Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47102 * 240.00061 * 3 2 1 5 5 H 1.48500 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47435 * 119.99764 * 3 2 1 7 7 C 1.38814 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99453 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00556 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49695 * 180.02562 * 9 7 2 11 11 C 1.53940 * 86.11609 * 155.35577 * 10 9 7 12 12 C 1.53001 * 113.74316 * 269.14781 * 11 10 9 13 13 C 1.52998 * 109.47212 * 172.22463 * 12 11 10 14 14 O 1.42905 * 109.47268 * 185.10339 * 13 12 11 15 15 N 1.46501 * 113.73657 * 137.95597 * 11 10 9 16 16 C 1.34782 * 120.00410 * 74.68907 * 15 11 10 17 17 O 1.21284 * 119.99614 * 355.37270 * 16 15 11 18 18 C 1.50698 * 120.00035 * 175.37415 * 16 15 11 19 19 C 1.52996 * 109.46789 * 185.54017 * 18 16 15 20 20 C 1.50697 * 115.56274 * 270.87237 * 19 18 16 21 21 C 1.38232 * 120.00174 * 149.36135 * 20 19 18 22 22 C 1.38239 * 120.00144 * 179.79251 * 21 20 19 23 23 C 1.38226 * 119.99937 * 0.44097 * 22 21 20 24 24 C 1.38238 * 120.00189 * 359.80960 * 23 22 21 25 25 C 1.38236 * 119.99698 * 359.97438 * 24 23 22 26 26 C 1.53002 * 117.50021 * 56.56797 * 19 18 16 27 27 C 1.53003 * 60.03382 * 107.49777 * 26 19 18 28 28 C 1.47810 * 134.45410 * 359.86564 * 9 7 2 29 29 H 0.96994 * 120.00575 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.76595 * 41.05187 * 10 9 7 31 31 H 1.09000 * 113.86807 * 269.67324 * 10 9 7 32 32 H 1.08994 * 109.47583 * 292.23454 * 12 11 10 33 33 H 1.09003 * 109.46674 * 52.22870 * 12 11 10 34 34 H 1.08998 * 109.47725 * 305.10943 * 13 12 11 35 35 H 1.09003 * 109.46806 * 65.10502 * 13 12 11 36 36 H 0.96698 * 113.99714 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00122 * 254.68441 * 15 11 10 38 38 H 1.09004 * 109.47365 * 65.53767 * 18 16 15 39 39 H 1.09005 * 109.46913 * 305.54050 * 18 16 15 40 40 H 1.08002 * 119.99719 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99665 * 180.27207 * 22 21 20 42 42 H 1.08001 * 120.00492 * 179.83764 * 23 22 21 43 43 H 1.07995 * 120.00447 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99933 * 179.97438 * 25 24 23 45 45 H 1.08996 * 117.49798 * 359.97438 * 26 19 18 46 46 H 1.08998 * 117.49868 * 214.99867 * 26 19 18 47 47 H 1.09007 * 117.49994 * 107.47716 * 27 26 19 48 48 H 1.08999 * 117.49802 * 252.47668 * 27 26 19 49 49 H 1.08997 * 113.76793 * 90.37935 * 28 9 7 50 50 H 1.09002 * 113.84095 * 318.91858 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 6 0.3629 -4.0553 2.1706 13 6 -1.0708 -4.1426 2.6976 14 8 -1.0654 -3.9978 4.1193 15 7 -0.3333 -5.2613 0.0981 16 6 0.0831 -6.4967 0.4401 17 8 1.0715 -6.6343 1.1294 18 6 -0.6794 -7.7070 -0.0340 19 6 -0.0849 -8.9654 0.6016 20 6 1.0357 -9.6154 -0.1682 21 6 2.0323 -10.2970 0.5049 22 6 3.0580 -10.8969 -0.2016 23 6 3.0920 -10.8074 -1.5805 24 6 2.0982 -10.1215 -2.2534 25 6 1.0701 -9.5254 -1.5472 26 6 -0.0181 -9.0213 2.1291 27 6 -1.0346 -9.8823 1.3766 28 6 -0.1057 -2.7571 0.0025 29 1 -0.4851 0.8399 0.0004 30 1 2.5619 -4.0321 0.6574 31 1 1.8333 -4.2372 -0.9950 32 1 0.9392 -4.9022 2.5431 33 1 0.8198 -3.1266 2.5125 34 1 -1.6702 -3.3479 2.2537 35 1 -1.4970 -5.1103 2.4326 36 1 -1.9431 -4.0435 4.5226 37 1 -1.0832 -5.1527 -0.5074 38 1 -0.6078 -7.7795 -1.1192 39 1 -1.7261 -7.6134 0.2556 40 1 2.0080 -10.3633 1.5826 41 1 3.8342 -11.4331 0.3242 42 1 3.8947 -11.2739 -2.1323 43 1 2.1250 -10.0512 -3.3307 44 1 0.2939 -8.9890 -2.0729 45 1 -0.3972 -8.1614 2.6812 46 1 0.8367 -9.5278 2.5772 47 1 -0.8484 -10.9553 1.3294 48 1 -2.0829 -9.5892 1.4341 49 1 -0.5311 -2.8722 -0.9944 50 1 -0.7189 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717504577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = 1.688182 kcal Electronic energy + Delta-G solvation = -30859.886708 eV Core-core repulsion = 26853.850522 eV Total energy + Delta-G solvation = -4006.036185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.60899 -40.66515 -39.22454 -37.70136 -37.62179 -35.17188 -33.78699 -32.23304 -31.82492 -31.34824 -30.04025 -28.87033 -26.84438 -25.18985 -24.19944 -23.72200 -23.32516 -22.78249 -21.83269 -20.21244 -20.01352 -18.78308 -18.36889 -18.17333 -17.91422 -17.07925 -16.71410 -16.24987 -16.21054 -15.91028 -15.84515 -15.53529 -15.31099 -14.93597 -14.88326 -14.65697 -14.39198 -14.29762 -13.76197 -13.61106 -13.35184 -13.28065 -13.04851 -12.97082 -12.77770 -12.66302 -12.58899 -12.29672 -12.23333 -12.07588 -11.92398 -11.83566 -11.74020 -11.46844 -11.36023 -10.98238 -10.94546 -10.87711 -10.42135 -9.92247 -9.77002 -9.36322 -8.96632 -7.94001 -5.26846 0.49397 0.55120 1.44675 1.47863 1.53668 1.84959 2.16707 2.48645 2.79048 3.16579 3.20135 3.26495 3.41654 3.63135 3.64449 3.80372 3.84228 3.97584 4.13809 4.16341 4.23783 4.26896 4.31267 4.32381 4.44143 4.49068 4.58623 4.64408 4.69652 4.71368 4.75478 4.84463 4.84788 4.91775 4.98200 5.07372 5.12203 5.13876 5.20313 5.21395 5.23586 5.25853 5.31585 5.46930 5.64766 5.67197 5.77114 5.78199 5.89525 6.17656 6.77929 6.89645 6.91484 7.49398 7.55805 8.49652 9.22642 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002932 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.645985 B = 9547.592196 C =10799.813107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.632 5.632 10 C 0.122 3.878 11 C 0.161 3.839 12 C -0.089 4.089 13 C 0.096 3.904 14 O -0.593 6.593 15 N -0.711 5.711 16 C 0.509 3.491 17 O -0.559 6.559 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.044 4.044 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.160 4.160 27 C -0.141 4.141 28 C 0.172 3.828 29 H 0.252 0.748 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.413 0.587 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.119 0.881 49 H 0.035 0.965 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -23.717 -1.211 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.359 5.359 10 C -0.005 4.005 11 C 0.074 3.926 12 C -0.128 4.128 13 C 0.019 3.981 14 O -0.401 6.401 15 N -0.364 5.364 16 C 0.296 3.704 17 O -0.437 6.437 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.044 4.044 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.197 4.197 27 C -0.178 4.178 28 C 0.046 3.954 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.246 0.754 37 H 0.250 0.750 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.119 0.881 48 H 0.137 0.863 49 H 0.053 0.947 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.422 -23.424 -0.809 24.057 hybrid contribution 0.007 1.377 -0.284 1.406 sum -5.416 -22.048 -1.093 22.729 Atomic orbital electron populations 1.69927 1.06078 1.25911 1.57499 1.25536 0.96669 1.00463 1.02392 0.85182 0.77304 0.78904 0.78106 1.20395 1.21440 1.20634 1.19268 0.90631 0.83148 1.43809 0.90532 1.45971 1.03519 1.00102 1.86279 1.22920 0.96248 0.84202 0.97082 1.22062 0.93028 0.84966 0.92584 1.21172 0.97477 1.01538 0.92581 1.21917 0.95916 0.99816 0.80502 1.86449 1.36181 1.96638 1.20871 1.46005 1.36365 1.04440 1.49617 1.21204 0.84824 0.84702 0.79620 1.90696 1.27226 1.86513 1.39233 1.21351 1.00706 0.88639 1.03235 1.19767 0.98443 0.96946 0.93320 1.19181 0.94928 0.96700 0.93607 1.21223 0.94987 0.98840 1.00283 1.21383 0.98514 0.99824 0.94893 1.21430 0.99556 1.00121 0.94628 1.21435 0.94486 0.97565 1.00932 1.21243 0.99691 1.00577 0.93486 1.22882 1.01730 1.02175 0.92938 1.23318 0.96536 0.97372 1.00544 1.22460 0.87228 0.88935 0.96771 0.93949 0.94830 0.94110 0.91394 0.93608 0.93667 0.92082 0.75448 0.74973 0.86486 0.85586 0.86056 0.84771 0.84405 0.84282 0.84549 0.89738 0.89304 0.88112 0.86298 0.94713 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.77 11.39 21.65 0.25 -55.52 16 2 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 3 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.89 10.70 84.03 0.90 -13.00 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -33.25 3.55 -715.61 -2.54 -35.79 16 10 C 0.12 5.47 8.04 86.48 0.70 6.17 16 11 C 0.16 6.10 0.68 5.35 0.00 6.10 16 12 C -0.09 -3.52 4.67 30.59 0.14 -3.37 16 13 C 0.10 3.04 6.78 71.98 0.49 3.53 16 14 O -0.59 -18.54 13.66 -148.98 -2.04 -20.58 16 15 N -0.71 -19.41 4.72 -427.61 -2.02 -21.43 16 16 C 0.51 13.67 7.24 87.66 0.63 14.30 16 17 O -0.56 -19.90 13.22 -3.04 -0.04 -19.94 16 18 C -0.10 -1.74 5.63 29.85 0.17 -1.57 16 19 C -0.08 -1.64 1.63 -52.90 -0.09 -1.73 16 20 C -0.04 -0.98 5.48 -19.87 -0.11 -1.09 16 21 C -0.14 -3.08 9.36 22.27 0.21 -2.87 16 22 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 23 C -0.14 -2.65 10.05 22.27 0.22 -2.43 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 25 C -0.13 -2.68 9.27 22.27 0.21 -2.47 16 26 C -0.16 -3.34 8.26 30.60 0.25 -3.09 16 27 C -0.14 -2.07 9.86 30.62 0.30 -1.77 16 28 C 0.17 7.79 6.62 86.43 0.57 8.36 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.83 6.53 -2.39 -0.02 2.82 16 33 H 0.05 2.18 8.02 -2.39 -0.02 2.16 16 34 H 0.05 1.46 7.37 -2.39 -0.02 1.44 16 35 H 0.06 1.60 7.84 -2.39 -0.02 1.58 16 36 H 0.40 7.69 9.12 -74.06 -0.68 7.02 16 37 H 0.41 8.57 8.67 -92.71 -0.80 7.77 16 38 H 0.12 1.64 5.94 -2.38 -0.01 1.63 16 39 H 0.13 1.40 7.88 -2.38 -0.02 1.39 16 40 H 0.12 2.62 5.94 -2.91 -0.02 2.60 16 41 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.14 2.18 6.27 -2.91 -0.02 2.16 16 45 H 0.08 1.98 7.98 -2.39 -0.02 1.96 16 46 H 0.09 1.94 6.10 -2.39 -0.01 1.93 16 47 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.12 1.24 8.04 -2.39 -0.02 1.22 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.06 2.85 6.49 -2.39 -0.02 2.84 16 Total: -1.00 -76.34 402.29 0.65 -75.69 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.51 Total: 31.63 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.52 Total: -2.28 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.31 Total: -112.75 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.08 Total: -40.51 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.34 0.65 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.377 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds