Wall clock time and date at job start Wed Apr 1 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47377 * 264.50709 * 3 2 1 5 5 H 1.48501 * 109.47363 * 24.51255 * 3 2 1 6 6 H 1.48501 * 109.46819 * 144.50660 * 3 2 1 7 7 C 1.38810 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99629 * 333.40862 * 7 2 1 9 9 N 1.36933 * 120.00649 * 153.41205 * 7 2 1 10 10 C 1.47423 * 125.65343 * 169.48661 * 9 7 2 11 11 C 1.54907 * 104.83071 * 155.91902 * 10 9 7 12 12 C 1.55152 * 101.58374 * 37.00998 * 11 10 9 13 13 O 1.42901 * 110.71945 * 83.03773 * 12 11 10 14 14 C 1.52999 * 110.72271 * 206.13077 * 12 11 10 15 15 N 1.46498 * 109.47315 * 179.97438 * 14 12 11 16 16 C 1.34777 * 120.00110 * 180.02562 * 15 14 12 17 17 O 1.21548 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.47843 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.39597 * 120.14555 * 324.84788 * 18 16 15 20 20 C 1.37943 * 119.85375 * 179.97438 * 19 18 16 21 21 C 1.38380 * 120.14549 * 0.02562 * 20 19 18 22 22 C 1.38342 * 120.29091 * 359.74936 * 21 20 19 23 23 C 1.37976 * 120.14403 * 0.50141 * 22 21 20 24 24 C 1.50703 * 120.07616 * 179.77143 * 23 22 21 25 25 C 1.53784 * 113.61451 * 304.79438 * 24 23 22 26 26 C 1.53780 * 87.08415 * 139.97521 * 25 24 23 27 27 C 1.53787 * 113.60961 * 42.28870 * 24 23 22 28 28 C 1.47021 * 125.64174 * 349.54459 * 9 7 2 29 29 H 0.97005 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36250 * 37.08380 * 10 9 7 31 31 H 1.09000 * 110.46059 * 274.80459 * 10 9 7 32 32 H 1.09003 * 111.00673 * 278.93677 * 11 10 9 33 33 H 1.08998 * 111.03486 * 155.10119 * 11 10 9 34 34 H 0.96701 * 114.00206 * 182.44190 * 13 12 11 35 35 H 1.09001 * 109.46813 * 60.00543 * 14 12 11 36 36 H 1.08999 * 109.47330 * 300.00735 * 14 12 11 37 37 H 0.97000 * 119.99867 * 0.02562 * 15 14 12 38 38 H 1.07999 * 120.07467 * 0.02562 * 19 18 16 39 39 H 1.07996 * 119.92440 * 180.02562 * 20 19 18 40 40 H 1.07995 * 119.85241 * 179.97438 * 21 20 19 41 41 H 1.07992 * 119.92913 * 180.25613 * 22 21 20 42 42 H 1.08996 * 112.90840 * 173.54094 * 24 23 22 43 43 H 1.09005 * 113.61121 * 25.42621 * 25 24 23 44 44 H 1.08995 * 113.61385 * 254.53155 * 25 24 23 45 45 H 1.09000 * 113.61070 * 89.11519 * 26 25 24 46 46 H 1.08998 * 113.61633 * 220.02110 * 26 25 24 47 47 H 1.08996 * 113.61171 * 105.47405 * 27 24 23 48 48 H 1.08994 * 113.61743 * 334.56773 * 27 24 23 49 49 H 1.08999 * 109.88666 * 61.59773 * 28 9 7 50 50 H 1.08998 * 109.88692 * 300.42519 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6137 1.9794 -1.3936 5 1 1.3945 2.6834 0.5809 6 1 3.4848 1.4764 0.8129 7 6 2.0102 -1.2021 -0.0005 8 1 1.5558 -2.0882 0.4178 9 7 3.2710 -1.2647 -0.5313 10 6 4.2006 -2.4020 -0.4058 11 6 5.1536 -2.2710 -1.6200 12 6 5.3166 -0.7315 -1.7235 13 8 6.3172 -0.2669 -0.8152 14 6 5.6558 -0.3182 -3.1570 15 7 5.8028 1.1379 -3.2236 16 6 6.1030 1.7320 -4.3955 17 8 6.2513 1.0598 -5.3973 18 6 6.2519 3.2014 -4.4625 19 6 5.4486 4.0243 -3.6711 20 6 5.5930 5.3945 -3.7381 21 6 6.5312 5.9538 -4.5877 22 6 7.3337 5.1438 -5.3711 23 6 7.1959 3.7720 -5.3175 24 6 8.0673 2.8913 -6.1755 25 6 7.9984 3.2290 -7.6742 26 6 9.5158 2.9838 -7.7190 27 6 9.5379 3.3385 -6.2228 28 6 3.9220 -0.2083 -1.3198 29 1 -0.4850 0.8401 -0.0004 30 1 3.6552 -3.3446 -0.4515 31 1 4.7620 -2.3341 0.5261 32 1 4.6952 -2.6768 -2.5220 33 1 6.1106 -2.7527 -1.4200 34 1 6.4318 0.6933 -0.8137 35 1 4.8542 -0.6329 -3.8252 36 1 6.5891 -0.7923 -3.4607 37 1 5.6841 1.6744 -2.4242 38 1 4.7162 3.5891 -3.0074 39 1 4.9724 6.0322 -3.1261 40 1 6.6400 7.0271 -4.6366 41 1 8.0669 5.5863 -6.0291 42 1 7.9403 1.8303 -5.9607 43 1 7.7169 4.2625 -7.8764 44 1 7.4225 2.5106 -8.2576 45 1 9.7848 1.9480 -7.9262 46 1 10.0549 3.6954 -8.3444 47 1 10.2050 2.7085 -5.6345 48 1 9.6774 4.4019 -6.0282 49 1 4.0248 0.6941 -0.7171 50 1 3.3334 0.0044 -2.2121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724425974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:44 Heat of formation + Delta-G solvation = -2.300312 kcal Electronic energy + Delta-G solvation = -30900.765901 eV Core-core repulsion = 26894.556762 eV Total energy + Delta-G solvation = -4006.209140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.87572 -39.55325 -38.51133 -37.81404 -35.43087 -34.29035 -32.38300 -31.68648 -31.33768 -30.02178 -28.67031 -26.30747 -25.79780 -25.55081 -24.18567 -23.36887 -22.03439 -20.92086 -20.46890 -20.10715 -19.33348 -18.42296 -17.17004 -16.80060 -16.64286 -16.08187 -15.83795 -15.45035 -15.17099 -14.85497 -14.56993 -14.50967 -14.27970 -13.92600 -13.73951 -13.53756 -13.37398 -12.99301 -12.91334 -12.71031 -12.67636 -12.26847 -12.18400 -12.10575 -11.96131 -11.70507 -11.47941 -11.30472 -10.93914 -10.89297 -10.64172 -10.61638 -10.51868 -10.41230 -10.31705 -9.80753 -9.69196 -9.34749 -9.25303 -9.11065 -8.89320 -8.73277 -7.18518 -6.00292 -3.24118 0.71591 1.08619 2.65918 3.00766 3.20140 3.36823 3.41370 3.51472 4.21082 4.35379 4.39424 4.45029 4.48752 4.52740 4.61574 4.69109 4.76967 4.81836 4.89091 4.92575 5.01128 5.11420 5.11632 5.21576 5.37137 5.46444 5.47736 5.56597 5.59695 5.61899 5.67039 5.74301 5.77248 5.82232 5.82855 5.91672 5.98829 6.06676 6.10836 6.15855 6.19325 6.21289 6.30916 6.38595 6.47902 6.54108 6.63249 6.76079 7.30629 7.58487 7.68334 8.06409 8.24359 8.76506 9.63277 10.09854 11.15733 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.003282 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.173459 B = 8529.598873 C = 9874.264207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.018 3.982 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.098 0.902 9 N -0.606 5.606 10 C 0.137 3.863 11 C -0.113 4.113 12 C 0.105 3.895 13 O -0.543 6.543 14 C 0.104 3.896 15 N -0.722 5.722 16 C 0.562 3.438 17 O -0.528 6.528 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.014 4.014 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.141 4.141 27 C -0.136 4.136 28 C 0.098 3.902 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.367 0.633 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.398 0.602 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.030 0.970 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.914 10.036 -11.936 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.115 0.885 9 N -0.333 5.333 10 C 0.011 3.989 11 C -0.152 4.152 12 C 0.063 3.937 13 O -0.348 6.348 14 C -0.020 4.020 15 N -0.374 5.374 16 C 0.350 3.650 17 O -0.406 6.406 18 C -0.134 4.134 19 C -0.105 4.105 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.144 4.144 23 C -0.015 4.015 24 C -0.108 4.108 25 C -0.163 4.163 26 C -0.178 4.178 27 C -0.173 4.173 28 C -0.028 4.028 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.214 0.786 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.048 0.952 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.805 8.946 -12.468 24.271 hybrid contribution 0.077 2.094 0.523 2.160 sum 18.881 11.040 -11.945 24.921 Atomic orbital electron populations 1.69901 1.05448 1.26533 1.52726 1.24806 0.95068 0.97292 1.00868 0.87035 0.79179 0.85345 0.77302 1.21556 1.23082 1.20621 1.18693 0.86603 0.96505 1.34981 0.88483 1.44736 1.14047 1.14042 1.60433 1.21592 0.90537 0.91981 0.94761 1.22753 1.00547 0.91203 1.00702 1.22531 0.87961 0.96874 0.86341 1.86577 1.58339 1.26330 1.63542 1.22076 1.02931 0.79510 0.97445 1.45929 1.71712 1.08605 1.11168 1.18254 0.76337 0.87328 0.83111 1.90716 1.49965 1.65530 1.34426 1.19800 1.00302 0.92753 1.00518 1.21403 0.97925 0.94028 0.97130 1.21117 0.99156 0.94685 0.99758 1.21320 0.94807 0.99994 0.95166 1.20950 1.00428 0.92625 1.00441 1.19779 0.94170 0.93752 0.93801 1.22001 0.93235 1.01193 0.94339 1.22899 0.96443 1.01715 0.95219 1.22807 0.96678 1.01827 0.96521 1.23062 0.95990 1.01391 0.96900 1.22328 0.91545 0.93100 0.95817 0.92729 0.92865 0.95109 0.89563 0.90119 0.78565 0.89802 0.90230 0.76756 0.85383 0.85329 0.85615 0.85459 0.85856 0.90271 0.91043 0.90064 0.91492 0.91404 0.90055 0.95250 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.97 55.49 0.78 -26.89 16 2 C 0.02 0.52 5.43 -17.43 -0.09 0.43 16 3 Si 0.88 21.91 24.29 -169.99 -4.13 17.78 16 4 H -0.29 -6.71 6.71 56.52 0.38 -6.33 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.28 -6.84 6.72 56.52 0.38 -6.46 16 7 C -0.24 -6.80 10.57 -15.06 -0.16 -6.96 16 8 H 0.10 2.87 8.06 -52.48 -0.42 2.45 16 9 N -0.61 -14.49 3.29 -170.07 -0.56 -15.05 16 10 C 0.14 2.67 7.23 -2.53 -0.02 2.65 16 11 C -0.11 -1.78 6.26 -24.59 -0.15 -1.94 16 12 C 0.10 1.70 0.92 -88.79 -0.08 1.61 16 13 O -0.54 -8.50 13.09 -35.23 -0.46 -8.96 16 14 C 0.10 1.50 4.74 -4.04 -0.02 1.48 16 15 N -0.72 -9.85 5.11 -61.25 -0.31 -10.16 16 16 C 0.56 8.16 7.10 -12.33 -0.09 8.07 16 17 O -0.53 -8.88 14.21 5.32 0.08 -8.80 16 18 C -0.13 -1.67 5.79 -104.97 -0.61 -2.28 16 19 C -0.09 -1.01 9.33 -39.18 -0.37 -1.37 16 20 C -0.13 -1.27 10.03 -39.64 -0.40 -1.67 16 21 C -0.09 -0.83 10.04 -39.49 -0.40 -1.22 16 22 C -0.13 -1.18 8.44 -39.64 -0.33 -1.51 16 23 C -0.01 -0.16 5.32 -104.22 -0.55 -0.72 16 24 C -0.09 -0.99 3.44 -90.95 -0.31 -1.30 16 25 C -0.13 -1.20 7.53 -25.92 -0.20 -1.39 16 26 C -0.14 -1.14 8.08 -25.91 -0.21 -1.35 16 27 C -0.14 -1.17 7.47 -25.91 -0.19 -1.37 16 28 C 0.10 2.04 3.98 -3.06 -0.01 2.03 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.37 4.61 7.78 45.56 0.35 4.97 16 35 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 4.91 6.43 -40.82 -0.26 4.64 16 38 H 0.13 1.49 7.59 -52.49 -0.40 1.09 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.92 6.73 -52.49 -0.35 0.57 16 42 H 0.12 1.65 5.26 -51.93 -0.27 1.38 16 43 H 0.08 0.68 7.40 -51.93 -0.38 0.30 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.61 6.57 -51.93 -0.34 0.27 16 49 H 0.03 0.66 3.69 -51.93 -0.19 0.47 16 50 H 0.05 1.08 7.42 -51.93 -0.39 0.70 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -33.59 388.80 -9.85 -43.44 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.90 Total: 9.57 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.19 Total: -6.80 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.10 Total: -52.10 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.39 Total: -17.76 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.13 Total: 17.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.59 -9.85 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724425974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.137 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds