Wall clock time and date at job start Wed Apr 1 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47229 * 85.02406 * 3 2 1 5 5 H 1.48503 * 109.46902 * 205.02047 * 3 2 1 6 6 H 1.48495 * 109.47086 * 325.01428 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.41624 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41318 * 7 2 1 10 10 C 1.47213 * 135.97368 * 6.11811 * 9 7 2 11 11 C 1.52977 * 87.69448 * 153.61366 * 10 9 7 12 12 C 1.47212 * 135.97634 * 186.48128 * 9 7 2 13 13 C 1.53658 * 115.11773 * 140.89856 * 11 10 9 14 14 C 1.55487 * 101.96709 * 111.47494 * 13 11 10 15 15 H 1.08997 * 111.14351 * 275.53151 * 14 13 11 16 16 N 1.46507 * 111.10468 * 151.43201 * 14 13 11 17 17 C 1.34776 * 119.99760 * 161.88469 * 16 14 13 18 18 O 1.21281 * 120.00126 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99668 * 179.97438 * 17 16 14 20 20 C 1.52995 * 109.46992 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47233 * 180.02562 * 20 19 17 22 22 C 1.50700 * 109.47373 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.00022 * 269.72255 * 22 21 20 24 24 C 1.38229 * 120.00199 * 179.76401 * 23 22 21 25 25 C 1.38239 * 120.00083 * 0.50910 * 24 23 22 26 26 C 1.38234 * 119.99529 * 359.74764 * 25 24 23 27 27 C 1.38227 * 120.00324 * 359.97438 * 26 25 24 28 28 C 1.55018 * 101.04453 * 33.48888 * 14 13 11 29 29 O 1.42394 * 116.32169 * 269.47456 * 11 10 9 30 30 H 0.96996 * 119.99453 * 359.97438 * 1 2 3 31 31 H 1.09006 * 113.49648 * 268.29397 * 10 9 7 32 32 H 1.09004 * 113.49844 * 38.82835 * 10 9 7 33 33 H 1.09001 * 113.50018 * 321.17387 * 12 9 7 34 34 H 1.09000 * 113.50073 * 91.64022 * 12 9 7 35 35 H 1.08999 * 110.92919 * 229.64715 * 13 11 10 36 36 H 1.09002 * 110.93072 * 353.30768 * 13 11 10 37 37 H 0.96999 * 119.99435 * 341.89070 * 16 14 13 38 38 H 1.08995 * 109.47739 * 300.00371 * 19 17 16 39 39 H 1.09001 * 109.46698 * 60.00903 * 19 17 16 40 40 H 1.09005 * 109.47483 * 300.00265 * 20 19 17 41 41 H 1.09000 * 109.47028 * 60.00392 * 20 19 17 42 42 H 1.09004 * 109.47100 * 300.00166 * 21 20 19 43 43 H 1.09000 * 109.47321 * 59.99925 * 21 20 19 44 44 H 1.08007 * 119.99706 * 359.97438 * 23 22 21 45 45 H 1.08002 * 119.99972 * 180.23238 * 24 23 22 46 46 H 1.08001 * 119.99987 * 179.72132 * 25 24 23 47 47 H 1.08006 * 119.99842 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00294 * 179.97438 * 27 26 25 49 49 H 1.09002 * 110.29986 * 205.04598 * 28 14 13 50 50 H 1.09000 * 110.38145 * 82.94271 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1071 1.3947 5 1 3.5965 1.4119 -0.5922 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3319 -2.3844 -0.1314 10 6 -0.0600 -2.7820 -0.3988 11 6 0.4896 -4.0826 -0.9873 12 6 1.6740 -3.8145 -0.0616 13 6 -0.3266 -5.3427 -0.6600 14 6 -0.9145 -5.7162 -2.0501 15 1 -1.8291 -5.1590 -2.2527 16 7 -1.1455 -7.1591 -2.1548 17 6 -1.9697 -7.6424 -3.1054 18 8 -2.5199 -6.8828 -3.8743 19 6 -2.2069 -9.1267 -3.2135 20 6 -3.1742 -9.4060 -4.3654 21 6 -3.4155 -10.9129 -4.4748 22 6 -4.3678 -11.1881 -5.6098 23 6 -5.7296 -11.2266 -5.3756 24 6 -6.6034 -11.4742 -6.4176 25 6 -6.1149 -11.6938 -7.6920 26 6 -4.7528 -11.6606 -7.9252 27 6 -3.8793 -11.4073 -6.8843 28 6 0.2335 -5.2650 -2.9890 29 8 0.7701 -4.0751 -2.3833 30 1 -0.4849 0.8401 0.0004 31 1 -0.6511 -2.9296 0.5051 32 1 -0.5598 -2.1485 -1.1317 33 1 2.6386 -4.0531 -0.5097 34 1 1.5543 -4.2420 0.9339 35 1 0.3179 -6.1371 -0.2835 36 1 -1.1213 -5.1181 0.0514 37 1 -0.7052 -7.7666 -1.5400 38 1 -1.2605 -9.6330 -3.4033 39 1 -2.6354 -9.4949 -2.2813 40 1 -4.1207 -8.8997 -4.1760 41 1 -2.7453 -9.0378 -5.2974 42 1 -2.4691 -11.4196 -4.6640 43 1 -3.8445 -11.2808 -3.5427 44 1 -6.1110 -11.0598 -4.3790 45 1 -7.6676 -11.5005 -6.2353 46 1 -6.7974 -11.8918 -8.5053 47 1 -4.3711 -11.8326 -8.9208 48 1 -2.8151 -11.3818 -7.0665 49 1 -0.1560 -5.0413 -3.9821 50 1 1.0003 -6.0374 -3.0493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717232644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:57 Heat of formation + Delta-G solvation = -28.716322 kcal Electronic energy + Delta-G solvation = -28629.067579 eV Core-core repulsion = 24621.712956 eV Total energy + Delta-G solvation = -4007.354624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.63716 -40.55536 -40.04346 -37.95015 -35.91262 -35.57114 -34.20826 -32.48783 -31.72530 -31.47355 -29.89480 -27.83025 -27.30012 -26.55569 -24.27701 -23.65189 -23.42452 -22.39690 -21.67866 -21.33019 -20.59327 -18.78235 -18.21684 -17.67380 -17.42418 -17.11139 -16.83399 -16.40091 -16.32883 -16.01434 -15.95504 -15.54523 -15.17949 -15.07476 -14.76557 -14.59804 -14.42169 -14.31610 -14.18406 -13.73912 -13.56612 -13.43705 -13.13297 -12.88734 -12.84734 -12.77938 -12.68199 -12.55351 -12.40211 -12.26465 -11.92268 -11.76597 -11.72537 -11.66130 -11.49428 -11.35552 -10.91896 -10.86708 -10.31694 -10.06446 -9.78407 -9.54593 -8.95055 -7.94453 -5.25257 0.49097 0.53772 1.42565 1.46020 1.55098 1.67555 2.08734 2.46219 2.81772 2.92466 3.27856 3.33180 3.58496 3.60472 3.76342 3.81205 3.85468 3.98215 4.07345 4.17853 4.19195 4.22054 4.29441 4.37554 4.59033 4.62448 4.65224 4.68369 4.70637 4.74851 4.80741 4.83125 4.85712 4.88617 4.91875 4.93457 5.01665 5.15653 5.15765 5.19519 5.23744 5.27936 5.41826 5.46368 5.50134 5.61920 5.66641 5.78366 5.89253 6.18103 6.28765 6.60616 6.88016 7.32238 7.57826 8.58901 9.25266 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.001523 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.803505 B =18380.737461 C =18665.526549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.982 3.018 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.085 0.915 9 N -0.640 5.640 10 C 0.153 3.847 11 C 0.076 3.924 12 C 0.114 3.886 13 C -0.123 4.123 14 C 0.124 3.876 15 H 0.077 0.923 16 N -0.702 5.702 17 C 0.505 3.495 18 O -0.590 6.590 19 C -0.128 4.128 20 C -0.095 4.095 21 C -0.073 4.073 22 C -0.093 4.093 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.133 4.133 28 C 0.039 3.961 29 O -0.373 6.373 30 H 0.248 0.752 31 H 0.042 0.958 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.423 0.577 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.071 0.929 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 -32.517 -8.004 34.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.810 3.190 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.222 1.222 7 C -0.357 4.357 8 H 0.103 0.897 9 N -0.365 5.365 10 C 0.027 3.973 11 C 0.035 3.965 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.017 3.983 15 H 0.095 0.905 16 N -0.356 5.356 17 C 0.294 3.706 18 O -0.470 6.470 19 C -0.168 4.168 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.093 4.093 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.039 4.039 29 O -0.291 6.291 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.262 0.738 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.150 0.850 49 H 0.089 0.911 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.580 -31.471 -8.623 33.740 hybrid contribution 0.144 1.394 0.124 1.407 sum -8.436 -30.077 -8.500 32.374 Atomic orbital electron populations 1.70036 1.06650 1.25677 1.58153 1.25711 0.96597 1.01168 1.02915 0.85009 0.77726 0.78792 0.77509 1.20775 1.19209 1.22207 1.19341 0.91009 0.83078 1.42250 0.89710 1.45875 1.06598 1.00871 1.83199 1.22364 0.88081 0.91234 0.95658 1.23035 0.96460 0.95106 0.81944 1.22897 0.96996 0.84183 0.97038 1.23043 1.00215 0.96596 0.96266 1.22326 0.97844 0.82990 0.95134 0.90460 1.45734 1.48030 1.06401 1.35436 1.21624 0.77138 0.92718 0.79095 1.90739 1.50931 1.61578 1.43747 1.21735 1.03462 0.89230 1.02324 1.21227 0.98834 0.95482 0.97743 1.20623 0.98803 0.95077 0.96542 1.20178 0.94721 0.98786 0.95601 1.21350 0.93191 1.00516 1.00010 1.21453 1.00617 0.99659 0.93248 1.21446 0.96009 1.00683 0.97629 1.21450 0.93834 0.99874 0.99818 1.21348 1.00590 1.00366 0.92765 1.23927 0.95490 0.87560 0.96911 1.88424 1.78065 1.42385 1.20248 0.94312 0.93998 0.96377 0.93199 0.90867 0.85837 0.88164 0.73805 0.85602 0.85608 0.93243 0.93219 0.89182 0.89173 0.85010 0.84751 0.84733 0.84755 0.85021 0.91077 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.96 11.82 21.65 0.26 -60.71 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.98 47.88 29.56 68.60 2.03 49.91 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 7 C -0.23 -13.57 10.73 84.04 0.90 -12.67 16 8 H 0.09 4.78 7.84 -2.91 -0.02 4.76 16 9 N -0.64 -34.71 3.77 -739.06 -2.79 -37.50 16 10 C 0.15 7.61 6.70 83.47 0.56 8.17 16 11 C 0.08 2.86 1.75 -10.68 -0.02 2.84 16 12 C 0.11 4.60 8.20 83.38 0.68 5.28 16 13 C -0.12 -2.95 6.03 31.67 0.19 -2.76 16 14 C 0.12 3.10 3.37 46.54 0.16 3.25 16 15 H 0.08 2.42 7.74 -2.39 -0.02 2.40 16 16 N -0.70 -11.34 5.24 -435.23 -2.28 -13.62 16 17 C 0.51 9.81 7.83 87.66 0.69 10.50 16 18 O -0.59 -18.33 15.73 -3.03 -0.05 -18.37 16 19 C -0.13 -1.19 5.70 29.85 0.17 -1.02 16 20 C -0.09 -1.31 4.49 30.59 0.14 -1.18 16 21 C -0.07 -0.69 5.35 29.85 0.16 -0.53 16 22 C -0.09 -1.32 5.13 -19.87 -0.10 -1.42 16 23 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 25 C -0.14 -1.94 10.05 22.27 0.22 -1.71 16 26 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 27 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16 28 C 0.04 1.15 7.49 72.67 0.54 1.70 16 29 O -0.37 -15.27 11.18 -148.98 -1.67 -16.93 16 30 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.04 2.04 7.95 -2.38 -0.02 2.02 16 32 H 0.02 1.04 7.60 -2.38 -0.02 1.03 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 35 H 0.12 1.97 7.96 -2.39 -0.02 1.95 16 36 H 0.10 2.30 7.81 -2.39 -0.02 2.28 16 37 H 0.42 3.22 8.51 -92.71 -0.79 2.44 16 38 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 41 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 42 H 0.09 0.57 8.09 -2.38 -0.02 0.55 16 43 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 44 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 46 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -85.62 411.64 1.28 -84.34 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.13 Total: 12.91 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.64 Total: -0.03 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.81 Total: -111.83 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.71 Total: -35.31 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -85.62 1.28 -84.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717232644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.625 kcal (2) G-P(sol) polarization free energy of solvation -85.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds