Wall clock time and date at job start Wed Apr 1 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47102 * 240.00061 * 3 2 1 5 5 H 1.48500 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47435 * 119.99764 * 3 2 1 7 7 C 1.38814 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99453 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00556 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49695 * 180.02562 * 9 7 2 11 11 C 1.53940 * 86.11609 * 155.35577 * 10 9 7 12 12 C 1.53001 * 113.74316 * 269.14781 * 11 10 9 13 13 C 1.52998 * 109.47212 * 172.22463 * 12 11 10 14 14 O 1.42905 * 109.47268 * 185.10339 * 13 12 11 15 15 N 1.46501 * 113.73657 * 137.95597 * 11 10 9 16 16 C 1.34782 * 120.00410 * 74.68907 * 15 11 10 17 17 O 1.21284 * 119.99614 * 355.37270 * 16 15 11 18 18 C 1.50698 * 120.00035 * 175.37415 * 16 15 11 19 19 C 1.52996 * 109.46789 * 185.54017 * 18 16 15 20 20 C 1.50697 * 115.56274 * 270.87237 * 19 18 16 21 21 C 1.38232 * 120.00174 * 149.36135 * 20 19 18 22 22 C 1.38239 * 120.00144 * 179.79251 * 21 20 19 23 23 C 1.38226 * 119.99937 * 0.44097 * 22 21 20 24 24 C 1.38238 * 120.00189 * 359.80960 * 23 22 21 25 25 C 1.38236 * 119.99698 * 359.97438 * 24 23 22 26 26 C 1.53002 * 117.50021 * 56.56797 * 19 18 16 27 27 C 1.53003 * 60.03382 * 107.49777 * 26 19 18 28 28 C 1.47810 * 134.45410 * 359.86564 * 9 7 2 29 29 H 0.96994 * 120.00575 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.76595 * 41.05187 * 10 9 7 31 31 H 1.09000 * 113.86807 * 269.67324 * 10 9 7 32 32 H 1.08994 * 109.47583 * 292.23454 * 12 11 10 33 33 H 1.09003 * 109.46674 * 52.22870 * 12 11 10 34 34 H 1.08998 * 109.47725 * 305.10943 * 13 12 11 35 35 H 1.09003 * 109.46806 * 65.10502 * 13 12 11 36 36 H 0.96698 * 113.99714 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00122 * 254.68441 * 15 11 10 38 38 H 1.09004 * 109.47365 * 65.53767 * 18 16 15 39 39 H 1.09005 * 109.46913 * 305.54050 * 18 16 15 40 40 H 1.08002 * 119.99719 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99665 * 180.27207 * 22 21 20 42 42 H 1.08001 * 120.00492 * 179.83764 * 23 22 21 43 43 H 1.07995 * 120.00447 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99933 * 179.97438 * 25 24 23 45 45 H 1.08996 * 117.49798 * 359.97438 * 26 19 18 46 46 H 1.08998 * 117.49868 * 214.99867 * 26 19 18 47 47 H 1.09007 * 117.49994 * 107.47716 * 27 26 19 48 48 H 1.08999 * 117.49802 * 252.47668 * 27 26 19 49 49 H 1.08997 * 113.76793 * 90.37935 * 28 9 7 50 50 H 1.09002 * 113.84095 * 318.91858 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 6 0.3629 -4.0553 2.1706 13 6 -1.0708 -4.1426 2.6976 14 8 -1.0654 -3.9978 4.1193 15 7 -0.3333 -5.2613 0.0981 16 6 0.0831 -6.4967 0.4401 17 8 1.0715 -6.6343 1.1294 18 6 -0.6794 -7.7070 -0.0340 19 6 -0.0849 -8.9654 0.6016 20 6 1.0357 -9.6154 -0.1682 21 6 2.0323 -10.2970 0.5049 22 6 3.0580 -10.8969 -0.2016 23 6 3.0920 -10.8074 -1.5805 24 6 2.0982 -10.1215 -2.2534 25 6 1.0701 -9.5254 -1.5472 26 6 -0.0181 -9.0213 2.1291 27 6 -1.0346 -9.8823 1.3766 28 6 -0.1057 -2.7571 0.0025 29 1 -0.4851 0.8399 0.0004 30 1 2.5619 -4.0321 0.6574 31 1 1.8333 -4.2372 -0.9950 32 1 0.9392 -4.9022 2.5431 33 1 0.8198 -3.1266 2.5125 34 1 -1.6702 -3.3479 2.2537 35 1 -1.4970 -5.1103 2.4326 36 1 -1.9431 -4.0435 4.5226 37 1 -1.0832 -5.1527 -0.5074 38 1 -0.6078 -7.7795 -1.1192 39 1 -1.7261 -7.6134 0.2556 40 1 2.0080 -10.3633 1.5826 41 1 3.8342 -11.4331 0.3242 42 1 3.8947 -11.2739 -2.1323 43 1 2.1250 -10.0512 -3.3307 44 1 0.2939 -8.9890 -2.0729 45 1 -0.3972 -8.1614 2.6812 46 1 0.8367 -9.5278 2.5772 47 1 -0.8484 -10.9553 1.3294 48 1 -2.0829 -9.5892 1.4341 49 1 -0.5311 -2.8722 -0.9944 50 1 -0.7189 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717504577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:49 Heat of formation + Delta-G solvation = 24.538701 kcal Electronic energy + Delta-G solvation = -30858.895835 eV Core-core repulsion = 26853.850522 eV Total energy + Delta-G solvation = -4005.045313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.45620 -39.51645 -37.96389 -36.68528 -36.35153 -33.55932 -32.00375 -31.26278 -30.57991 -30.41897 -29.03741 -26.97902 -25.03422 -23.74609 -23.13064 -22.94926 -22.04154 -21.70835 -20.50997 -19.23494 -18.60520 -17.39975 -17.06632 -16.79071 -16.67548 -15.61806 -15.33043 -15.21147 -15.00277 -14.72918 -14.49074 -14.34543 -13.97294 -13.75185 -13.60768 -13.57403 -13.40149 -12.85818 -12.55338 -12.37969 -12.10507 -11.79737 -11.73002 -11.60590 -11.39127 -11.18450 -11.06906 -11.00874 -10.91559 -10.75000 -10.67105 -10.61908 -10.19939 -10.16732 -9.93207 -9.68462 -9.52652 -9.08602 -8.97545 -8.86370 -8.57637 -8.49540 -6.91872 -5.79731 -3.11332 1.28054 1.34761 2.98942 3.31077 3.40897 3.44522 3.45609 3.64322 4.05143 4.40042 4.46939 4.50579 4.58435 4.63223 4.80931 4.90656 4.99929 5.02920 5.13974 5.24112 5.29648 5.33196 5.39043 5.48526 5.49802 5.52204 5.54300 5.67019 5.73274 5.74913 5.86854 5.90340 5.97106 5.97645 5.99177 6.09338 6.36473 6.42669 6.45057 6.51085 6.53697 6.57263 6.66527 6.81090 6.86791 6.93813 7.12907 7.34785 7.48946 7.90630 7.91699 7.96388 8.64090 9.02244 9.68364 10.55115 11.37905 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002932 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.645985 B = 9547.592196 C =10799.813107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.125 3.875 11 C 0.127 3.873 12 C -0.096 4.096 13 C 0.085 3.915 14 O -0.574 6.574 15 N -0.720 5.720 16 C 0.509 3.491 17 O -0.522 6.522 18 C -0.109 4.109 19 C -0.073 4.073 20 C -0.028 4.028 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.143 4.143 27 C -0.170 4.170 28 C 0.166 3.834 29 H 0.254 0.746 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.371 0.629 37 H 0.395 0.605 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.029 0.971 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -22.254 -0.312 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.331 5.331 10 C -0.002 4.002 11 C 0.041 3.959 12 C -0.134 4.134 13 C 0.008 3.992 14 O -0.378 6.378 15 N -0.372 5.372 16 C 0.294 3.706 17 O -0.397 6.397 18 C -0.149 4.149 19 C -0.074 4.074 20 C -0.028 4.028 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.180 4.180 27 C -0.206 4.206 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.216 0.784 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.047 0.953 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.924 -21.917 0.100 22.266 hybrid contribution -0.516 1.000 -0.598 1.275 sum -4.440 -20.917 -0.498 21.389 Atomic orbital electron populations 1.69773 1.05003 1.25529 1.56722 1.24760 0.95704 0.97514 1.02317 0.86176 0.78491 0.82979 0.77996 1.21196 1.21558 1.20979 1.18960 0.90286 0.81605 1.43879 0.90101 1.45685 1.01861 0.99490 1.86041 1.22832 0.94841 0.85674 0.96849 1.22870 0.95290 0.84529 0.93210 1.21325 0.95478 1.04406 0.92200 1.22096 0.98459 0.98461 0.80208 1.86511 1.33657 1.96547 1.21106 1.46239 1.36104 1.05583 1.49293 1.20447 0.85252 0.84160 0.80701 1.90691 1.25367 1.86049 1.37578 1.21313 0.99869 0.91480 1.02237 1.19679 0.97732 0.96160 0.93787 1.18941 0.94473 0.96410 0.92998 1.21035 0.94232 0.97958 0.99999 1.21103 0.98309 0.99816 0.94339 1.21107 0.98944 1.00154 0.94574 1.21098 0.94694 0.97974 0.99775 1.20972 0.98930 1.00187 0.93550 1.22954 1.00673 1.01707 0.92660 1.23256 0.96145 0.97495 1.03750 1.22573 0.88978 0.87641 0.96826 0.93574 0.93239 0.94789 0.90330 0.89325 0.93438 0.94915 0.78362 0.77115 0.88436 0.88908 0.85998 0.86262 0.86372 0.86195 0.86128 0.88401 0.88499 0.88703 0.88505 0.95314 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 11.39 55.49 0.63 -26.17 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.60 -15.49 3.55 -177.54 -0.63 -16.12 16 10 C 0.12 2.74 8.04 -2.97 -0.02 2.72 16 11 C 0.13 2.40 0.68 -134.06 -0.09 2.31 16 12 C -0.10 -1.85 4.67 -26.73 -0.12 -1.98 16 13 C 0.09 1.39 6.78 37.16 0.25 1.64 16 14 O -0.57 -9.25 13.66 -35.23 -0.48 -9.73 16 15 N -0.72 -10.49 4.72 -49.09 -0.23 -10.72 16 16 C 0.51 7.31 7.24 -10.98 -0.08 7.23 16 17 O -0.52 -9.38 13.22 5.55 0.07 -9.31 16 18 C -0.11 -1.13 5.63 -27.89 -0.16 -1.29 16 19 C -0.07 -0.79 1.63 -155.62 -0.25 -1.04 16 20 C -0.03 -0.33 5.48 -104.63 -0.57 -0.91 16 21 C -0.11 -1.32 9.36 -39.58 -0.37 -1.69 16 22 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 23 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.31 9.27 -39.58 -0.37 -1.68 16 26 C -0.14 -1.57 8.26 -26.73 -0.22 -1.79 16 27 C -0.17 -1.49 9.86 -26.69 -0.26 -1.75 16 28 C 0.17 3.72 6.62 -2.85 -0.02 3.70 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.60 6.53 -51.93 -0.34 1.26 16 33 H 0.09 2.02 8.02 -51.93 -0.42 1.60 16 34 H 0.05 0.79 7.37 -51.93 -0.38 0.40 16 35 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 36 H 0.37 3.96 9.12 45.56 0.42 4.37 16 37 H 0.40 4.67 8.67 -40.82 -0.35 4.32 16 38 H 0.10 0.88 5.94 -51.93 -0.31 0.57 16 39 H 0.09 0.75 7.88 -51.93 -0.41 0.34 16 40 H 0.12 1.29 5.94 -52.49 -0.31 0.98 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.13 6.27 -52.48 -0.33 0.80 16 45 H 0.10 1.19 7.98 -51.93 -0.41 0.77 16 46 H 0.10 1.05 6.10 -51.93 -0.32 0.73 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.72 8.04 -51.93 -0.42 0.30 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 2.00 6.49 -51.93 -0.34 1.66 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -34.18 402.29 -10.17 -44.35 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.83 Total: 10.57 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.74 Total: -6.13 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.23 Total: -53.01 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.41 Total: -19.04 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.18 -10.17 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.886 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds