Wall clock time and date at job start Wed Apr 1 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48512 * 109.46941 * 239.99864 * 3 2 1 5 5 H 1.48505 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47318 * 120.00179 * 3 2 1 7 7 C 1.38811 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00214 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47452 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88375 * 308.88254 * 12 11 10 14 14 C 1.55156 * 111.03459 * 72.78392 * 12 11 10 15 15 C 1.54337 * 103.01866 * 153.39836 * 14 12 11 16 16 N 1.47022 * 107.26739 * 338.13951 * 15 14 12 17 17 C 1.34766 * 125.64822 * 178.84844 * 16 15 14 18 18 O 1.21285 * 120.00170 * 185.28202 * 17 16 15 19 19 C 1.50701 * 120.00304 * 5.28387 * 17 16 15 20 20 H 1.09000 * 109.20385 * 328.68965 * 19 17 16 21 21 O 1.42717 * 109.33956 * 209.09997 * 19 17 16 22 22 C 1.43204 * 113.16947 * 188.01708 * 21 19 17 23 23 C 1.52973 * 108.48283 * 70.60691 * 22 21 19 24 24 C 1.50739 * 109.75261 * 310.70164 * 23 22 21 25 25 C 1.38593 * 118.76757 * 197.09312 * 24 23 22 26 26 C 1.38065 * 120.27623 * 180.44475 * 25 24 23 27 27 C 1.38259 * 119.86198 * 359.73417 * 26 25 24 28 28 C 1.38054 * 119.89814 * 0.43987 * 27 26 25 29 29 C 1.37904 * 121.34494 * 17.32665 * 24 23 22 30 30 C 1.47429 * 108.69838 * 358.58721 * 16 15 14 31 31 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47095 * 59.99122 * 10 9 7 34 34 H 1.09000 * 109.47111 * 299.99972 * 10 9 7 35 35 H 1.08997 * 109.47066 * 60.00136 * 11 10 9 36 36 H 1.09007 * 109.47129 * 300.00351 * 11 10 9 37 37 H 1.09006 * 110.72479 * 271.95557 * 14 12 11 38 38 H 1.09001 * 110.72337 * 35.22881 * 14 12 11 39 39 H 1.09002 * 109.99238 * 218.66434 * 15 14 12 40 40 H 1.08996 * 109.77767 * 97.50118 * 15 14 12 41 41 H 1.09000 * 109.63452 * 310.91385 * 22 21 19 42 42 H 1.08999 * 109.80744 * 190.40892 * 22 21 19 43 43 H 1.08997 * 109.42956 * 190.60593 * 23 22 21 44 44 H 1.09000 * 109.42167 * 70.78240 * 23 22 21 45 45 H 1.08009 * 119.86168 * 0.41422 * 25 24 23 46 46 H 1.08007 * 120.06926 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.05529 * 180.17623 * 27 26 25 48 48 H 1.07995 * 119.85188 * 179.70743 * 28 27 26 49 49 H 1.09001 * 110.36226 * 143.19237 * 30 16 15 50 50 H 1.08999 * 110.36401 * 265.51510 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 1 2.5761 -6.1616 -0.7928 14 6 2.4795 -6.4128 1.3833 15 6 2.5718 -7.9527 1.4315 16 7 1.5808 -8.4792 0.4815 17 6 1.3646 -9.7821 0.2136 18 8 0.5860 -10.1005 -0.6601 19 6 2.0900 -10.8436 0.9998 20 1 3.0681 -10.4646 1.2963 21 8 2.2597 -12.0025 0.1845 22 6 2.7766 -13.1273 0.9045 23 6 1.6881 -13.6406 1.8488 24 6 1.1118 -12.4907 2.6348 25 6 0.3832 -12.7652 3.7814 26 6 -0.1663 -11.7362 4.5199 27 6 0.0155 -10.4262 4.1171 28 6 0.7381 -10.1521 2.9731 29 6 1.2926 -11.1842 2.2319 30 6 0.8587 -7.3459 -0.1249 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6847 -3.7145 -0.8894 35 1 0.4369 -4.7621 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 3.4709 -5.9629 1.4369 38 1 1.8431 -6.0430 2.1873 39 1 2.3467 -8.3083 2.4370 40 1 3.5721 -8.2715 1.1386 41 1 3.6490 -12.8226 1.4826 42 1 3.0573 -13.9157 0.2061 43 1 2.1180 -14.3698 2.5354 44 1 0.8974 -14.1142 1.2669 45 1 0.2444 -13.7884 4.0982 46 1 -0.7338 -11.9540 5.4127 47 1 -0.4105 -9.6188 4.6940 48 1 0.8756 -9.1288 2.6565 49 1 0.6427 -7.5511 -1.1733 50 1 -0.0633 -7.1475 0.4216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724715283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:17 Heat of formation + Delta-G solvation = -38.981356 kcal Electronic energy + Delta-G solvation = -29886.078841 eV Core-core repulsion = 25878.279092 eV Total energy + Delta-G solvation = -4007.799749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.27896 -39.71888 -38.20801 -37.48575 -35.19601 -33.67508 -33.03720 -32.16270 -30.86444 -29.94941 -29.63925 -27.84709 -26.31855 -24.33356 -23.98143 -23.10035 -22.79468 -21.48742 -20.64097 -20.20462 -19.46875 -17.96387 -17.54034 -17.08993 -16.87859 -16.27354 -15.86638 -15.56026 -15.36476 -14.93316 -14.67166 -14.53511 -14.20528 -14.05530 -13.95572 -13.61654 -13.33537 -13.22507 -13.19133 -12.94690 -12.81688 -12.62507 -12.31168 -12.28565 -12.14762 -11.66521 -11.58956 -11.28542 -11.09426 -11.04923 -10.80888 -10.67561 -10.50694 -10.34122 -10.14357 -10.12393 -10.02496 -9.68383 -9.17041 -8.99129 -8.86488 -8.83986 -6.91666 -5.75927 -3.04743 0.84819 0.96167 2.25514 2.51101 3.32173 3.44172 3.48349 3.49646 3.55459 4.07915 4.13120 4.25225 4.35581 4.42914 4.51151 4.58327 4.64041 4.68678 4.72683 4.77029 4.81412 4.99873 5.03203 5.04469 5.13915 5.25735 5.29217 5.36914 5.42056 5.54203 5.55336 5.60367 5.64309 5.66672 5.75620 5.81242 5.85546 5.99842 6.05042 6.08430 6.10420 6.12457 6.24411 6.35509 6.38101 6.55403 6.58085 6.83558 6.88172 7.24571 7.69432 7.92540 8.43226 9.53916 10.12667 10.46748 11.46955 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.001931 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.728743 B =14496.530634 C =15101.595201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.093 4.093 13 H 0.087 0.913 14 C -0.126 4.126 15 C 0.088 3.912 16 N -0.617 5.617 17 C 0.542 3.458 18 O -0.514 6.514 19 C 0.122 3.878 20 H 0.090 0.910 21 O -0.349 6.349 22 C 0.058 3.942 23 C -0.117 4.117 24 C -0.065 4.065 25 C -0.119 4.119 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.113 4.113 29 C -0.112 4.112 30 C 0.110 3.890 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.132 0.868 49 H 0.081 0.919 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -30.270 9.370 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.105 0.895 14 C -0.164 4.164 15 C -0.035 4.035 16 N -0.353 5.353 17 C 0.328 3.672 18 O -0.388 6.388 19 C 0.060 3.940 20 H 0.108 0.892 21 O -0.267 6.267 22 C -0.018 4.018 23 C -0.154 4.154 24 C -0.065 4.065 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.131 4.131 29 C -0.112 4.112 30 C -0.011 4.011 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.150 0.850 49 H 0.099 0.901 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.834 -30.428 8.662 32.004 hybrid contribution 0.204 0.964 0.432 1.076 sum 5.038 -29.464 9.094 31.244 Atomic orbital electron populations 1.69651 1.05109 1.25768 1.57733 1.24758 0.95550 0.97736 1.03081 0.86257 0.78506 0.83518 0.77835 1.21272 1.21684 1.21277 1.19183 0.90984 0.84219 1.42727 0.91265 1.42368 1.05907 1.00084 1.89527 1.20617 0.93456 0.85445 0.97728 1.21672 0.98672 0.92451 1.02585 1.22342 0.97488 0.93990 0.97480 0.89507 1.22751 1.02910 0.92421 0.98295 1.22343 0.92277 0.95911 0.92933 1.48455 1.38614 1.04756 1.43455 1.19509 0.82738 0.81506 0.83408 1.90732 1.35976 1.80796 1.31303 1.20656 0.97834 0.87150 0.88309 0.89244 1.88169 1.85424 1.19527 1.33550 1.22721 0.94880 0.88715 0.95522 1.21172 0.99720 0.96207 0.98350 1.19449 0.98219 0.93315 0.95524 1.21061 0.98209 0.99509 0.94898 1.21191 0.99137 0.92831 0.99729 1.21141 0.98775 0.97032 0.96625 1.21347 0.97360 0.99229 0.95190 1.19720 1.01119 0.93860 0.96531 1.22403 0.95213 0.84059 0.99468 0.93461 0.78305 0.96327 0.96511 0.91445 0.91525 0.89367 0.89958 0.91001 0.91109 0.92296 0.87494 0.89346 0.89245 0.85694 0.85655 0.85463 0.85000 0.90055 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.56 5.60 -59.91 -0.34 -18.89 16 10 C 0.16 2.98 6.16 -4.05 -0.02 2.96 16 11 C -0.12 -1.72 4.84 -26.73 -0.13 -1.85 16 12 C -0.09 -1.09 3.01 -88.47 -0.27 -1.36 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.13 -1.22 5.90 -24.89 -0.15 -1.36 16 15 C 0.09 0.76 5.56 -3.06 -0.02 0.74 16 16 N -0.62 -7.10 2.71 -170.51 -0.46 -7.56 16 17 C 0.54 7.42 6.24 -10.99 -0.07 7.35 16 18 O -0.51 -9.23 16.95 -12.55 -0.21 -9.44 16 19 C 0.12 1.35 2.75 -29.05 -0.08 1.27 16 20 H 0.09 0.78 7.11 -51.93 -0.37 0.41 16 21 O -0.35 -4.13 10.12 -53.34 -0.54 -4.67 16 22 C 0.06 0.42 6.85 37.14 0.25 0.68 16 23 C -0.12 -0.81 6.01 -27.88 -0.17 -0.98 16 24 C -0.06 -0.59 5.77 -104.59 -0.60 -1.20 16 25 C -0.12 -0.93 9.67 -39.51 -0.38 -1.31 16 26 C -0.11 -0.86 10.05 -39.64 -0.40 -1.26 16 27 C -0.12 -1.02 10.05 -39.64 -0.40 -1.41 16 28 C -0.11 -1.12 8.66 -39.50 -0.34 -1.46 16 29 C -0.11 -1.17 5.46 -104.61 -0.57 -1.74 16 30 C 0.11 1.33 6.40 -2.53 -0.02 1.31 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 33 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.00 7.97 -51.92 -0.41 0.58 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 39 H 0.07 0.53 5.82 -51.93 -0.30 0.22 16 40 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 41 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.13 1.26 4.36 -52.49 -0.23 1.03 16 49 H 0.08 1.08 7.99 -51.93 -0.41 0.66 16 50 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -35.36 396.09 -11.36 -46.72 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.88 Total: 5.17 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.60 Total: -7.04 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.07 Total: -54.08 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.75 Total: -14.12 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.36 -11.36 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.737 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds