Wall clock time and date at job start Wed Apr 1 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46782 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47610 * 60.00212 * 10 9 7 13 13 C 1.53002 * 109.47080 * 64.99307 * 12 10 9 14 14 N 1.46498 * 109.47113 * 180.02562 * 13 12 10 15 15 C 1.34772 * 120.00060 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00347 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00231 * 180.02562 * 15 14 13 18 18 C 1.53009 * 119.80745 * 250.98614 * 17 15 14 19 19 C 1.53001 * 60.65334 * 247.68740 * 18 17 15 20 20 H 1.09002 * 120.24982 * 112.13182 * 19 18 17 21 21 C 1.54483 * 118.06731 * 269.59581 * 19 18 17 22 22 O 1.44426 * 104.80641 * 86.82503 * 21 19 18 23 23 C 1.43867 * 105.56570 * 319.94569 * 22 21 19 24 24 C 1.52999 * 109.47431 * 299.99828 * 10 9 7 25 25 C 1.50703 * 109.47180 * 295.00234 * 24 10 9 26 26 C 1.38230 * 120.00292 * 269.72607 * 25 24 10 27 27 C 1.38238 * 119.99898 * 179.76913 * 26 25 24 28 28 C 1.38230 * 119.99961 * 0.49909 * 27 26 25 29 29 C 1.38229 * 119.99934 * 359.75430 * 28 27 26 30 30 C 1.38230 * 120.00345 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 33 33 H 1.08991 * 109.47678 * 185.00094 * 12 10 9 34 34 H 1.09012 * 109.46979 * 305.00173 * 12 10 9 35 35 H 1.09000 * 109.47139 * 300.00440 * 13 12 10 36 36 H 1.08996 * 109.46921 * 60.00642 * 13 12 10 37 37 H 0.97005 * 120.00071 * 0.02562 * 14 13 12 38 38 H 1.08997 * 117.43225 * 355.36451 * 18 17 15 39 39 H 1.08995 * 117.43047 * 140.01423 * 18 17 15 40 40 H 1.08998 * 110.36782 * 205.65975 * 21 19 18 41 41 H 1.09002 * 110.36670 * 327.99090 * 21 19 18 42 42 H 1.09004 * 109.56016 * 281.16702 * 23 22 21 43 43 H 1.09004 * 110.92187 * 159.01442 * 23 22 21 44 44 H 1.09002 * 109.46741 * 54.99923 * 24 10 9 45 45 H 1.08999 * 109.47555 * 175.00148 * 24 10 9 46 46 H 1.08003 * 119.99971 * 359.97438 * 26 25 24 47 47 H 1.08000 * 119.99296 * 180.23083 * 27 26 25 48 48 H 1.08001 * 119.99830 * 179.72436 * 28 27 26 49 49 H 1.08002 * 119.99886 * 179.97438 * 29 28 27 50 50 H 1.08003 * 120.00155 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 5.1837 -2.2717 0.0009 12 6 3.7430 -3.2729 -1.2495 13 6 4.2254 -2.5270 -2.4952 14 7 3.8715 -3.2947 -3.6917 15 6 4.1982 -2.8278 -4.9130 16 8 4.7856 -1.7722 -5.0216 17 6 3.8336 -3.6172 -6.1439 18 6 4.9293 -4.3165 -6.9512 19 6 4.1813 -3.1337 -7.5697 20 1 4.6997 -2.1933 -7.7567 21 6 2.9045 -3.4288 -8.3878 22 8 1.8394 -3.4561 -7.4127 23 6 2.3830 -4.1341 -6.2661 24 6 3.7420 -3.2735 1.2489 25 6 4.2162 -2.5394 2.4766 26 6 5.4791 -2.7832 2.9830 27 6 5.9159 -2.1062 4.1064 28 6 5.0858 -1.1931 4.7294 29 6 3.8210 -0.9532 4.2260 30 6 3.3863 -1.6259 3.0994 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.2183 -4.2528 -1.2059 34 1 2.6608 -3.3958 -1.2959 35 1 3.7500 -1.5471 -2.5388 36 1 5.3074 -2.4041 -2.4489 37 1 3.4013 -4.1387 -3.6050 38 1 5.9620 -4.1521 -6.6437 39 1 4.7087 -5.3098 -7.3419 40 1 2.7305 -2.6383 -9.1178 41 1 2.9878 -4.3948 -8.8859 42 1 2.3770 -5.2099 -6.4415 43 1 1.8171 -3.8923 -5.3664 44 1 2.6599 -3.3963 1.2944 45 1 4.2174 -4.2534 1.2052 46 1 6.1259 -3.5001 2.4991 47 1 6.9040 -2.2940 4.4998 48 1 5.4254 -0.6675 5.6096 49 1 3.1723 -0.2400 4.7130 50 1 2.3979 -1.4387 2.7064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717863301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:36 Heat of formation + Delta-G solvation = -13.782645 kcal Electronic energy + Delta-G solvation = -29949.462156 eV Core-core repulsion = 25942.755105 eV Total energy + Delta-G solvation = -4006.707051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.97878 -39.00686 -38.69347 -36.71611 -34.90348 -34.43958 -32.46935 -31.23391 -30.40410 -29.97272 -28.95649 -27.21569 -25.68017 -24.32578 -23.59497 -22.28015 -22.05910 -21.31675 -20.77443 -19.87363 -19.13816 -17.96132 -17.52036 -16.26979 -16.22218 -15.75074 -15.56345 -15.32197 -14.91781 -14.79207 -14.68112 -14.27645 -14.25234 -14.14187 -13.50805 -13.20969 -13.07454 -12.93488 -12.88461 -12.78577 -12.49840 -12.13158 -11.78077 -11.67743 -11.62069 -11.49825 -11.07955 -10.99278 -10.93153 -10.86280 -10.51489 -10.48343 -10.41377 -10.24828 -10.01227 -9.94455 -9.61072 -9.48525 -8.98146 -8.81624 -8.44718 -8.17078 -7.28157 -5.79208 -3.14277 1.82018 1.90176 2.50658 3.13129 3.27043 3.39589 3.44278 3.48730 3.77014 4.11005 4.21334 4.27072 4.59466 4.61847 4.71693 4.75281 5.04427 5.17186 5.23319 5.26273 5.30580 5.31481 5.38548 5.39533 5.43867 5.50050 5.53018 5.54862 5.62328 5.69937 5.82550 5.89060 5.92180 5.98561 6.05518 6.14665 6.25662 6.31497 6.43872 6.46589 6.57804 6.60165 6.68932 6.71629 6.85586 6.89371 7.05141 7.28427 7.54048 7.64460 7.94569 8.33742 8.39584 9.18081 9.91908 10.11156 11.38449 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.002759 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.546846 B =10144.941186 C =11427.933377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.875 3.125 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.193 3.807 11 H 0.056 0.944 12 C -0.139 4.139 13 C 0.126 3.874 14 N -0.718 5.718 15 C 0.557 3.443 16 O -0.539 6.539 17 C -0.209 4.209 18 C -0.107 4.107 19 C -0.160 4.160 20 H 0.132 0.868 21 C 0.073 3.927 22 O -0.366 6.366 23 C 0.086 3.914 24 C -0.093 4.093 25 C -0.058 4.058 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.136 4.136 29 C -0.127 4.127 30 C -0.087 4.087 31 H 0.259 0.741 32 H 0.363 0.637 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.398 0.602 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.644 -12.637 -6.772 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.705 3.295 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.179 4.179 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.341 3.659 16 O -0.416 6.416 17 C -0.213 4.213 18 C -0.145 4.145 19 C -0.179 4.179 20 H 0.149 0.851 21 C -0.004 4.004 22 O -0.284 6.284 23 C 0.009 3.991 24 C -0.133 4.133 25 C -0.058 4.058 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.155 4.155 29 C -0.145 4.145 30 C -0.105 4.105 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.232 0.768 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.132 0.868 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.579 -11.805 -6.848 17.268 hybrid contribution 0.554 0.997 0.215 1.160 sum 11.133 -10.808 -6.633 16.874 Atomic orbital electron populations 1.69685 1.05076 1.25781 1.57310 1.24593 0.95032 0.96914 1.01954 0.86700 0.79461 0.85551 0.77754 1.21105 1.22027 1.20275 1.18876 0.80546 0.94317 1.42984 0.89055 1.42765 1.04142 1.01798 1.89684 1.20004 0.94498 0.86833 0.90494 0.92568 1.22245 1.02913 0.97798 0.94969 1.21391 0.99333 0.96558 0.82329 1.45977 1.59543 1.25339 1.05903 1.18974 0.78811 0.84843 0.83230 1.90714 1.41733 1.22570 1.86549 1.23381 0.97578 1.06969 0.93331 1.23132 0.96305 0.96721 0.98309 1.24345 1.00501 1.01095 0.91966 0.85058 1.22988 0.84063 1.01878 0.91467 1.89116 1.35217 1.78828 1.25263 1.22753 0.89420 0.96082 0.90811 1.21127 1.02479 0.96650 0.93021 1.19835 0.93443 0.96672 0.95829 1.20992 0.96069 1.00726 0.96981 1.20947 0.99200 0.97985 0.96907 1.20998 0.94821 0.99354 1.00284 1.21190 0.96111 0.99994 0.97184 1.21414 1.01175 0.94253 0.93634 0.93126 0.80463 0.92767 0.90218 0.89844 0.92632 0.76836 0.87296 0.87675 0.88157 0.91599 0.91307 0.87870 0.90059 0.92434 0.86923 0.87114 0.87161 0.86800 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.97 55.49 0.78 -27.12 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.87 21.90 27.73 -169.99 -4.71 17.19 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -5.91 8.36 -15.06 -0.13 -6.04 16 8 H 0.09 2.43 6.87 -52.48 -0.36 2.07 16 9 N -0.74 -15.64 3.93 -53.43 -0.21 -15.85 16 10 C 0.19 3.22 2.67 -67.93 -0.18 3.04 16 11 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.14 -2.08 4.73 -26.73 -0.13 -2.20 16 13 C 0.13 2.05 5.56 -4.04 -0.02 2.02 16 14 N -0.72 -10.00 5.45 -60.29 -0.33 -10.32 16 15 C 0.56 8.58 7.42 -10.99 -0.08 8.50 16 16 O -0.54 -10.64 16.85 5.55 0.09 -10.55 16 17 C -0.21 -2.42 2.84 -154.08 -0.44 -2.85 16 18 C -0.11 -0.91 9.89 -26.73 -0.26 -1.17 16 19 C -0.16 -1.66 6.90 -89.05 -0.61 -2.28 16 20 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 21 C 0.07 0.68 7.45 37.94 0.28 0.96 16 22 O -0.37 -4.66 11.62 -35.23 -0.41 -5.06 16 23 C 0.09 0.93 7.09 37.93 0.27 1.20 16 24 C -0.09 -1.48 4.75 -27.88 -0.13 -1.61 16 25 C -0.06 -0.96 4.95 -104.62 -0.52 -1.48 16 26 C -0.13 -1.90 9.70 -39.58 -0.38 -2.29 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 28 C -0.14 -2.00 10.05 -39.59 -0.40 -2.40 16 29 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 30 C -0.09 -1.59 9.31 -39.58 -0.37 -1.96 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.36 8.06 5.89 -40.82 -0.24 7.82 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.34 7.11 -51.92 -0.37 0.97 16 35 H 0.08 1.70 7.75 -51.93 -0.40 1.30 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 4.34 8.28 -40.82 -0.34 4.00 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 1.16 7.88 -51.93 -0.41 0.75 16 44 H 0.08 1.45 7.05 -51.93 -0.37 1.08 16 45 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 46 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 47 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 50 H 0.14 2.89 7.37 -52.48 -0.39 2.51 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -32.72 407.64 -10.60 -43.33 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.96 Total: 15.34 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.99 Total: -13.09 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.24 Total: -53.29 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.32 Total: -15.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.72 -10.60 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717863301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.543 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds