Wall clock time and date at job start Wed Apr 1 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48502 * 109.47066 * 240.00172 * 3 2 1 5 5 H 1.48502 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46888 * 120.00074 * 3 2 1 7 7 C 1.38813 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00111 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99633 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99843 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47093 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51864 * 304.89738 * 11 10 9 13 13 C 1.53305 * 109.51397 * 184.74515 * 11 10 9 14 14 N 1.47143 * 108.38392 * 187.77396 * 13 11 10 15 15 C 1.34779 * 120.98214 * 230.55507 * 14 13 11 16 16 O 1.21553 * 119.99915 * 356.19209 * 15 14 13 17 17 C 1.47849 * 120.00072 * 176.19290 * 15 14 13 18 18 C 1.39574 * 120.14725 * 48.86678 * 17 15 14 19 19 C 1.37955 * 119.85667 * 179.75038 * 18 17 15 20 20 C 1.38366 * 120.14153 * 0.52924 * 19 18 17 21 21 C 1.50696 * 119.85494 * 179.72334 * 20 19 18 22 22 C 1.53778 * 113.61567 * 37.52083 * 21 20 19 23 23 C 1.53781 * 87.08191 * 220.02180 * 22 21 20 24 24 C 1.53772 * 87.08103 * 25.43498 * 23 22 21 25 25 C 1.38357 * 120.29083 * 359.75038 * 20 19 18 26 26 C 1.37956 * 120.14893 * 359.97138 * 25 20 19 27 27 C 1.47153 * 118.03912 * 50.54163 * 14 13 11 28 28 C 1.53300 * 108.37835 * 309.46340 * 27 14 13 29 29 O 1.42953 * 109.22710 * 52.30165 * 28 27 14 30 30 H 0.97008 * 119.99613 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00406 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47369 * 59.99991 * 10 9 7 33 33 H 1.08997 * 109.47442 * 299.99924 * 10 9 7 34 34 H 1.08997 * 109.67728 * 307.50388 * 13 11 10 35 35 H 1.09004 * 109.67758 * 68.04937 * 13 11 10 36 36 H 1.08008 * 120.07012 * 0.02562 * 18 17 15 37 37 H 1.07993 * 119.93179 * 180.27855 * 19 18 17 38 38 H 1.08998 * 112.85284 * 168.82980 * 21 20 19 39 39 H 1.09007 * 113.61538 * 334.57120 * 22 21 20 40 40 H 1.08996 * 113.61725 * 105.47110 * 22 21 20 41 41 H 1.09000 * 113.61378 * 270.87968 * 23 22 21 42 42 H 1.09007 * 113.61198 * 139.98140 * 23 22 21 43 43 H 1.09006 * 113.61412 * 220.02055 * 24 23 22 44 44 H 1.09001 * 113.61990 * 89.12059 * 24 23 22 45 45 H 1.08008 * 119.92856 * 179.97438 * 25 20 19 46 46 H 1.07995 * 120.07966 * 180.02562 * 26 25 20 47 47 H 1.08990 * 109.68337 * 189.73825 * 27 14 13 48 48 H 1.09002 * 109.71030 * 69.19879 * 27 14 13 49 49 H 1.09000 * 109.50799 * 292.37208 * 28 27 14 50 50 H 1.09005 * 109.54967 * 172.25580 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.3805 -4.7143 0.8430 13 6 1.8253 -6.1447 0.1196 14 7 0.8702 -7.2478 -0.0700 15 6 0.8028 -8.2663 0.8101 16 8 1.5841 -8.3187 1.7398 17 6 -0.2213 -9.3198 0.6448 18 6 -0.4014 -9.9337 -0.5956 19 6 -1.3552 -10.9196 -0.7419 20 6 -2.1399 -11.2925 0.3351 21 6 -3.1841 -12.3658 0.1665 22 6 -2.7464 -13.5107 -0.7622 23 6 -4.1784 -13.4984 -1.3226 24 6 -4.2526 -12.0259 -0.8860 25 6 -1.9704 -10.6837 1.5659 26 6 -1.0162 -9.7005 1.7271 27 6 -0.0096 -7.2061 -1.2489 28 6 -0.6819 -5.8293 -1.3017 29 8 0.3200 -4.8128 -1.2209 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6845 -3.7146 0.8894 33 1 2.6845 -3.7146 -0.8905 34 1 2.5994 -6.1934 -0.6462 35 1 2.2803 -6.2187 1.1074 36 1 0.2077 -9.6407 -1.4381 37 1 -1.4926 -11.3986 -1.7000 38 1 -3.5987 -12.7058 1.1155 39 1 -1.9900 -13.2174 -1.4903 40 1 -2.4924 -14.4292 -0.2332 41 1 -4.8648 -14.1496 -0.7812 42 1 -4.2257 -13.6365 -2.4028 43 1 -5.2146 -11.7456 -0.4569 44 1 -3.9081 -11.3266 -1.6479 45 1 -2.5864 -10.9790 2.4025 46 1 -0.8846 -9.2264 2.6885 47 1 -0.7697 -7.9829 -1.1673 48 1 0.5793 -7.3620 -2.1528 49 1 -1.3714 -5.7285 -0.4636 50 1 -1.2300 -5.7268 -2.2384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717172738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:08 Heat of formation + Delta-G solvation = -11.700238 kcal Electronic energy + Delta-G solvation = -29636.082687 eV Core-core repulsion = 25629.465936 eV Total energy + Delta-G solvation = -4006.616751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.94353 -39.99530 -38.53904 -37.60445 -35.09569 -34.40061 -32.44804 -31.64093 -31.33748 -30.11253 -28.21754 -26.59986 -26.07886 -25.28062 -23.69575 -23.08314 -22.97374 -21.93402 -20.85894 -19.84410 -19.50440 -17.76425 -17.12767 -17.00241 -16.49053 -16.07123 -16.02196 -15.51868 -15.11954 -15.03606 -14.88718 -14.48529 -14.35790 -14.00772 -13.81839 -13.65028 -13.31838 -13.19550 -13.10610 -12.92048 -12.71779 -12.53905 -12.37505 -12.31000 -11.97185 -11.59883 -11.53688 -11.05089 -10.99300 -10.89693 -10.87380 -10.76524 -10.71614 -10.49051 -10.13051 -9.93775 -9.87720 -9.65998 -9.28704 -8.99856 -8.84479 -8.54686 -6.87548 -5.70995 -2.99725 0.64378 1.01536 2.49198 2.74038 3.36322 3.48073 3.51753 3.53189 3.95468 4.09901 4.11256 4.25585 4.27271 4.45981 4.51806 4.58170 4.60021 4.70632 4.74588 4.88924 5.00715 5.05936 5.09112 5.12835 5.21010 5.26781 5.29300 5.32009 5.39843 5.45366 5.49790 5.52781 5.61619 5.61907 5.65483 5.70058 5.71538 5.86396 5.90886 5.94863 5.97993 6.04845 6.23999 6.27219 6.30925 6.53097 6.57598 6.70936 7.18919 7.46610 7.73254 7.96262 8.47072 9.58648 10.15699 10.51623 11.51755 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.001941 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.172803 B =14423.038485 C =14920.052604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.086 3.914 14 N -0.606 5.606 15 C 0.560 3.440 16 O -0.534 6.534 17 C -0.127 4.127 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.052 4.052 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.119 4.119 26 C -0.066 4.066 27 C 0.063 3.937 28 C 0.046 3.954 29 O -0.357 6.357 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -30.332 -3.090 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.339 5.339 15 C 0.349 3.651 16 O -0.411 6.411 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.140 4.140 20 C -0.052 4.052 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.168 4.168 25 C -0.137 4.137 26 C -0.084 4.084 27 C -0.060 4.060 28 C -0.032 4.032 29 O -0.275 6.275 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.117 0.883 48 H 0.098 0.902 49 H 0.072 0.928 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.170 -30.084 -2.740 31.294 hybrid contribution 0.071 0.752 0.144 0.769 sum -8.099 -29.332 -2.596 30.540 Atomic orbital electron populations 1.69670 1.05116 1.25668 1.57639 1.24747 0.95535 0.97681 1.03038 0.86243 0.78479 0.83479 0.77830 1.21266 1.21721 1.21284 1.19188 0.91005 0.84091 1.42811 0.91166 1.42216 1.05996 0.99474 1.89373 1.20619 0.92393 0.84626 0.98852 1.22808 0.94163 0.94157 0.87368 0.91832 1.22383 0.91682 0.85258 1.04367 1.48082 1.38358 1.22642 1.24852 1.18408 0.83758 0.81327 0.81622 1.90796 1.41950 1.76371 1.31948 1.19863 0.98755 0.99213 0.95145 1.21312 0.97671 0.95765 0.95961 1.20915 0.96339 0.97745 0.98987 1.19919 0.95841 0.96154 0.93322 1.21621 0.94852 0.94204 0.98963 1.23050 0.97211 0.98206 0.98752 1.22843 0.97140 0.96941 1.01200 1.22993 0.98690 0.96993 0.98148 1.21014 0.98667 0.96791 0.97258 1.21166 0.93579 0.95787 0.97903 1.22821 0.94765 1.00219 0.88223 1.22920 0.90920 0.86435 1.02958 1.88157 1.49449 1.52018 1.37912 0.93522 0.77916 0.94625 0.95228 0.90243 0.87960 0.85197 0.85370 0.88311 0.89597 0.91224 0.90091 0.91234 0.91149 0.89682 0.85398 0.85159 0.88263 0.90246 0.92818 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.16 5.55 -59.91 -0.33 -19.49 16 10 C 0.16 3.41 5.93 -4.04 -0.02 3.38 16 11 C 0.07 1.29 2.81 -26.57 -0.07 1.22 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C 0.09 1.27 5.91 -3.53 -0.02 1.25 16 14 N -0.61 -8.08 3.02 -173.39 -0.52 -8.60 16 15 C 0.56 7.95 7.27 -12.33 -0.09 7.86 16 16 O -0.53 -9.42 16.52 5.32 0.09 -9.33 16 17 C -0.13 -1.43 5.05 -104.97 -0.53 -1.96 16 18 C -0.09 -0.77 7.38 -39.19 -0.29 -1.06 16 19 C -0.12 -0.89 8.58 -39.64 -0.34 -1.23 16 20 C -0.05 -0.39 5.30 -104.53 -0.55 -0.94 16 21 C -0.08 -0.44 3.98 -90.96 -0.36 -0.80 16 22 C -0.13 -0.66 7.45 -25.92 -0.19 -0.85 16 23 C -0.14 -0.63 8.08 -25.92 -0.21 -0.83 16 24 C -0.13 -0.66 7.54 -25.92 -0.20 -0.86 16 25 C -0.12 -0.98 9.69 -39.64 -0.38 -1.37 16 26 C -0.07 -0.68 9.73 -39.18 -0.38 -1.06 16 27 C 0.06 0.66 5.43 -3.53 -0.02 0.64 16 28 C 0.05 0.58 6.98 37.31 0.26 0.84 16 29 O -0.36 -6.29 10.33 -35.23 -0.36 -6.66 16 30 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.39 10.85 7.67 -40.82 -0.31 10.53 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.58 7.11 -51.93 -0.37 1.21 16 36 H 0.13 0.97 6.93 -52.48 -0.36 0.61 16 37 H 0.13 0.68 6.64 -52.49 -0.35 0.33 16 38 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.09 0.41 6.30 -51.93 -0.33 0.08 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.44 7.72 -51.93 -0.40 0.04 16 45 H 0.13 0.80 8.05 -52.48 -0.42 0.38 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.10 0.86 4.69 -51.93 -0.24 0.61 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -34.68 398.91 -10.90 -45.58 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.83 Total: 6.16 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.65 Total: -3.33 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.13 Total: -56.23 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.28 Total: -15.99 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.68 -10.90 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717172738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.876 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds