Wall clock time and date at job start Wed Apr 1 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48502 * 109.47066 * 240.00172 * 3 2 1 5 5 H 1.48502 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46888 * 120.00074 * 3 2 1 7 7 C 1.38813 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00111 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99633 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99843 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47093 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51864 * 304.89738 * 11 10 9 13 13 C 1.53305 * 109.51397 * 184.74515 * 11 10 9 14 14 N 1.47143 * 108.38392 * 187.77396 * 13 11 10 15 15 C 1.34779 * 120.98214 * 230.55507 * 14 13 11 16 16 O 1.21553 * 119.99915 * 356.19209 * 15 14 13 17 17 C 1.47849 * 120.00072 * 176.19290 * 15 14 13 18 18 C 1.39574 * 120.14725 * 48.86678 * 17 15 14 19 19 C 1.37955 * 119.85667 * 179.75038 * 18 17 15 20 20 C 1.38366 * 120.14153 * 0.52924 * 19 18 17 21 21 C 1.50696 * 119.85494 * 179.72334 * 20 19 18 22 22 C 1.53778 * 113.61567 * 37.52083 * 21 20 19 23 23 C 1.53781 * 87.08191 * 220.02180 * 22 21 20 24 24 C 1.53772 * 87.08103 * 25.43498 * 23 22 21 25 25 C 1.38357 * 120.29083 * 359.75038 * 20 19 18 26 26 C 1.37956 * 120.14893 * 359.97138 * 25 20 19 27 27 C 1.47153 * 118.03912 * 50.54163 * 14 13 11 28 28 C 1.53300 * 108.37835 * 309.46340 * 27 14 13 29 29 O 1.42953 * 109.22710 * 52.30165 * 28 27 14 30 30 H 0.97008 * 119.99613 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00406 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47369 * 59.99991 * 10 9 7 33 33 H 1.08997 * 109.47442 * 299.99924 * 10 9 7 34 34 H 1.08997 * 109.67728 * 307.50388 * 13 11 10 35 35 H 1.09004 * 109.67758 * 68.04937 * 13 11 10 36 36 H 1.08008 * 120.07012 * 0.02562 * 18 17 15 37 37 H 1.07993 * 119.93179 * 180.27855 * 19 18 17 38 38 H 1.08998 * 112.85284 * 168.82980 * 21 20 19 39 39 H 1.09007 * 113.61538 * 334.57120 * 22 21 20 40 40 H 1.08996 * 113.61725 * 105.47110 * 22 21 20 41 41 H 1.09000 * 113.61378 * 270.87968 * 23 22 21 42 42 H 1.09007 * 113.61198 * 139.98140 * 23 22 21 43 43 H 1.09006 * 113.61412 * 220.02055 * 24 23 22 44 44 H 1.09001 * 113.61990 * 89.12059 * 24 23 22 45 45 H 1.08008 * 119.92856 * 179.97438 * 25 20 19 46 46 H 1.07995 * 120.07966 * 180.02562 * 26 25 20 47 47 H 1.08990 * 109.68337 * 189.73825 * 27 14 13 48 48 H 1.09002 * 109.71030 * 69.19879 * 27 14 13 49 49 H 1.09000 * 109.50799 * 292.37208 * 28 27 14 50 50 H 1.09005 * 109.54967 * 172.25580 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.3805 -4.7143 0.8430 13 6 1.8253 -6.1447 0.1196 14 7 0.8702 -7.2478 -0.0700 15 6 0.8028 -8.2663 0.8101 16 8 1.5841 -8.3187 1.7398 17 6 -0.2213 -9.3198 0.6448 18 6 -0.4014 -9.9337 -0.5956 19 6 -1.3552 -10.9196 -0.7419 20 6 -2.1399 -11.2925 0.3351 21 6 -3.1841 -12.3658 0.1665 22 6 -2.7464 -13.5107 -0.7622 23 6 -4.1784 -13.4984 -1.3226 24 6 -4.2526 -12.0259 -0.8860 25 6 -1.9704 -10.6837 1.5659 26 6 -1.0162 -9.7005 1.7271 27 6 -0.0096 -7.2061 -1.2489 28 6 -0.6819 -5.8293 -1.3017 29 8 0.3200 -4.8128 -1.2209 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6845 -3.7146 0.8894 33 1 2.6845 -3.7146 -0.8905 34 1 2.5994 -6.1934 -0.6462 35 1 2.2803 -6.2187 1.1074 36 1 0.2077 -9.6407 -1.4381 37 1 -1.4926 -11.3986 -1.7000 38 1 -3.5987 -12.7058 1.1155 39 1 -1.9900 -13.2174 -1.4903 40 1 -2.4924 -14.4292 -0.2332 41 1 -4.8648 -14.1496 -0.7812 42 1 -4.2257 -13.6365 -2.4028 43 1 -5.2146 -11.7456 -0.4569 44 1 -3.9081 -11.3266 -1.6479 45 1 -2.5864 -10.9790 2.4025 46 1 -0.8846 -9.2264 2.6885 47 1 -0.7697 -7.9829 -1.1673 48 1 0.5793 -7.3620 -2.1528 49 1 -1.3714 -5.7285 -0.4636 50 1 -1.2300 -5.7268 -2.2384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717172738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:06 Heat of formation + Delta-G solvation = -32.914887 kcal Electronic energy + Delta-G solvation = -29637.002623 eV Core-core repulsion = 25629.465936 eV Total energy + Delta-G solvation = -4007.536687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.86564 -40.72188 -39.61886 -38.33907 -36.70527 -35.84647 -34.00784 -32.68426 -32.00692 -31.66411 -29.41908 -27.75552 -26.44339 -26.40512 -25.02879 -24.28519 -23.74119 -23.05580 -22.16740 -20.74738 -20.00060 -19.25763 -18.64149 -17.97566 -17.51071 -17.18432 -16.78923 -16.66990 -16.36058 -16.00952 -15.90984 -15.71491 -15.40015 -15.12648 -15.03953 -14.53064 -14.45979 -14.38110 -14.14943 -13.96469 -13.85276 -13.44545 -13.28518 -13.11727 -12.90119 -12.77840 -12.70645 -12.61959 -12.31261 -12.13671 -12.10082 -11.88588 -11.70813 -11.46247 -11.29612 -11.26891 -11.12694 -10.96156 -10.92176 -9.95216 -9.80020 -9.58052 -9.02207 -7.94485 -5.24418 -0.08739 0.36149 1.44788 1.47655 1.51572 1.57502 1.73444 2.56253 2.65060 2.72565 3.28220 3.39119 3.51797 3.68665 3.72539 3.83184 3.89035 3.90077 3.94493 3.97957 4.03100 4.11008 4.12372 4.22990 4.29269 4.37796 4.41332 4.43793 4.48511 4.60980 4.69210 4.79811 4.81104 4.81700 4.91947 4.92462 4.93341 5.03597 5.05974 5.15453 5.15782 5.18082 5.27252 5.29527 5.35373 5.47695 5.54131 5.71847 5.89102 6.14749 6.19229 6.26502 6.88351 7.32608 8.05870 8.30978 9.29029 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.001941 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.172803 B =14423.038485 C =14920.052604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.161 3.839 11 C 0.088 3.912 12 H 0.045 0.955 13 C 0.095 3.905 14 N -0.606 5.606 15 C 0.558 3.442 16 O -0.579 6.579 17 C -0.149 4.149 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.047 4.047 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.082 4.082 27 C 0.069 3.931 28 C 0.038 3.962 29 O -0.385 6.385 30 H 0.252 0.748 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.046 0.954 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -32.296 -4.728 33.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.034 3.966 11 C 0.029 3.971 12 H 0.063 0.937 13 C -0.028 4.028 14 N -0.338 5.338 15 C 0.349 3.651 16 O -0.459 6.459 17 C -0.152 4.152 18 C -0.104 4.104 19 C -0.134 4.134 20 C -0.047 4.047 21 C -0.099 4.099 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.169 4.169 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.053 4.053 28 C -0.039 4.039 29 O -0.304 6.304 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.141 0.859 48 H 0.119 0.881 49 H 0.064 0.936 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.562 -32.087 -4.402 33.500 hybrid contribution 0.126 1.241 0.639 1.401 sum -8.436 -30.846 -3.763 32.200 Atomic orbital electron populations 1.69841 1.06733 1.26178 1.59273 1.25644 0.96475 1.01316 1.03503 0.85134 0.77133 0.78738 0.78260 1.20230 1.22055 1.20288 1.19644 0.91629 0.85207 1.41630 0.90335 1.42405 1.05629 1.00839 1.89425 1.20759 0.93039 0.83830 0.99021 1.22455 0.93379 0.94165 0.87062 0.93660 1.22136 0.91882 0.84556 1.04265 1.48162 1.38254 1.21825 1.25578 1.18930 0.83677 0.81779 0.80721 1.90760 1.43816 1.77614 1.33761 1.19733 0.99046 0.99628 0.96754 1.21467 0.98010 0.95709 0.95223 1.21206 0.95267 0.96903 1.00032 1.20218 0.95734 0.95863 0.92873 1.21719 0.94593 0.93939 0.99688 1.23077 0.97670 0.97867 0.98592 1.22834 0.96825 0.96437 1.01603 1.23010 0.98426 0.97548 0.97882 1.21216 0.98185 0.96085 0.98457 1.21203 0.94657 0.96830 0.97414 1.22978 0.95109 0.99423 0.87781 1.23222 0.90093 0.86515 1.04039 1.88097 1.50584 1.54235 1.37440 0.93981 0.79391 0.93879 0.94872 0.88922 0.89046 0.83633 0.82778 0.87725 0.89205 0.91071 0.89649 0.90705 0.91111 0.89592 0.83724 0.86417 0.85853 0.88140 0.93595 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.89 5.55 -343.46 -1.91 -41.80 16 10 C 0.16 6.79 5.93 86.38 0.51 7.30 16 11 C 0.09 3.15 2.81 30.70 0.09 3.23 16 12 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 13 C 0.09 2.83 5.91 86.36 0.51 3.34 16 14 N -0.61 -15.85 3.02 -820.75 -2.48 -18.33 16 15 C 0.56 15.98 7.27 86.79 0.63 16.61 16 16 O -0.58 -21.26 16.52 -3.88 -0.06 -21.32 16 17 C -0.15 -3.25 5.05 -20.09 -0.10 -3.36 16 18 C -0.09 -1.30 7.38 22.53 0.17 -1.13 16 19 C -0.12 -1.35 8.58 22.23 0.19 -1.15 16 20 C -0.05 -0.58 5.30 -19.81 -0.10 -0.68 16 21 C -0.08 -0.69 3.98 -11.01 -0.04 -0.73 16 22 C -0.13 -0.93 7.45 31.12 0.23 -0.69 16 23 C -0.14 -0.82 8.08 31.12 0.25 -0.57 16 24 C -0.13 -0.96 7.54 31.12 0.23 -0.73 16 25 C -0.12 -1.85 9.69 22.23 0.22 -1.63 16 26 C -0.08 -1.70 9.73 22.53 0.22 -1.48 16 27 C 0.07 1.32 5.43 86.36 0.47 1.79 16 28 C 0.04 0.94 6.98 72.08 0.50 1.44 16 29 O -0.38 -13.51 10.33 -148.98 -1.54 -15.05 16 30 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.37 21.69 7.67 -92.71 -0.71 20.98 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.09 2.93 7.11 -2.38 -0.02 2.91 16 36 H 0.15 1.70 6.93 -2.91 -0.02 1.68 16 37 H 0.15 0.99 6.64 -2.91 -0.02 0.97 16 38 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 39 H 0.09 0.55 6.30 -2.38 -0.02 0.53 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.09 0.63 7.72 -2.39 -0.02 0.61 16 45 H 0.15 1.61 8.05 -2.91 -0.02 1.59 16 46 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.12 1.80 4.69 -2.39 -0.01 1.79 16 48 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -76.35 398.91 1.84 -74.51 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.24 Total: 29.87 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.28 Total: 3.81 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.10 Total: -121.04 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.60 Total: -36.37 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -76.35 1.84 -74.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717172738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.594 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds