Wall clock time and date at job start Wed Apr 1 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48499 * 109.47304 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.47014 * 29.99982 * 3 2 1 6 6 H 1.48497 * 109.46732 * 149.99892 * 3 2 1 7 7 C 1.38814 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64730 * 359.95592 * 9 7 2 11 11 C 1.54907 * 104.82993 * 204.16411 * 10 9 7 12 12 C 1.55149 * 101.58625 * 322.99081 * 11 10 9 13 13 O 1.42903 * 110.87520 * 277.06901 * 12 11 10 14 14 C 1.52998 * 110.72126 * 153.86181 * 12 11 10 15 15 N 1.46508 * 109.47135 * 190.02427 * 14 12 11 16 16 C 1.34780 * 119.99852 * 179.97438 * 15 14 12 17 17 O 1.21557 * 120.00061 * 0.02562 * 16 15 14 18 18 C 1.47845 * 119.99555 * 180.02562 * 16 15 14 19 19 C 1.39575 * 120.13807 * 180.02562 * 18 16 15 20 20 C 1.37966 * 119.85100 * 179.97438 * 19 18 16 21 21 C 1.38360 * 120.14194 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.85407 * 179.97438 * 21 20 19 23 23 C 1.53784 * 113.61333 * 39.15829 * 22 21 20 24 24 C 1.53949 * 87.02395 * 220.05042 * 23 22 21 25 25 C 1.53785 * 113.61308 * 301.55428 * 22 21 20 26 26 C 1.38356 * 120.29558 * 0.02562 * 21 20 19 27 27 C 1.37965 * 120.14370 * 359.97438 * 26 21 20 28 28 C 1.47018 * 125.65101 * 179.97438 * 9 7 2 29 29 H 0.96997 * 120.00328 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36521 * 323.00586 * 10 9 7 31 31 H 1.09004 * 110.36822 * 85.32968 * 10 9 7 32 32 H 1.09003 * 111.00441 * 204.91642 * 11 10 9 33 33 H 1.09004 * 111.00614 * 81.06738 * 11 10 9 34 34 H 0.96696 * 114.00152 * 177.45043 * 13 12 11 35 35 H 1.08996 * 109.46951 * 70.03017 * 14 12 11 36 36 H 1.08996 * 109.47668 * 310.02607 * 14 12 11 37 37 H 0.97002 * 119.99932 * 0.02562 * 15 14 12 38 38 H 1.07998 * 120.08057 * 359.70005 * 19 18 16 39 39 H 1.08000 * 119.93065 * 180.02562 * 20 19 18 40 40 H 1.08994 * 112.85082 * 170.35773 * 22 21 20 41 41 H 1.09003 * 113.61358 * 334.57249 * 23 22 21 42 42 H 1.09000 * 113.61019 * 105.46870 * 23 22 21 43 43 H 1.08998 * 113.53959 * 270.81628 * 24 23 22 44 44 H 1.09001 * 113.74277 * 139.94244 * 24 23 22 45 45 H 1.08997 * 113.61602 * 254.52483 * 25 22 21 46 46 H 1.09005 * 113.61189 * 25.43751 * 25 22 21 47 47 H 1.08001 * 119.93243 * 180.02562 * 26 21 20 48 48 H 1.08003 * 120.07174 * 180.02562 * 27 26 21 49 49 H 1.08999 * 109.88133 * 59.48465 * 28 9 7 50 50 H 1.08999 * 110.01187 * 298.39371 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1415 -2.5331 -0.0013 11 6 -0.4015 -3.9324 0.6102 12 6 0.7784 -4.7524 0.0248 13 8 0.4760 -5.2083 -1.2954 14 6 1.1233 -5.9315 0.9368 15 7 2.3790 -6.5415 0.4924 16 6 2.8823 -7.6040 1.1515 17 8 2.2941 -8.0564 2.1143 18 6 4.1498 -8.2192 0.7034 19 6 4.6734 -9.3199 1.3834 20 6 5.8563 -9.8897 0.9598 21 6 6.5230 -9.3726 -0.1368 22 6 7.8150 -9.9998 -0.5936 23 6 7.8191 -11.5351 -0.5063 24 6 9.2708 -11.4227 -0.0064 25 6 8.9097 -10.0114 0.4865 26 6 6.0094 -8.2817 -0.8153 27 6 4.8273 -7.7025 -0.4020 28 6 1.9318 -3.7274 -0.0028 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5992 -1.7589 0.6145 31 1 -0.5276 -2.4866 -1.0197 32 1 -1.3589 -4.3328 0.2769 33 1 -0.3516 -3.8986 1.6986 34 1 1.1977 -5.6927 -1.7191 35 1 0.3242 -6.6714 0.8920 36 1 1.2340 -5.5778 1.9618 37 1 2.8486 -6.1803 -0.2756 38 1 4.1560 -9.7220 2.2419 39 1 6.2624 -10.7417 1.4847 40 1 8.1548 -9.6162 -1.5555 41 1 7.1301 -11.9319 0.2393 42 1 7.7265 -12.0276 -1.4743 43 1 10.0091 -11.4294 -0.8083 44 1 9.5131 -12.1174 0.7978 45 1 9.6963 -9.2758 0.3189 46 1 8.5193 -9.9911 1.5040 47 1 6.5344 -7.8831 -1.6708 48 1 4.4272 -6.8512 -0.9328 49 1 2.5588 -3.8513 0.8801 50 1 2.5293 -3.8657 -0.9039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724399262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:39 Heat of formation + Delta-G solvation = -35.539129 kcal Electronic energy + Delta-G solvation = -29560.194718 eV Core-core repulsion = 25552.544235 eV Total energy + Delta-G solvation = -4007.650483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.54753 -40.67499 -39.86150 -38.29758 -36.83672 -35.49657 -34.01395 -32.54943 -32.00326 -31.29566 -29.71104 -27.68890 -26.78376 -26.45293 -25.24723 -23.78795 -23.35727 -22.28109 -21.39787 -21.36084 -20.02340 -19.49285 -18.89028 -17.84676 -17.26235 -17.03989 -16.76085 -16.50540 -16.22563 -15.97577 -15.77273 -15.56948 -15.34391 -15.05036 -14.89173 -14.56187 -14.34177 -14.15347 -13.94288 -13.83609 -13.66880 -13.32003 -13.30106 -12.94537 -12.89969 -12.78022 -12.75312 -12.39301 -12.11242 -12.09179 -12.02228 -11.82006 -11.64670 -11.46337 -11.29839 -11.20906 -11.03411 -10.89576 -10.74959 -10.31101 -9.96630 -9.64830 -8.91902 -7.78391 -5.23581 -0.19584 0.40323 1.46646 1.48568 1.57261 1.76976 1.99678 2.48187 2.81930 3.13277 3.30573 3.39196 3.58126 3.67400 3.68717 3.78093 3.88087 3.88454 3.92383 3.97159 4.00071 4.10462 4.21748 4.38088 4.45505 4.49735 4.58690 4.63714 4.76410 4.80765 4.83853 4.89735 4.92426 4.92843 4.97108 5.04626 5.05232 5.12967 5.13712 5.22319 5.26507 5.31033 5.37777 5.45361 5.52376 5.60046 5.71571 5.78476 5.91157 6.28019 6.36905 6.75974 7.06586 7.08344 7.75274 8.39047 9.23597 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002168 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.850265 B =12912.422762 C =14195.909996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.160 3.840 11 C -0.120 4.120 12 C 0.125 3.875 13 O -0.553 6.553 14 C 0.118 3.882 15 N -0.712 5.712 16 C 0.557 3.443 17 O -0.579 6.579 18 C -0.158 4.158 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.043 4.043 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.127 4.127 27 C -0.081 4.081 28 C 0.112 3.888 29 H 0.247 0.753 30 H 0.076 0.924 31 H -0.014 1.014 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.385 0.615 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.151 0.849 48 H 0.143 0.857 49 H 0.036 0.964 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.965 -24.356 -2.207 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.348 5.348 10 C 0.035 3.965 11 C -0.159 4.159 12 C 0.084 3.916 13 O -0.360 6.360 14 C -0.006 4.006 15 N -0.365 5.365 16 C 0.347 3.653 17 O -0.461 6.461 18 C -0.161 4.161 19 C -0.089 4.089 20 C -0.143 4.143 21 C -0.044 4.044 22 C -0.098 4.098 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.171 4.171 26 C -0.144 4.144 27 C -0.100 4.100 28 C -0.013 4.013 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.004 0.996 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.169 0.831 48 H 0.160 0.840 49 H 0.054 0.946 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.940 -24.149 -1.405 28.969 hybrid contribution 0.588 1.188 -0.430 1.394 sum 16.529 -22.961 -1.834 28.351 Atomic orbital electron populations 1.70046 1.06270 1.25093 1.58398 1.25678 0.96664 1.01134 1.02660 0.85024 0.77617 0.78928 0.77415 1.21373 1.22047 1.19294 1.19450 0.91049 0.83597 1.42724 0.89881 1.44686 1.02539 1.00735 1.86831 1.21664 0.84247 0.94136 0.96496 1.22910 0.97335 0.95430 1.00241 1.22202 0.95590 0.90973 0.82877 1.86596 1.44434 1.76409 1.28587 1.21831 0.86202 0.94395 0.98201 1.45788 1.25082 1.31684 1.33926 1.18677 0.85058 0.79542 0.82043 1.90742 1.62381 1.63915 1.29022 1.19848 0.95993 1.00073 1.00157 1.21309 0.95494 0.93674 0.98436 1.21136 0.94611 1.01098 0.97501 1.20264 0.95838 0.94374 0.93883 1.21738 0.91400 0.96386 1.00306 1.23092 0.97586 0.94260 1.02320 1.22868 0.96694 0.96730 1.01325 1.23008 0.97710 0.98137 0.98255 1.21322 0.95748 0.96226 1.01131 1.21521 0.95061 0.99053 0.94365 1.22115 0.94766 0.85624 0.98834 0.94294 0.90635 0.99622 0.89507 0.89544 0.76602 0.90069 0.90997 0.75239 0.85634 0.83729 0.87154 0.89713 0.90714 0.89321 0.90891 0.90885 0.90219 0.83087 0.83970 0.94649 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.31 10.27 84.03 0.86 -12.44 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.76 3.39 -691.99 -2.35 -34.11 16 10 C 0.16 8.03 5.88 86.85 0.51 8.54 16 11 C -0.12 -4.57 6.26 31.98 0.20 -4.37 16 12 C 0.13 4.11 0.93 -9.61 -0.01 4.10 16 13 O -0.55 -17.22 13.10 -148.98 -1.95 -19.17 16 14 C 0.12 3.35 4.80 86.38 0.41 3.76 16 15 N -0.71 -17.29 5.08 -465.96 -2.37 -19.66 16 16 C 0.56 15.35 7.77 86.79 0.67 16.03 16 17 O -0.58 -20.28 16.35 -3.89 -0.06 -20.34 16 18 C -0.16 -3.51 5.87 -20.09 -0.12 -3.62 16 19 C -0.07 -1.46 9.60 22.53 0.22 -1.24 16 20 C -0.13 -1.96 8.51 22.23 0.19 -1.77 16 21 C -0.04 -0.60 5.30 -19.81 -0.10 -0.70 16 22 C -0.08 -0.78 3.97 -11.01 -0.04 -0.82 16 23 C -0.14 -1.14 7.47 31.18 0.23 -0.91 16 24 C -0.14 -1.01 8.09 31.18 0.25 -0.76 16 25 C -0.13 -1.23 7.54 31.13 0.23 -0.99 16 26 C -0.13 -1.78 9.69 22.23 0.22 -1.57 16 27 C -0.08 -1.38 9.54 22.53 0.21 -1.16 16 28 C 0.11 4.35 5.76 86.73 0.50 4.85 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.08 4.30 5.87 -2.39 -0.01 4.29 16 31 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.09 3.10 7.96 -2.38 -0.02 3.08 16 34 H 0.38 8.38 8.44 -74.06 -0.62 7.75 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 37 H 0.41 7.94 5.51 -92.71 -0.51 7.43 16 38 H 0.13 2.77 7.65 -2.91 -0.02 2.75 16 39 H 0.15 1.67 6.70 -2.91 -0.02 1.65 16 40 H 0.11 0.85 8.08 -2.39 -0.02 0.84 16 41 H 0.08 0.73 6.38 -2.39 -0.02 0.72 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.82 7.63 -2.38 -0.02 0.80 16 47 H 0.15 1.41 8.04 -2.91 -0.02 1.38 16 48 H 0.14 1.85 6.41 -2.91 -0.02 1.83 16 49 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 50 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 Total: -1.00 -73.58 397.37 0.25 -73.33 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.17 Total: 25.57 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 4.91 Total: 3.47 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.50 Total: -110.38 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.02 Total: -39.51 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.58 0.25 -73.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724399262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.794 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds