Wall clock time and date at job start Wed Apr 1 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00430 * 2 1 4 4 H 1.48502 * 109.47022 * 265.20181 * 3 2 1 5 5 H 1.48492 * 109.46735 * 25.20192 * 3 2 1 6 6 H 1.48498 * 109.47060 * 145.20133 * 3 2 1 7 7 C 1.38815 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99530 * 333.00194 * 7 2 1 9 9 N 1.36933 * 120.00279 * 152.99416 * 7 2 1 10 10 C 1.47018 * 125.64791 * 349.70283 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02164 * 10 9 7 12 12 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 13 13 O 1.42896 * 111.00123 * 82.60950 * 12 11 10 14 14 C 1.53004 * 111.00499 * 206.42418 * 12 11 10 15 15 N 1.46503 * 109.46728 * 180.02562 * 14 12 11 16 16 C 1.34776 * 119.99433 * 180.02562 * 15 14 12 17 17 O 1.21549 * 120.00344 * 0.02562 * 16 15 14 18 18 C 1.47851 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.39569 * 120.14451 * 359.72529 * 18 16 15 20 20 C 1.37959 * 119.85500 * 179.78583 * 19 18 16 21 21 C 1.38361 * 120.14278 * 0.49203 * 20 19 18 22 22 C 1.50694 * 119.85102 * 179.76470 * 21 20 19 23 23 C 1.53781 * 113.62140 * 37.47320 * 22 21 20 24 24 C 1.53780 * 87.08317 * 220.01806 * 23 22 21 25 25 C 1.53777 * 113.61629 * 299.96953 * 22 21 20 26 26 C 1.38361 * 120.29085 * 359.73456 * 21 20 19 27 27 C 1.37959 * 120.14561 * 0.02775 * 26 21 20 28 28 C 1.47432 * 125.64697 * 169.39206 * 9 7 2 29 29 H 0.96998 * 120.00029 * 185.04640 * 1 2 3 30 30 H 1.08994 * 109.88300 * 300.43777 * 10 9 7 31 31 H 1.09004 * 109.88225 * 61.60548 * 10 9 7 32 32 H 1.08996 * 110.72115 * 140.55445 * 11 10 9 33 33 H 1.09006 * 110.71987 * 263.82833 * 11 10 9 34 34 H 0.96704 * 113.99761 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47401 * 300.00046 * 14 12 11 36 36 H 1.09000 * 109.47052 * 60.00364 * 14 12 11 37 37 H 0.96996 * 120.00618 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.07318 * 359.97438 * 19 18 16 39 39 H 1.07996 * 119.92713 * 180.22960 * 20 19 18 40 40 H 1.09007 * 112.84784 * 168.78102 * 22 21 20 41 41 H 1.09000 * 113.60776 * 334.56793 * 23 22 21 42 42 H 1.09002 * 113.61387 * 105.46352 * 23 22 21 43 43 H 1.08997 * 113.61155 * 270.88172 * 24 23 22 44 44 H 1.08992 * 113.68972 * 139.98721 * 24 23 22 45 45 H 1.08996 * 113.62183 * 254.53742 * 25 22 21 46 46 H 1.09001 * 113.60928 * 25.44039 * 25 22 21 47 47 H 1.08001 * 119.92797 * 179.97438 * 26 21 20 48 48 H 1.07998 * 120.07228 * 179.97438 * 27 26 21 49 49 H 1.08998 * 110.36548 * 274.74830 * 28 9 7 50 50 H 1.08998 * 110.36594 * 37.07039 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5993 1.9878 -1.3952 5 1 1.4008 2.6797 0.5961 6 1 3.4934 1.4714 0.7990 7 6 2.0103 -1.2022 0.0005 8 1 1.5584 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2131 -1.3325 11 6 5.3064 -0.7387 -1.7439 12 6 5.1422 -2.2778 -1.6365 13 8 4.5341 -2.8114 -2.8144 14 6 6.4865 -2.9549 -1.3620 15 7 6.2930 -4.4041 -1.2677 16 6 7.3462 -5.2103 -1.0283 17 8 8.4563 -4.7351 -0.8901 18 6 7.1509 -6.6727 -0.9326 19 6 5.8764 -7.2210 -1.0840 20 6 5.7017 -8.5868 -0.9980 21 6 6.7850 -9.4117 -0.7520 22 6 6.5858 -10.9022 -0.6541 23 6 5.5456 -11.4513 -1.6447 24 6 5.0650 -12.3703 -0.5093 25 6 5.6227 -11.3226 0.4686 26 6 8.0503 -8.8741 -0.5962 27 6 8.2395 -7.5104 -0.6848 28 6 4.1988 -2.4031 -0.4114 29 1 -0.4850 -0.8368 0.0739 30 1 3.3209 -0.0014 -2.2215 31 1 4.0226 0.6904 -0.7322 32 1 5.5419 -0.4465 -2.7672 33 1 6.0722 -0.3835 -1.0543 34 1 4.4112 -3.7704 -2.7937 35 1 7.1778 -2.7332 -2.1750 36 1 6.8968 -2.5810 -0.4239 37 1 5.4070 -4.7833 -1.3776 38 1 5.0293 -6.5778 -1.2712 39 1 4.7166 -9.0127 -1.1187 40 1 7.5250 -11.4556 -0.6536 41 1 4.8045 -10.7138 -1.9530 42 1 5.9845 -11.9887 -2.4854 43 1 5.5878 -13.3259 -0.4702 44 1 3.9815 -12.4782 -0.4622 45 1 6.1236 -11.7561 1.3342 46 1 4.9026 -10.5499 0.7381 47 1 8.8917 -9.5234 -0.4040 48 1 9.2276 -7.0920 -0.5626 49 1 4.7659 -2.3272 0.5164 50 1 3.6537 -3.3463 -0.4477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724399261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:37 Heat of formation + Delta-G solvation = -8.700359 kcal Electronic energy + Delta-G solvation = -29683.287109 eV Core-core repulsion = 25676.800443 eV Total energy + Delta-G solvation = -4006.486666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.74508 -39.85188 -38.78737 -37.63503 -35.46849 -34.32778 -32.43715 -31.85092 -31.25763 -29.97902 -28.68528 -26.70703 -26.05715 -25.52500 -23.47620 -23.07469 -22.49448 -21.00353 -20.43589 -20.18957 -19.54518 -18.59671 -17.49596 -16.86436 -16.62429 -15.96254 -15.77596 -15.50525 -15.28913 -15.00654 -14.83726 -14.56771 -14.14768 -13.85217 -13.79785 -13.59240 -13.46879 -13.27088 -13.07400 -12.97481 -12.89450 -12.38941 -12.36156 -12.12275 -11.85209 -11.52069 -11.36649 -11.21276 -11.02701 -10.93265 -10.88005 -10.77842 -10.67214 -10.33059 -10.06498 -9.83409 -9.54160 -9.32866 -9.29587 -9.16770 -8.96851 -8.42595 -7.11085 -6.34412 -3.19173 0.52928 1.04634 2.62554 2.93545 3.43373 3.51320 3.54855 3.69283 4.12844 4.13985 4.25267 4.28388 4.41186 4.48458 4.52820 4.59840 4.60183 4.61322 4.75485 4.89240 4.99925 5.05674 5.10490 5.17511 5.23991 5.30109 5.32552 5.42362 5.44724 5.50224 5.51595 5.60516 5.64504 5.67519 5.71569 5.81040 5.93333 5.97633 6.01006 6.05694 6.10916 6.17745 6.24834 6.28451 6.33005 6.54235 6.56188 6.80181 7.26067 7.64841 7.77142 8.01850 8.32083 9.01948 9.57595 10.23831 11.14179 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.002270 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.238590 B =12332.031528 C =13631.633037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.069 2.931 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.112 4.112 12 C 0.102 3.898 13 O -0.535 6.535 14 C 0.104 3.896 15 N -0.722 5.722 16 C 0.560 3.440 17 O -0.538 6.538 18 C -0.138 4.138 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.046 4.046 22 C -0.079 4.079 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.056 4.056 28 C 0.116 3.884 29 H 0.262 0.738 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.365 0.635 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.398 0.602 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.128 0.872 48 H 0.136 0.864 49 H 0.031 0.969 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.466 -23.329 -3.073 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.903 3.097 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.458 4.458 8 H 0.093 0.907 9 N -0.329 5.329 10 C -0.005 4.005 11 C -0.151 4.151 12 C 0.059 3.941 13 O -0.339 6.339 14 C -0.020 4.020 15 N -0.375 5.375 16 C 0.347 3.653 17 O -0.416 6.416 18 C -0.141 4.141 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.047 4.047 22 C -0.097 4.097 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.169 4.169 26 C -0.144 4.144 27 C -0.075 4.075 28 C -0.011 4.011 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.211 0.789 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.146 0.854 48 H 0.154 0.846 49 H 0.049 0.951 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.946 -20.671 -3.169 26.299 hybrid contribution -0.229 -2.405 0.313 2.436 sum 15.718 -23.076 -2.856 28.066 Atomic orbital electron populations 1.70927 1.05828 1.29966 1.48996 1.25796 0.96299 1.00886 0.98983 0.83717 0.73735 0.75983 0.76311 1.21997 1.22728 1.22124 1.19973 0.89113 0.97157 1.39602 0.90725 1.44656 1.14190 1.14040 1.60047 1.21641 0.91346 0.92361 0.95149 1.22569 0.98731 0.91348 1.02419 1.22732 0.89903 0.94708 0.86710 1.86640 1.83129 1.25441 1.38679 1.22031 0.98020 0.78867 1.03086 1.45866 1.10784 1.07632 1.73234 1.18261 0.84342 0.86276 0.76383 1.90769 1.24090 1.76707 1.50013 1.19929 0.94702 0.92926 1.06505 1.21314 0.95942 0.95525 0.97226 1.20942 0.99044 0.92874 1.01326 1.19970 0.93201 0.95206 0.96284 1.21638 0.98838 0.91221 0.98044 1.23050 0.98238 0.99141 0.96769 1.22843 1.01214 0.97662 0.96419 1.22995 0.98386 0.98902 0.96569 1.21039 0.96899 0.94781 1.01664 1.21264 0.98813 0.92776 0.94684 1.22203 0.91607 0.93113 0.94150 0.92723 0.93651 0.95325 0.89987 0.89893 0.78904 0.90396 0.90023 0.76661 0.85543 0.85285 0.88296 0.89499 0.91181 0.90102 0.91160 0.91182 0.89650 0.85430 0.84634 0.95148 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.81 13.70 55.49 0.76 -28.05 16 2 C -0.02 -0.56 5.43 -17.43 -0.09 -0.65 16 3 Si 1.07 27.13 24.66 -169.99 -4.19 22.93 16 4 H -0.29 -7.02 6.76 56.52 0.38 -6.63 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.29 -7.09 6.71 56.52 0.38 -6.71 16 7 C -0.33 -9.51 10.43 -15.06 -0.16 -9.67 16 8 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 9 N -0.60 -14.77 3.29 -169.93 -0.56 -15.33 16 10 C 0.12 2.66 4.94 -3.06 -0.02 2.64 16 11 C -0.11 -1.89 6.15 -24.89 -0.15 -2.05 16 12 C 0.10 1.60 0.97 -88.35 -0.09 1.52 16 13 O -0.53 -8.48 13.21 -35.23 -0.47 -8.95 16 14 C 0.10 1.39 4.88 -4.04 -0.02 1.37 16 15 N -0.72 -8.54 5.15 -61.25 -0.32 -8.86 16 16 C 0.56 7.38 7.77 -12.33 -0.10 7.28 16 17 O -0.54 -8.84 16.35 5.32 0.09 -8.75 16 18 C -0.14 -1.50 5.87 -104.97 -0.62 -2.12 16 19 C -0.08 -0.73 9.54 -39.19 -0.37 -1.10 16 20 C -0.12 -0.99 8.58 -39.64 -0.34 -1.33 16 21 C -0.05 -0.36 5.30 -104.53 -0.55 -0.91 16 22 C -0.08 -0.47 3.98 -90.96 -0.36 -0.83 16 23 C -0.13 -0.73 7.45 -25.92 -0.19 -0.92 16 24 C -0.14 -0.71 8.08 -25.92 -0.21 -0.92 16 25 C -0.13 -0.74 7.55 -25.92 -0.20 -0.94 16 26 C -0.13 -1.03 9.69 -39.64 -0.38 -1.42 16 27 C -0.06 -0.57 9.60 -39.19 -0.38 -0.95 16 28 C 0.12 2.23 6.23 -2.40 -0.01 2.21 16 29 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 30 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 31 H 0.03 0.67 3.77 -51.93 -0.20 0.47 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.36 4.31 7.69 45.56 0.35 4.66 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 37 H 0.40 3.89 5.31 -40.82 -0.22 3.67 16 38 H 0.13 0.92 6.41 -52.49 -0.34 0.58 16 39 H 0.13 0.82 6.64 -52.49 -0.35 0.47 16 40 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.09 0.47 6.30 -51.93 -0.33 0.15 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 47 H 0.13 0.78 8.05 -52.49 -0.42 0.36 16 48 H 0.14 1.38 7.65 -52.49 -0.40 0.98 16 49 H 0.03 0.59 7.99 -51.93 -0.41 0.17 16 50 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -35.44 392.70 -9.96 -45.40 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.95 Total: 4.46 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -4.24 Total: -8.79 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.11 Total: -52.23 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.38 Total: -17.70 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: -4.19 Total: 22.93 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.44 -9.96 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724399261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.704 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds