Wall clock time and date at job start Wed Apr 1 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47377 * 264.50709 * 3 2 1 5 5 H 1.48501 * 109.47363 * 24.51255 * 3 2 1 6 6 H 1.48501 * 109.46819 * 144.50660 * 3 2 1 7 7 C 1.38810 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99629 * 333.40862 * 7 2 1 9 9 N 1.36933 * 120.00649 * 153.41205 * 7 2 1 10 10 C 1.47423 * 125.65343 * 169.48661 * 9 7 2 11 11 C 1.54907 * 104.83071 * 155.91902 * 10 9 7 12 12 C 1.55152 * 101.58374 * 37.00998 * 11 10 9 13 13 O 1.42901 * 110.71945 * 83.03773 * 12 11 10 14 14 C 1.52999 * 110.72271 * 206.13077 * 12 11 10 15 15 N 1.46498 * 109.47315 * 179.97438 * 14 12 11 16 16 C 1.34777 * 120.00110 * 180.02562 * 15 14 12 17 17 O 1.21548 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.47843 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.39597 * 120.14555 * 324.84788 * 18 16 15 20 20 C 1.37943 * 119.85375 * 179.97438 * 19 18 16 21 21 C 1.38380 * 120.14549 * 0.02562 * 20 19 18 22 22 C 1.38342 * 120.29091 * 359.74936 * 21 20 19 23 23 C 1.37976 * 120.14403 * 0.50141 * 22 21 20 24 24 C 1.50703 * 120.07616 * 179.77143 * 23 22 21 25 25 C 1.53784 * 113.61451 * 304.79438 * 24 23 22 26 26 C 1.53780 * 87.08415 * 139.97521 * 25 24 23 27 27 C 1.53787 * 113.60961 * 42.28870 * 24 23 22 28 28 C 1.47021 * 125.64174 * 349.54459 * 9 7 2 29 29 H 0.97005 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36250 * 37.08380 * 10 9 7 31 31 H 1.09000 * 110.46059 * 274.80459 * 10 9 7 32 32 H 1.09003 * 111.00673 * 278.93677 * 11 10 9 33 33 H 1.08998 * 111.03486 * 155.10119 * 11 10 9 34 34 H 0.96701 * 114.00206 * 182.44190 * 13 12 11 35 35 H 1.09001 * 109.46813 * 60.00543 * 14 12 11 36 36 H 1.08999 * 109.47330 * 300.00735 * 14 12 11 37 37 H 0.97000 * 119.99867 * 0.02562 * 15 14 12 38 38 H 1.07999 * 120.07467 * 0.02562 * 19 18 16 39 39 H 1.07996 * 119.92440 * 180.02562 * 20 19 18 40 40 H 1.07995 * 119.85241 * 179.97438 * 21 20 19 41 41 H 1.07992 * 119.92913 * 180.25613 * 22 21 20 42 42 H 1.08996 * 112.90840 * 173.54094 * 24 23 22 43 43 H 1.09005 * 113.61121 * 25.42621 * 25 24 23 44 44 H 1.08995 * 113.61385 * 254.53155 * 25 24 23 45 45 H 1.09000 * 113.61070 * 89.11519 * 26 25 24 46 46 H 1.08998 * 113.61633 * 220.02110 * 26 25 24 47 47 H 1.08996 * 113.61171 * 105.47405 * 27 24 23 48 48 H 1.08994 * 113.61743 * 334.56773 * 27 24 23 49 49 H 1.08999 * 109.88666 * 61.59773 * 28 9 7 50 50 H 1.08998 * 109.88692 * 300.42519 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6137 1.9794 -1.3936 5 1 1.3945 2.6834 0.5809 6 1 3.4848 1.4764 0.8129 7 6 2.0102 -1.2021 -0.0005 8 1 1.5558 -2.0882 0.4178 9 7 3.2710 -1.2647 -0.5313 10 6 4.2006 -2.4020 -0.4058 11 6 5.1536 -2.2710 -1.6200 12 6 5.3166 -0.7315 -1.7235 13 8 6.3172 -0.2669 -0.8152 14 6 5.6558 -0.3182 -3.1570 15 7 5.8028 1.1379 -3.2236 16 6 6.1030 1.7320 -4.3955 17 8 6.2513 1.0598 -5.3973 18 6 6.2519 3.2014 -4.4625 19 6 5.4486 4.0243 -3.6711 20 6 5.5930 5.3945 -3.7381 21 6 6.5312 5.9538 -4.5877 22 6 7.3337 5.1438 -5.3711 23 6 7.1959 3.7720 -5.3175 24 6 8.0673 2.8913 -6.1755 25 6 7.9984 3.2290 -7.6742 26 6 9.5158 2.9838 -7.7190 27 6 9.5379 3.3385 -6.2228 28 6 3.9220 -0.2083 -1.3198 29 1 -0.4850 0.8401 -0.0004 30 1 3.6552 -3.3446 -0.4515 31 1 4.7620 -2.3341 0.5261 32 1 4.6952 -2.6768 -2.5220 33 1 6.1106 -2.7527 -1.4200 34 1 6.4318 0.6933 -0.8137 35 1 4.8542 -0.6329 -3.8252 36 1 6.5891 -0.7923 -3.4607 37 1 5.6841 1.6744 -2.4242 38 1 4.7162 3.5891 -3.0074 39 1 4.9724 6.0322 -3.1261 40 1 6.6400 7.0271 -4.6366 41 1 8.0669 5.5863 -6.0291 42 1 7.9403 1.8303 -5.9607 43 1 7.7169 4.2625 -7.8764 44 1 7.4225 2.5106 -8.2576 45 1 9.7848 1.9480 -7.9262 46 1 10.0549 3.6954 -8.3444 47 1 10.2050 2.7085 -5.6345 48 1 9.6774 4.4019 -6.0282 49 1 4.0248 0.6941 -0.7171 50 1 3.3334 0.0044 -2.2121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724425974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:43 Heat of formation + Delta-G solvation = -25.758921 kcal Electronic energy + Delta-G solvation = -30901.783143 eV Core-core repulsion = 26894.556762 eV Total energy + Delta-G solvation = -4007.226381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.81570 -40.73724 -39.64509 -38.58285 -36.98462 -35.45763 -34.34014 -32.61363 -32.12630 -31.61590 -30.10387 -27.74922 -26.52323 -26.48366 -25.59921 -24.46011 -22.91491 -22.31421 -21.77929 -21.39707 -20.06237 -19.55714 -18.90249 -18.32414 -17.50747 -17.28007 -16.84506 -16.62257 -16.25199 -16.01229 -15.76563 -15.66445 -15.45103 -15.26797 -15.13789 -14.71525 -14.54227 -14.36332 -14.12065 -13.84802 -13.66887 -13.43809 -13.34513 -13.31303 -13.03389 -12.85871 -12.74834 -12.54279 -12.40840 -12.22062 -12.17133 -11.93359 -11.62310 -11.49034 -11.34511 -11.17796 -11.02676 -10.84195 -10.78849 -10.30598 -9.96608 -9.67041 -9.19727 -8.21892 -5.42860 -0.10711 0.33165 1.19001 1.32785 1.42635 1.65506 1.95166 2.36593 2.71947 2.89117 3.01677 3.15922 3.45724 3.57630 3.63668 3.67053 3.68903 3.71902 3.85735 3.94706 4.09538 4.13683 4.17265 4.32313 4.34908 4.40620 4.44768 4.48377 4.61566 4.70735 4.75606 4.80439 4.81558 4.84393 4.86960 4.93716 4.97090 5.01829 5.08195 5.10495 5.19393 5.19954 5.26839 5.33913 5.46648 5.48764 5.58027 5.69532 5.91409 6.04447 6.25126 6.54762 6.68640 6.99120 7.49023 8.03268 8.97362 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.003282 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.173459 B = 8529.598873 C = 9874.264207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.045 4.045 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.309 1.309 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.066 0.934 9 N -0.625 5.625 10 C 0.128 3.872 11 C -0.103 4.103 12 C 0.122 3.878 13 O -0.546 6.546 14 C 0.114 3.886 15 N -0.719 5.719 16 C 0.560 3.440 17 O -0.559 6.559 18 C -0.155 4.155 19 C -0.099 4.099 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.025 4.025 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.128 4.128 28 C 0.093 3.907 29 H 0.262 0.738 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.382 0.618 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.025 0.975 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.089 12.600 -12.973 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.239 4.239 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.238 1.238 6 H -0.197 1.197 7 C -0.367 4.367 8 H 0.083 0.917 9 N -0.352 5.352 10 C 0.004 3.996 11 C -0.142 4.142 12 C 0.080 3.920 13 O -0.353 6.353 14 C -0.010 4.010 15 N -0.371 5.371 16 C 0.349 3.651 17 O -0.439 6.439 18 C -0.158 4.158 19 C -0.118 4.118 20 C -0.152 4.152 21 C -0.103 4.103 22 C -0.142 4.142 23 C -0.026 4.026 24 C -0.118 4.118 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.165 4.165 28 C -0.032 4.032 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.231 0.769 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.240 0.760 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.043 0.957 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 22.033 11.508 -13.500 28.286 hybrid contribution -0.933 1.226 0.869 1.769 sum 21.100 12.734 -12.631 27.693 Atomic orbital electron populations 1.70031 1.07192 1.27261 1.55340 1.25521 0.95814 1.00931 1.01649 0.85950 0.77645 0.80281 0.78456 1.19161 1.23768 1.19677 1.18661 0.88453 0.95541 1.34005 0.91665 1.44850 1.13591 1.16257 1.60486 1.21798 0.90544 0.90578 0.96658 1.22759 1.00956 0.91124 0.99331 1.22279 0.85530 0.96943 0.87207 1.86558 1.57459 1.27868 1.63400 1.21913 1.03133 0.80210 0.95754 1.45890 1.71498 1.08311 1.11420 1.18621 0.75556 0.88250 0.82678 1.90699 1.51376 1.66422 1.35387 1.19777 1.02038 0.91595 1.02390 1.21453 0.97991 0.95020 0.97315 1.21411 0.99624 0.94006 1.00133 1.21723 0.93333 1.01645 0.93593 1.21247 1.00809 0.91613 1.00578 1.19976 0.94044 0.94912 0.93626 1.21948 0.95028 0.99656 0.95217 1.22933 0.97443 1.01958 0.94007 1.22775 0.95583 1.02145 0.96571 1.23058 0.94019 1.02302 0.97093 1.22443 0.93907 0.92391 0.94489 0.92913 0.92808 0.95122 0.88310 0.87131 0.76895 0.90901 0.88858 0.75980 0.86020 0.83456 0.82310 0.82952 0.88861 0.88914 0.92801 0.90567 0.89495 0.91664 0.88278 0.95727 0.94925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.97 21.65 0.30 -60.11 16 2 C -0.04 -2.65 5.43 84.86 0.46 -2.19 16 3 Si 0.95 45.95 24.29 68.60 1.67 47.62 16 4 H -0.27 -11.77 6.71 99.48 0.67 -11.10 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.27 -12.59 6.72 99.48 0.67 -11.92 16 7 C -0.24 -13.83 10.57 84.03 0.89 -12.94 16 8 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 9 N -0.63 -29.97 3.29 -691.99 -2.27 -32.25 16 10 C 0.13 4.92 7.23 86.85 0.63 5.55 16 11 C -0.10 -3.02 6.26 31.98 0.20 -2.82 16 12 C 0.12 3.74 0.92 -9.61 -0.01 3.73 16 13 O -0.55 -15.61 13.09 -148.98 -1.95 -17.56 16 14 C 0.11 3.13 4.74 86.38 0.41 3.54 16 15 N -0.72 -18.94 5.11 -465.98 -2.38 -21.32 16 16 C 0.56 16.17 7.10 86.79 0.62 16.78 16 17 O -0.56 -19.10 14.21 -3.87 -0.05 -19.15 16 18 C -0.16 -3.84 5.79 -20.09 -0.12 -3.96 16 19 C -0.10 -2.18 9.33 22.53 0.21 -1.97 16 20 C -0.13 -2.25 10.03 22.23 0.22 -2.03 16 21 C -0.09 -1.15 10.04 22.33 0.22 -0.93 16 22 C -0.12 -1.91 8.44 22.23 0.19 -1.72 16 23 C -0.02 -0.53 5.32 -19.61 -0.10 -0.63 16 24 C -0.10 -2.11 3.44 -11.01 -0.04 -2.15 16 25 C -0.13 -2.25 7.53 31.12 0.23 -2.01 16 26 C -0.13 -1.88 8.08 31.12 0.25 -1.63 16 27 C -0.13 -1.92 7.47 31.13 0.23 -1.69 16 28 C 0.09 3.79 3.98 86.73 0.35 4.14 16 29 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 2.66 8.05 -2.39 -0.02 2.64 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.38 8.55 7.78 -74.06 -0.58 7.97 16 35 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.40 9.44 6.43 -92.71 -0.60 8.84 16 38 H 0.12 2.72 7.59 -2.91 -0.02 2.69 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.15 1.52 6.73 -2.91 -0.02 1.50 16 42 H 0.09 2.56 5.26 -2.39 -0.01 2.55 16 43 H 0.09 1.37 7.40 -2.38 -0.02 1.35 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 1.13 6.57 -2.39 -0.02 1.12 16 49 H 0.03 1.06 3.69 -2.39 -0.01 1.05 16 50 H 0.03 1.44 7.42 -2.39 -0.02 1.43 16 Total: -1.00 -75.60 388.80 -0.13 -75.72 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.28 Total: 29.98 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.84 Total: -2.94 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.35 Total: -113.67 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -2.01 Total: -36.72 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -75.60 -0.13 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724425974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.963 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds