 23 22 21 44 44 H 1.08002 * 119.99961 * 179.83466 * 24 23 22 45 45 H 1.08999 * 115.55033 * 154.39408 * 26 25 24 46 46 H 1.08999 * 117.49533 * 0.02562 * 27 26 25 47 47 H 1.08998 * 117.50225 * 145.01867 * 27 26 25 48 48 H 1.08999 * 117.49845 * 214.98288 * 28 26 25 49 49 H 1.08998 * 117.49879 * 0.02562 * 28 26 25 50 50 H 1.07997 * 120.00006 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0761 -1.2103 0.1736 9 7 1.3436 -2.3776 -0.2218 10 6 0.1536 -2.4223 -1.0863 11 6 0.3404 -3.5498 -2.1080 12 8 0.6711 -4.7585 -1.4201 13 6 1.9025 -4.7016 -0.6959 14 6 1.7957 -3.6333 0.3982 15 1 1.0757 -3.9502 1.1526 16 6 3.1646 -3.4230 1.0486 17 7 3.0598 -2.3932 2.0852 18 6 4.1486 -2.0399 2.7966 19 8 5.2151 -2.5749 2.5789 20 6 4.0407 -0.9809 3.8633 21 6 5.3890 -0.7738 4.5038 22 6 5.7495 -1.5178 5.6120 23 6 6.9876 -1.3306 6.1970 24 6 7.8624 -0.3937 5.6791 25 6 7.4999 0.3537 4.5744 26 6 8.4533 1.3754 4.0102 27 6 9.8770 1.3983 4.5701 28 6 8.8941 2.5148 4.9312 29 6 6.2630 0.1638 3.9868 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7321 -2.6178 -0.4818 32 1 0.0414 -1.4708 -1.6059 33 1 -0.5843 -3.6907 -2.6678 34 1 1.1461 -3.2893 -2.7944 35 1 2.7139 -4.4453 -1.3772 36 1 2.1017 -5.6713 -0.2397 37 1 3.8815 -3.1051 0.2916 38 1 3.5009 -4.3576 1.4975 39 1 2.2058 -1.9687 2.2624 40 1 3.7046 -0.0461 3.4145 41 1 3.3236 -1.2991 4.6199 42 1 5.0646 -2.2470 6.0189 43 1 7.2706 -1.9143 7.0605 44 1 8.8289 -0.2456 6.1379 45 1 8.3249 1.6045 2.9523 46 1 10.1241 0.6741 5.3463 47 1 10.6851 1.6427 3.8807 48 1 9.0559 3.4934 4.4792 49 1 8.4949 2.5253 5.9454 50 1 5.9798 0.7478 3.1236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717137751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:25 Heat of formation + Delta-G solvation = -21.181333 kcal Electronic energy + Delta-G solvation = -30420.313459 eV Core-core repulsion = 26413.285577 eV Total energy + Delta-G solvation = -4007.027882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.16193 -40.42247 -39.74830 -37.72746 -36.90142 -35.26937 -33.73408 -33.11991 -32.11729 -31.68804 -29.19657 -28.69412 -26.56112 -25.23982 -24.68273 -23.62936 -23.28924 -22.85975 -21.55980 -21.34714 -20.41012 -18.77243 -17.91214 -17.70818 -17.58897 -17.21088 -16.87688 -16.44070 -16.26978 -16.21089 -15.90722 -15.51481 -15.43596 -15.11765 -15.01745 -14.81422 -14.57077 -14.29676 -14.02347 -13.63545 -13.54781 -13.20451 -13.08864 -12.96751 -12.76203 -12.73370 -12.51061 -12.44047 -12.13144 -12.05336 -12.00599 -11.87126 -11.85274 -11.56026 -11.31630 -11.25623 -10.96321 -10.62501 -10.56950 -9.82826 -9.68579 -9.38814 -8.62242 -7.87107 -5.38242 0.39478 0.47199 1.39588 1.45970 1.50454 1.75256 2.34239 2.45259 2.75170 3.03274 3.15748 3.29163 3.44499 3.55676 3.74708 3.94182 3.99875 4.03739 4.08125 4.13793 4.17190 4.22120 4.25212 4.34989 4.39654 4.47167 4.51206 4.60537 4.61359 4.63893 4.65902 4.74994 4.76086 4.78462 4.94292 5.00142 5.08931 5.11279 5.14816 5.17666 5.23375 5.30449 5.55720 5.58808 5.64796 5.66250 5.69815 5.70528 6.11381 6.29142 6.37251 6.73498 7.10828 7.37517 7.76348 8.32764 9.17221 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.002979 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.891070 B = 9397.277788 C =10648.246630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.029 4.029 3 Si 0.942 3.058 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.039 0.961 16 C 0.143 3.857 17 N -0.697 5.697 18 C 0.511 3.489 19 O -0.587 6.587 20 C -0.101 4.101 21 C -0.067 4.067 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.059 4.059 26 C -0.143 4.143 27 C -0.165 4.165 28 C -0.160 4.160 29 C -0.127 4.127 30 H 0.250 0.750 31 H 0.008 0.992 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.118 0.882 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 -1.211 10.457 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.771 3.229 4 H -0.221 1.221 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.022 4.022 14 C 0.021 3.979 15 H 0.057 0.943 16 C 0.019 3.981 17 N -0.348 5.348 18 C 0.298 3.702 19 O -0.468 6.468 20 C -0.141 4.141 21 C -0.068 4.068 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.059 4.059 26 C -0.162 4.162 27 C -0.201 4.201 28 C -0.197 4.197 29 C -0.145 4.145 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.249 0.751 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.161 0.839 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.126 0.874 49 H 0.117 0.883 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.367 -1.614 10.293 16.171 hybrid contribution -0.402 1.660 -0.524 1.787 sum 11.965 0.046 9.769 15.446 Atomic orbital electron populations 1.70091 1.06092 1.25608 1.55344 1.25576 0.95704 1.00129 1.01202 0.85667 0.78404 0.81445 0.77356 1.22141 1.21837 1.19812 1.19273 0.91055 0.84001 1.42769 0.91448 1.44291 1.31788 1.03698 1.53315 1.21244 0.88170 0.96916 0.91327 1.23220 1.00472 0.85302 0.94204 1.87805 1.41036 1.35727 1.67006 1.22992 0.86067 0.99716 0.93376 1.21547 0.93860 0.88271 0.94268 0.94348 1.21066 0.96293 0.90955 0.89780 1.46037 1.12415 1.40487 1.35820 1.20795 0.83379 0.83379 0.82612 1.90639 1.29150 1.56936 1.70087 1.20693 0.96950 0.98880 0.97561 1.19406 0.95006 0.96432 0.95915 1.21214 0.97934 0.99140 0.95835 1.21394 0.93328 0.98142 1.00504 1.21256 1.00586 0.96561 0.96341 1.19281 0.93648 0.96947 0.95981 1.21054 0.96546 0.99708 0.98852 1.23175 0.91495 1.01750 1.03692 1.23095 1.02658 0.93906 1.00045 1.20893 0.94466 0.99251 0.99885 0.94047 0.97409 0.91625 0.87755 0.93959 0.93439 0.86463 0.93605 0.90410 0.75062 0.88234 0.85517 0.84840 0.83293 0.83878 0.88025 0.87447 0.87343 0.87445 0.88312 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.90 11.14 21.65 0.24 -49.65 16 2 C -0.03 -1.49 5.06 84.86 0.43 -1.06 16 3 Si 0.94 42.43 29.57 68.60 2.03 44.45 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.24 -11.76 7.06 84.03 0.59 -11.16 16 8 H 0.07 3.37 5.81 -2.91 -0.02 3.36 16 9 N -0.60 -27.39 3.03 -673.72 -2.04 -29.43 16 10 C 0.15 6.73 5.38 86.35 0.46 7.19 16 11 C 0.05 1.69 6.98 72.08 0.50 2.20 16 12 O -0.40 -14.53 10.74 -148.98 -1.60 -16.13 16 13 C 0.06 1.88 6.29 72.08 0.45 2.34 16 14 C 0.13 4.76 3.21 44.97 0.14 4.91 16 15 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.14 5.16 4.45 86.38 0.38 5.55 16 17 N -0.70 -25.46 3.76 -463.06 -1.74 -27.20 16 18 C 0.51 18.60 7.82 87.66 0.69 19.29 16 19 O -0.59 -24.97 16.03 -3.04 -0.05 -25.02 16 20 C -0.10 -3.03 5.83 29.10 0.17 -2.86 16 21 C -0.07 -2.01 4.37 -19.86 -0.09 -2.10 16 22 C -0.12 -3.18 9.70 22.27 0.22 -2.96 16 23 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.92 9.30 22.27 0.21 -2.72 16 25 C -0.06 -1.55 5.61 -19.87 -0.11 -1.66 16 26 C -0.14 -3.18 6.04 -11.54 -0.07 -3.25 16 27 C -0.16 -2.66 9.86 30.62 0.30 -2.36 16 28 C -0.16 -2.69 10.17 30.62 0.31 -2.38 16 29 C -0.13 -3.93 9.39 22.27 0.21 -3.72 16 30 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 3.31 6.33 -2.39 -0.02 3.30 16 33 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.05 1.84 7.57 -2.39 -0.02 1.82 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.41 15.64 7.33 -92.71 -0.68 14.96 16 40 H 0.10 3.03 8.09 -2.38 -0.02 3.01 16 41 H 0.13 3.00 8.08 -2.39 -0.02 2.98 16 42 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.14 2.41 6.02 -2.91 -0.02 2.39 16 45 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.11 1.52 6.18 -2.39 -0.01 1.50 16 47 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -63.68 399.61 2.13 -61.55 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.27 Total: 38.53 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.03 Total: 2.90 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.54 Total: -106.29 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.65 Total: -41.15 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -63.68 2.13 -61.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717137751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.368 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds