Wall clock time and date at job start Wed Apr 1 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00095 * 2 1 4 4 H 1.48498 * 109.47170 * 239.99573 * 3 2 1 5 5 H 1.48494 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46918 * 119.99608 * 3 2 1 7 7 C 1.38810 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00227 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47502 * 179.97438 * 10 9 7 12 12 O 1.42902 * 109.45861 * 299.99777 * 11 10 9 13 13 C 1.53042 * 109.45903 * 59.96954 * 11 10 9 14 14 C 1.53161 * 109.32656 * 181.38477 * 13 11 10 15 15 N 1.46929 * 108.77293 * 305.36182 * 14 13 11 16 16 C 1.34773 * 120.62815 * 233.63354 * 15 14 13 17 17 O 1.21279 * 119.99845 * 175.62767 * 16 15 14 18 18 C 1.50701 * 120.00381 * 355.62317 * 16 15 14 19 19 C 1.50698 * 115.55319 * 280.60707 * 18 16 15 20 20 C 1.38231 * 120.00127 * 150.18419 * 19 18 16 21 21 C 1.38237 * 120.00085 * 179.76696 * 20 19 18 22 22 C 1.38237 * 119.99613 * 0.50519 * 21 20 19 23 23 C 1.38232 * 119.99989 * 359.74147 * 22 21 20 24 24 C 1.38231 * 119.99796 * 330.45041 * 19 18 16 25 25 C 1.53001 * 117.49722 * 134.89013 * 18 16 15 26 26 C 1.52998 * 60.00144 * 252.51318 * 25 18 16 27 27 C 1.46924 * 118.73898 * 53.60460 * 15 14 13 28 28 C 1.53040 * 109.46362 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00393 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00370 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.46944 * 59.99686 * 10 9 7 32 32 H 1.08995 * 109.47382 * 300.00213 * 10 9 7 33 33 H 0.96702 * 113.99801 * 60.00281 * 12 11 10 34 34 H 1.08999 * 109.49928 * 301.32499 * 13 11 10 35 35 H 1.08998 * 109.49238 * 61.42642 * 13 11 10 36 36 H 1.08996 * 109.59198 * 185.57102 * 14 13 11 37 37 H 1.09002 * 109.70507 * 65.21438 * 14 13 11 38 38 H 1.07998 * 120.00061 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.00422 * 180.22582 * 21 20 19 40 40 H 1.07997 * 119.99787 * 179.73044 * 22 21 20 41 41 H 1.08004 * 120.00054 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.00150 * 0.02562 * 24 19 18 43 43 H 1.08997 * 117.50436 * 0.02562 * 25 18 16 44 44 H 1.09001 * 117.49672 * 145.02737 * 25 18 16 45 45 H 1.08996 * 117.50223 * 252.51053 * 26 25 18 46 46 H 1.09006 * 117.49702 * 107.49040 * 26 25 18 47 47 H 1.09003 * 109.58474 * 186.60687 * 27 15 14 48 48 H 1.09000 * 109.70064 * 66.25230 * 27 15 14 49 49 H 1.08998 * 109.49654 * 298.58075 * 28 11 10 50 50 H 1.09004 * 109.49658 * 58.67294 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 8 0.2429 -4.7436 1.1684 13 6 0.1831 -4.7383 -1.2478 14 6 -0.8336 -5.8836 -1.2267 15 7 -0.1111 -7.1545 -1.0799 16 6 -0.3086 -8.1615 -1.9536 17 8 0.3510 -9.1757 -1.8691 18 6 -1.3490 -8.0273 -3.0356 19 6 -2.7720 -8.2690 -2.6026 20 6 -3.8096 -7.6195 -3.2447 21 6 -5.1154 -7.8449 -2.8506 22 6 -5.3826 -8.7118 -1.8076 23 6 -4.3446 -9.3574 -1.1622 24 6 -3.0393 -9.1359 -1.5596 25 6 -0.9572 -8.4599 -4.4499 26 6 -1.1095 -6.9739 -4.1191 27 6 0.8311 -7.3065 0.0372 28 6 1.8292 -6.1450 0.0018 29 1 -0.4851 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6847 -3.7145 0.8906 32 1 2.6846 -3.7146 -0.8894 33 1 -0.2721 -3.9277 1.2345 34 1 -0.3442 -3.7843 -1.2596 35 1 0.8062 -4.8212 -2.1382 36 1 -1.3971 -5.8893 -2.1597 37 1 -1.5171 -5.7529 -0.3878 38 1 -3.6005 -6.9385 -4.0564 39 1 -5.9263 -7.3403 -3.3547 40 1 -6.4024 -8.8846 -1.4969 41 1 -4.5534 -10.0344 -0.3470 42 1 -2.2282 -9.6398 -1.0548 43 1 0.0529 -8.8419 -4.5978 44 1 -1.7288 -8.9196 -5.0675 45 1 -1.9813 -6.4560 -4.5189 46 1 -0.1995 -6.3779 -4.0493 47 1 1.3660 -8.2511 -0.0620 48 1 0.2869 -7.2922 0.9815 49 1 2.4367 -6.2146 -0.9004 50 1 2.4738 -6.1923 0.8796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717325101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:20 Heat of formation + Delta-G solvation = -16.072000 kcal Electronic energy + Delta-G solvation = -31153.925075 eV Core-core repulsion = 27147.118750 eV Total energy + Delta-G solvation = -4006.806325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.00570 -39.44664 -38.41572 -36.62583 -35.49904 -34.01536 -31.96387 -31.24345 -31.11092 -30.77057 -30.32323 -26.96983 -25.11130 -23.72199 -23.47102 -22.96727 -22.58355 -22.03925 -21.10930 -20.01170 -18.73664 -17.74995 -17.51797 -16.77799 -16.10629 -15.84642 -15.44579 -15.05379 -14.98402 -14.90478 -14.55388 -14.35309 -14.13045 -14.09930 -13.66405 -13.30479 -13.14977 -13.10521 -12.97858 -12.77130 -12.58186 -12.29603 -11.92964 -11.86856 -11.60154 -11.54528 -11.32004 -11.13208 -11.05694 -11.01099 -10.90486 -10.84492 -10.75706 -10.32631 -10.17917 -9.75538 -9.67047 -9.40301 -9.13207 -8.96558 -8.81286 -8.54760 -7.03645 -5.86018 -3.15069 1.07859 1.19275 2.50139 2.88522 3.31851 3.39378 3.44222 3.44798 3.76843 4.21410 4.27807 4.49984 4.53952 4.56163 4.63411 4.78717 4.81989 4.88985 4.93705 4.99015 5.15322 5.16955 5.22206 5.34004 5.39366 5.42960 5.43964 5.49144 5.61025 5.61590 5.65945 5.77187 5.79804 5.84357 5.85230 5.90119 5.97851 6.03301 6.10402 6.25485 6.30922 6.33489 6.34898 6.38504 6.57307 6.66420 6.69344 6.76313 7.40634 7.62353 8.07182 8.12182 8.33041 9.43621 9.97150 10.31465 11.36631 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002821 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.520407 B = 9924.509252 C =10609.198492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.129 3.871 11 C 0.130 3.870 12 O -0.560 6.560 13 C -0.156 4.156 14 C 0.111 3.889 15 N -0.596 5.596 16 C 0.555 3.445 17 O -0.544 6.544 18 C -0.118 4.118 19 C -0.037 4.037 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.134 4.134 26 C -0.162 4.162 27 C 0.117 3.883 28 C -0.116 4.116 29 H 0.257 0.743 30 H 0.380 0.620 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.383 0.617 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -18.266 -6.772 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.001 3.999 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.194 4.194 14 C -0.012 4.012 15 N -0.328 5.328 16 C 0.342 3.658 17 O -0.421 6.421 18 C -0.122 4.122 19 C -0.037 4.037 20 C -0.134 4.134 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.171 4.171 26 C -0.199 4.199 27 C -0.005 4.005 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.215 0.785 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.232 0.768 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.933 -19.253 -6.592 21.841 hybrid contribution -0.068 1.737 -0.034 1.738 sum -8.001 -17.516 -6.625 20.365 Atomic orbital electron populations 1.69614 1.05071 1.25956 1.57596 1.24720 0.95555 0.97699 1.02737 0.86250 0.78547 0.83396 0.77884 1.21267 1.21634 1.21230 1.19154 0.91049 0.83990 1.43040 0.91222 1.42271 1.05502 0.99983 1.89707 1.21314 0.93911 0.86047 0.98657 1.21280 0.90442 0.94747 0.84611 1.86372 1.61555 1.45135 1.43714 1.22534 0.98727 0.99006 0.99177 1.21799 0.94433 0.82069 1.02851 1.48038 1.42668 1.14385 1.27678 1.19291 0.82400 0.82826 0.81243 1.90673 1.48524 1.29756 1.73173 1.20054 0.92657 1.08625 0.90819 1.18687 0.91159 0.97341 0.96531 1.21022 0.92245 0.99738 1.00422 1.21115 0.96408 0.98435 0.97396 1.21176 0.99141 0.97313 0.96423 1.21127 0.92497 0.99818 0.99829 1.21015 0.97070 0.97771 0.96679 1.23095 1.03639 0.96982 0.93407 1.23309 1.04451 0.92364 0.99761 1.21548 0.91014 0.99051 0.88870 1.21841 0.97518 0.92912 1.03191 0.93365 0.78537 0.95382 0.95710 0.76827 0.89036 0.90963 0.89522 0.90870 0.85628 0.85833 0.86049 0.85959 0.86170 0.87676 0.87707 0.87194 0.87556 0.89422 0.90546 0.90511 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.17 5.07 -59.91 -0.30 -17.47 16 10 C 0.13 2.49 5.40 -4.04 -0.02 2.47 16 11 C 0.13 2.04 0.71 -90.58 -0.06 1.97 16 12 O -0.56 -9.20 11.71 -35.23 -0.41 -9.61 16 13 C -0.16 -2.26 4.92 -26.63 -0.13 -2.39 16 14 C 0.11 1.41 5.96 -3.73 -0.02 1.39 16 15 N -0.60 -7.93 2.97 -172.79 -0.51 -8.44 16 16 C 0.56 7.72 5.69 -10.99 -0.06 7.66 16 17 O -0.54 -9.13 16.40 5.56 0.09 -9.04 16 18 C -0.12 -1.33 1.24 -156.81 -0.20 -1.52 16 19 C -0.04 -0.40 5.39 -104.63 -0.56 -0.97 16 20 C -0.12 -1.09 9.36 -39.58 -0.37 -1.46 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -1.12 10.05 -39.58 -0.40 -1.51 16 24 C -0.11 -1.22 9.32 -39.59 -0.37 -1.59 16 25 C -0.13 -1.29 9.82 -26.73 -0.26 -1.55 16 26 C -0.16 -1.49 7.61 -26.73 -0.20 -1.69 16 27 C 0.12 1.58 6.20 -3.71 -0.02 1.56 16 28 C -0.12 -1.60 5.11 -26.61 -0.14 -1.73 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.38 9.08 5.58 -40.82 -0.23 8.85 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.38 6.31 7.85 45.56 0.36 6.67 16 34 H 0.09 1.48 6.83 -51.93 -0.35 1.13 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.99 4.83 -51.93 -0.25 0.74 16 37 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 38 H 0.13 0.96 5.95 -52.49 -0.31 0.65 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 1.50 7.33 -52.48 -0.38 1.11 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.11 0.82 6.10 -51.93 -0.32 0.50 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 48 H 0.08 1.05 7.81 -51.93 -0.41 0.65 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -31.32 395.00 -10.21 -41.53 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -6.86 Total: 15.68 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.86 Total: -9.31 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.09 Total: -52.04 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.32 Total: -18.65 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.32 -10.21 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717325101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.460 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds