Wall clock time and date at job start Wed Apr 1 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00430 * 2 1 4 4 H 1.48502 * 109.47022 * 265.20181 * 3 2 1 5 5 H 1.48492 * 109.46735 * 25.20192 * 3 2 1 6 6 H 1.48498 * 109.47060 * 145.20133 * 3 2 1 7 7 C 1.38815 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99530 * 333.00194 * 7 2 1 9 9 N 1.36933 * 120.00279 * 152.99416 * 7 2 1 10 10 C 1.47018 * 125.64791 * 349.70283 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02164 * 10 9 7 12 12 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 13 13 O 1.42896 * 111.00123 * 82.60950 * 12 11 10 14 14 C 1.53004 * 111.00499 * 206.42418 * 12 11 10 15 15 N 1.46503 * 109.46728 * 180.02562 * 14 12 11 16 16 C 1.34776 * 119.99433 * 180.02562 * 15 14 12 17 17 O 1.21549 * 120.00344 * 0.02562 * 16 15 14 18 18 C 1.47851 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.39569 * 120.14451 * 359.72529 * 18 16 15 20 20 C 1.37959 * 119.85500 * 179.78583 * 19 18 16 21 21 C 1.38361 * 120.14278 * 0.49203 * 20 19 18 22 22 C 1.50694 * 119.85102 * 179.76470 * 21 20 19 23 23 C 1.53781 * 113.62140 * 37.47320 * 22 21 20 24 24 C 1.53780 * 87.08317 * 220.01806 * 23 22 21 25 25 C 1.53777 * 113.61629 * 299.96953 * 22 21 20 26 26 C 1.38361 * 120.29085 * 359.73456 * 21 20 19 27 27 C 1.37959 * 120.14561 * 0.02775 * 26 21 20 28 28 C 1.47432 * 125.64697 * 169.39206 * 9 7 2 29 29 H 0.96998 * 120.00029 * 185.04640 * 1 2 3 30 30 H 1.08994 * 109.88300 * 300.43777 * 10 9 7 31 31 H 1.09004 * 109.88225 * 61.60548 * 10 9 7 32 32 H 1.08996 * 110.72115 * 140.55445 * 11 10 9 33 33 H 1.09006 * 110.71987 * 263.82833 * 11 10 9 34 34 H 0.96704 * 113.99761 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47401 * 300.00046 * 14 12 11 36 36 H 1.09000 * 109.47052 * 60.00364 * 14 12 11 37 37 H 0.96996 * 120.00618 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.07318 * 359.97438 * 19 18 16 39 39 H 1.07996 * 119.92713 * 180.22960 * 20 19 18 40 40 H 1.09007 * 112.84784 * 168.78102 * 22 21 20 41 41 H 1.09000 * 113.60776 * 334.56793 * 23 22 21 42 42 H 1.09002 * 113.61387 * 105.46352 * 23 22 21 43 43 H 1.08997 * 113.61155 * 270.88172 * 24 23 22 44 44 H 1.08992 * 113.68972 * 139.98721 * 24 23 22 45 45 H 1.08996 * 113.62183 * 254.53742 * 25 22 21 46 46 H 1.09001 * 113.60928 * 25.44039 * 25 22 21 47 47 H 1.08001 * 119.92797 * 179.97438 * 26 21 20 48 48 H 1.07998 * 120.07228 * 179.97438 * 27 26 21 49 49 H 1.08998 * 110.36548 * 274.74830 * 28 9 7 50 50 H 1.08998 * 110.36594 * 37.07039 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5993 1.9878 -1.3952 5 1 1.4008 2.6797 0.5961 6 1 3.4934 1.4714 0.7990 7 6 2.0103 -1.2022 0.0005 8 1 1.5584 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2131 -1.3325 11 6 5.3064 -0.7387 -1.7439 12 6 5.1422 -2.2778 -1.6365 13 8 4.5341 -2.8114 -2.8144 14 6 6.4865 -2.9549 -1.3620 15 7 6.2930 -4.4041 -1.2677 16 6 7.3462 -5.2103 -1.0283 17 8 8.4563 -4.7351 -0.8901 18 6 7.1509 -6.6727 -0.9326 19 6 5.8764 -7.2210 -1.0840 20 6 5.7017 -8.5868 -0.9980 21 6 6.7850 -9.4117 -0.7520 22 6 6.5858 -10.9022 -0.6541 23 6 5.5456 -11.4513 -1.6447 24 6 5.0650 -12.3703 -0.5093 25 6 5.6227 -11.3226 0.4686 26 6 8.0503 -8.8741 -0.5962 27 6 8.2395 -7.5104 -0.6848 28 6 4.1988 -2.4031 -0.4114 29 1 -0.4850 -0.8368 0.0739 30 1 3.3209 -0.0014 -2.2215 31 1 4.0226 0.6904 -0.7322 32 1 5.5419 -0.4465 -2.7672 33 1 6.0722 -0.3835 -1.0543 34 1 4.4112 -3.7704 -2.7937 35 1 7.1778 -2.7332 -2.1750 36 1 6.8968 -2.5810 -0.4239 37 1 5.4070 -4.7833 -1.3776 38 1 5.0293 -6.5778 -1.2712 39 1 4.7166 -9.0127 -1.1187 40 1 7.5250 -11.4556 -0.6536 41 1 4.8045 -10.7138 -1.9530 42 1 5.9845 -11.9887 -2.4854 43 1 5.5878 -13.3259 -0.4702 44 1 3.9815 -12.4782 -0.4622 45 1 6.1236 -11.7561 1.3342 46 1 4.9026 -10.5499 0.7381 47 1 8.8917 -9.5234 -0.4040 48 1 9.2276 -7.0920 -0.5626 49 1 4.7659 -2.3272 0.5164 50 1 3.6537 -3.3463 -0.4477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724399261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:36 Heat of formation + Delta-G solvation = -33.549966 kcal Electronic energy + Delta-G solvation = -29684.364669 eV Core-core repulsion = 25676.800443 eV Total energy + Delta-G solvation = -4007.564226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.57601 -40.73291 -39.96846 -38.32865 -37.02800 -35.44435 -34.40057 -32.69876 -31.93422 -31.57893 -30.10736 -27.85410 -26.62189 -26.46894 -24.94373 -23.74610 -23.37284 -22.66136 -21.53686 -21.47194 -20.03073 -19.64073 -19.42711 -17.88520 -17.54999 -17.20507 -16.68439 -16.52256 -16.31601 -16.18403 -15.88105 -15.54155 -15.44369 -15.21125 -15.01528 -14.78091 -14.57331 -14.30665 -14.13243 -13.87798 -13.59996 -13.43026 -13.32666 -13.13905 -12.93268 -12.91688 -12.77230 -12.70127 -12.24739 -12.12864 -11.91963 -11.65294 -11.48903 -11.31462 -11.28333 -11.22047 -11.07450 -10.94163 -10.57472 -10.32604 -9.98952 -9.66803 -9.17783 -8.65267 -5.43197 -0.21604 0.38052 1.39245 1.50180 1.69287 1.75063 1.96136 2.50940 2.79807 2.96839 3.05221 3.27935 3.44793 3.57313 3.65385 3.68328 3.76647 3.78847 3.86685 3.89399 3.98574 4.08558 4.21948 4.27600 4.35135 4.38478 4.44961 4.55060 4.67217 4.69237 4.78488 4.80038 4.81992 4.85104 4.88306 4.89859 4.99649 5.02963 5.11276 5.12903 5.16260 5.19932 5.25341 5.29503 5.34865 5.50911 5.54970 5.69603 5.88954 6.08981 6.32097 6.67132 6.80906 7.04001 7.46224 8.10561 8.83591 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.002270 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.238590 B =12332.031528 C =13631.633037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.077 4.077 3 Si 1.109 2.891 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.320 4.320 8 H 0.047 0.953 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.107 4.107 12 C 0.121 3.879 13 O -0.549 6.549 14 C 0.116 3.884 15 N -0.714 5.714 16 C 0.560 3.440 17 O -0.576 6.576 18 C -0.158 4.158 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.043 4.043 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.069 4.069 28 C 0.109 3.891 29 H 0.249 0.751 30 H 0.023 0.977 31 H 0.027 0.973 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.382 0.618 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.408 0.592 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.148 0.852 48 H 0.128 0.872 49 H 0.038 0.962 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.435 -24.707 -3.729 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.272 4.272 3 Si 0.936 3.064 4 H -0.199 1.199 5 H -0.234 1.234 6 H -0.200 1.200 7 C -0.448 4.448 8 H 0.065 0.935 9 N -0.351 5.351 10 C -0.015 4.015 11 C -0.145 4.145 12 C 0.079 3.921 13 O -0.356 6.356 14 C -0.008 4.008 15 N -0.367 5.367 16 C 0.349 3.651 17 O -0.457 6.457 18 C -0.161 4.161 19 C -0.101 4.101 20 C -0.145 4.145 21 C -0.043 4.043 22 C -0.098 4.098 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.171 4.171 26 C -0.145 4.145 27 C -0.088 4.088 28 C -0.016 4.016 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.231 0.769 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.245 0.755 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.166 0.834 48 H 0.146 0.854 49 H 0.056 0.944 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.934 -22.104 -3.843 28.723 hybrid contribution -0.872 -2.181 0.528 2.408 sum 17.062 -24.285 -3.315 29.864 Atomic orbital electron populations 1.71035 1.07015 1.29204 1.52387 1.27003 0.96358 1.04358 0.99450 0.83212 0.73218 0.72324 0.77601 1.19906 1.23397 1.20006 1.19903 0.91008 0.95963 1.37930 0.93521 1.44747 1.13869 1.16369 1.60142 1.21774 0.93841 0.92089 0.93793 1.22625 0.96014 0.91622 1.04262 1.22456 0.89945 0.94671 0.85039 1.86611 1.83263 1.27250 1.38433 1.21824 0.96269 0.79392 1.03344 1.45761 1.11181 1.07046 1.72757 1.18594 0.83815 0.87207 0.75454 1.90744 1.25499 1.77488 1.51973 1.19855 0.95865 0.91667 1.08701 1.21487 0.95573 0.96282 0.96756 1.21196 1.00015 0.92546 1.00756 1.20256 0.92904 0.96300 0.94854 1.21729 0.99601 0.89995 0.98459 1.23068 0.98014 0.99232 0.96950 1.22841 1.01398 0.97774 0.95725 1.23003 0.98254 0.99038 0.96770 1.21271 0.97948 0.94208 1.01052 1.21341 0.98440 0.93691 0.95354 1.22447 0.91516 0.91411 0.96256 0.94171 0.95886 0.95540 0.87966 0.87188 0.76906 0.89635 0.90064 0.75465 0.84120 0.83609 0.87195 0.89596 0.90730 0.89276 0.91046 0.90848 0.90262 0.83386 0.85416 0.94425 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.70 13.70 21.65 0.30 -61.40 16 2 C -0.08 -4.66 5.43 84.86 0.46 -4.20 16 3 Si 1.11 54.77 24.66 68.60 1.69 56.47 16 4 H -0.27 -12.48 6.76 99.48 0.67 -11.81 16 5 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.27 -12.46 6.71 99.48 0.67 -11.80 16 7 C -0.32 -18.63 10.43 84.03 0.88 -17.75 16 8 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.62 -30.15 3.29 -691.53 -2.27 -32.42 16 10 C 0.11 4.67 4.94 86.73 0.43 5.10 16 11 C -0.11 -3.27 6.15 31.78 0.20 -3.08 16 12 C 0.12 3.50 0.97 -9.32 -0.01 3.49 16 13 O -0.55 -16.05 13.21 -148.98 -1.97 -18.02 16 14 C 0.12 2.80 4.88 86.38 0.42 3.22 16 15 N -0.71 -15.52 5.15 -465.96 -2.40 -17.92 16 16 C 0.56 14.18 7.77 86.79 0.67 14.85 16 17 O -0.58 -18.62 16.35 -3.87 -0.06 -18.69 16 18 C -0.16 -3.30 5.87 -20.09 -0.12 -3.42 16 19 C -0.08 -1.34 9.54 22.52 0.21 -1.13 16 20 C -0.13 -1.78 8.58 22.23 0.19 -1.59 16 21 C -0.04 -0.58 5.30 -19.81 -0.10 -0.68 16 22 C -0.08 -0.76 3.98 -11.02 -0.04 -0.81 16 23 C -0.14 -1.16 7.45 31.12 0.23 -0.92 16 24 C -0.14 -1.08 8.08 31.12 0.25 -0.83 16 25 C -0.13 -1.24 7.55 31.12 0.23 -1.01 16 26 C -0.13 -1.88 9.69 22.23 0.22 -1.67 16 27 C -0.07 -1.36 9.60 22.53 0.22 -1.14 16 28 C 0.11 4.02 6.23 86.93 0.54 4.56 16 29 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 30 H 0.02 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.03 1.17 3.77 -2.38 -0.01 1.16 16 32 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.11 2.78 8.04 -2.38 -0.02 2.76 16 34 H 0.38 8.06 7.69 -74.05 -0.57 7.49 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.41 7.11 5.31 -92.71 -0.49 6.61 16 38 H 0.14 1.75 6.41 -2.91 -0.02 1.74 16 39 H 0.15 1.50 6.64 -2.91 -0.02 1.48 16 40 H 0.11 0.83 8.09 -2.38 -0.02 0.81 16 41 H 0.09 0.75 6.30 -2.39 -0.02 0.73 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.84 7.72 -2.39 -0.02 0.82 16 47 H 0.15 1.49 8.05 -2.91 -0.02 1.47 16 48 H 0.13 2.63 7.65 -2.91 -0.02 2.60 16 49 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 50 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.18 392.70 -0.04 -78.22 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.21 Total: 20.76 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.88 Total: -7.00 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.38 Total: -111.74 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -2.03 Total: -36.71 kcal Atomic # 14 Polarization: 54.77 SS G_CDS: 1.69 Total: 56.47 kcal Total: -78.18 -0.04 -78.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724399261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.671 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds