Wall clock time and date at job start Wed Apr 1 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48512 * 109.46941 * 239.99864 * 3 2 1 5 5 H 1.48505 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47318 * 120.00179 * 3 2 1 7 7 C 1.38811 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00214 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47452 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88375 * 308.88254 * 12 11 10 14 14 C 1.55156 * 111.03459 * 72.78392 * 12 11 10 15 15 C 1.54337 * 103.01866 * 153.39836 * 14 12 11 16 16 N 1.47022 * 107.26739 * 338.13951 * 15 14 12 17 17 C 1.34766 * 125.64822 * 178.84844 * 16 15 14 18 18 O 1.21285 * 120.00170 * 185.28202 * 17 16 15 19 19 C 1.50701 * 120.00304 * 5.28387 * 17 16 15 20 20 H 1.09000 * 109.20385 * 328.68965 * 19 17 16 21 21 O 1.42717 * 109.33956 * 209.09997 * 19 17 16 22 22 C 1.43204 * 113.16947 * 188.01708 * 21 19 17 23 23 C 1.52973 * 108.48283 * 70.60691 * 22 21 19 24 24 C 1.50739 * 109.75261 * 310.70164 * 23 22 21 25 25 C 1.38593 * 118.76757 * 197.09312 * 24 23 22 26 26 C 1.38065 * 120.27623 * 180.44475 * 25 24 23 27 27 C 1.38259 * 119.86198 * 359.73417 * 26 25 24 28 28 C 1.38054 * 119.89814 * 0.43987 * 27 26 25 29 29 C 1.37904 * 121.34494 * 17.32665 * 24 23 22 30 30 C 1.47429 * 108.69838 * 358.58721 * 16 15 14 31 31 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47095 * 59.99122 * 10 9 7 34 34 H 1.09000 * 109.47111 * 299.99972 * 10 9 7 35 35 H 1.08997 * 109.47066 * 60.00136 * 11 10 9 36 36 H 1.09007 * 109.47129 * 300.00351 * 11 10 9 37 37 H 1.09006 * 110.72479 * 271.95557 * 14 12 11 38 38 H 1.09001 * 110.72337 * 35.22881 * 14 12 11 39 39 H 1.09002 * 109.99238 * 218.66434 * 15 14 12 40 40 H 1.08996 * 109.77767 * 97.50118 * 15 14 12 41 41 H 1.09000 * 109.63452 * 310.91385 * 22 21 19 42 42 H 1.08999 * 109.80744 * 190.40892 * 22 21 19 43 43 H 1.08997 * 109.42956 * 190.60593 * 23 22 21 44 44 H 1.09000 * 109.42167 * 70.78240 * 23 22 21 45 45 H 1.08009 * 119.86168 * 0.41422 * 25 24 23 46 46 H 1.08007 * 120.06926 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.05529 * 180.17623 * 27 26 25 48 48 H 1.07995 * 119.85188 * 179.70743 * 28 27 26 49 49 H 1.09001 * 110.36226 * 143.19237 * 30 16 15 50 50 H 1.08999 * 110.36401 * 265.51510 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 1 2.5761 -6.1616 -0.7928 14 6 2.4795 -6.4128 1.3833 15 6 2.5718 -7.9527 1.4315 16 7 1.5808 -8.4792 0.4815 17 6 1.3646 -9.7821 0.2136 18 8 0.5860 -10.1005 -0.6601 19 6 2.0900 -10.8436 0.9998 20 1 3.0681 -10.4646 1.2963 21 8 2.2597 -12.0025 0.1845 22 6 2.7766 -13.1273 0.9045 23 6 1.6881 -13.6406 1.8488 24 6 1.1118 -12.4907 2.6348 25 6 0.3832 -12.7652 3.7814 26 6 -0.1663 -11.7362 4.5199 27 6 0.0155 -10.4262 4.1171 28 6 0.7381 -10.1521 2.9731 29 6 1.2926 -11.1842 2.2319 30 6 0.8587 -7.3459 -0.1249 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6847 -3.7145 -0.8894 35 1 0.4369 -4.7621 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 3.4709 -5.9629 1.4369 38 1 1.8431 -6.0430 2.1873 39 1 2.3467 -8.3083 2.4370 40 1 3.5721 -8.2715 1.1386 41 1 3.6490 -12.8226 1.4826 42 1 3.0573 -13.9157 0.2061 43 1 2.1180 -14.3698 2.5354 44 1 0.8974 -14.1142 1.2669 45 1 0.2444 -13.7884 4.0982 46 1 -0.7338 -11.9540 5.4127 47 1 -0.4105 -9.6188 4.6940 48 1 0.8756 -9.1288 2.6565 49 1 0.6427 -7.5511 -1.1733 50 1 -0.0633 -7.1475 0.4216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724715283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:16 Heat of formation + Delta-G solvation = -59.874886 kcal Electronic energy + Delta-G solvation = -29886.984852 eV Core-core repulsion = 25878.279092 eV Total energy + Delta-G solvation = -4008.705760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.06936 -40.55799 -39.07204 -38.37925 -36.84715 -34.78341 -34.04484 -33.12642 -32.34507 -30.70747 -30.53012 -29.11473 -27.30851 -25.62207 -24.90979 -24.14179 -23.55028 -22.94398 -21.36697 -21.18061 -20.37001 -19.15204 -18.72662 -18.32275 -17.68310 -17.08064 -16.70145 -16.62307 -16.26960 -16.16792 -15.84139 -15.41864 -15.27260 -15.17944 -14.99422 -14.86108 -14.64044 -14.22743 -14.03182 -13.89330 -13.64736 -13.53848 -13.32918 -13.08937 -12.95108 -12.86848 -12.79593 -12.71083 -12.39539 -12.23693 -12.06989 -11.95755 -11.68281 -11.62135 -11.54198 -11.49790 -11.12190 -10.89167 -10.80225 -9.86232 -9.75617 -9.63515 -8.98212 -7.93990 -5.22938 0.20167 0.34265 1.29267 1.48183 1.51525 1.57598 1.61289 2.57319 2.68273 2.84901 3.26573 3.39648 3.41916 3.54307 3.60175 3.69478 3.76188 3.85009 3.95263 4.04247 4.17166 4.20483 4.23914 4.26274 4.33282 4.46071 4.47102 4.52068 4.56393 4.60225 4.66441 4.76935 4.77809 4.81500 4.86786 4.89610 4.94087 4.98978 5.04805 5.10174 5.17967 5.28195 5.39412 5.40396 5.46536 5.50053 5.51222 5.51694 5.90835 5.97581 6.28608 6.31350 6.92400 7.34356 8.12153 8.33713 9.29538 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.001931 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.728743 B =14496.530634 C =15101.595201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.102 4.102 12 C -0.083 4.083 13 H 0.089 0.911 14 C -0.121 4.121 15 C 0.088 3.912 16 N -0.612 5.612 17 C 0.536 3.464 18 O -0.570 6.570 19 C 0.127 3.873 20 H 0.112 0.888 21 O -0.382 6.382 22 C 0.051 3.949 23 C -0.116 4.116 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.132 4.132 30 C 0.110 3.890 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.031 0.969 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.140 0.860 48 H 0.129 0.871 49 H 0.064 0.936 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -31.676 11.256 34.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.140 4.140 12 C -0.103 4.103 13 H 0.107 0.893 14 C -0.159 4.159 15 C -0.033 4.033 16 N -0.346 5.346 17 C 0.324 3.676 18 O -0.449 6.449 19 C 0.066 3.934 20 H 0.130 0.870 21 O -0.301 6.301 22 C -0.025 4.025 23 C -0.152 4.152 24 C -0.079 4.079 25 C -0.139 4.139 26 C -0.131 4.131 27 C -0.147 4.147 28 C -0.147 4.147 29 C -0.133 4.133 30 C -0.012 4.012 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.168 0.832 46 H 0.167 0.833 47 H 0.158 0.842 48 H 0.147 0.853 49 H 0.082 0.918 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.787 -31.854 10.578 34.244 hybrid contribution -0.383 1.322 -0.137 1.383 sum 6.404 -30.533 10.440 32.897 Atomic orbital electron populations 1.69816 1.06665 1.26144 1.59571 1.25621 0.96450 1.01292 1.03823 0.85187 0.77168 0.78993 0.78269 1.20452 1.22274 1.20099 1.19626 0.91572 0.85394 1.41126 0.90479 1.42641 1.05709 1.01501 1.89478 1.20797 0.94067 0.84443 0.97918 1.21493 0.97844 0.92570 1.02116 1.22159 0.97054 0.91823 0.99232 0.89280 1.22756 1.03336 0.93196 0.96583 1.22530 0.92473 0.95027 0.93261 1.48495 1.38633 1.04157 1.43301 1.20142 0.82166 0.82420 0.82854 1.90691 1.38566 1.81755 1.33879 1.20633 0.98500 0.86381 0.87838 0.87029 1.88123 1.86001 1.20751 1.35210 1.23031 0.95464 0.87877 0.96130 1.21227 0.99467 0.96007 0.98531 1.19802 0.98435 0.93439 0.96202 1.21408 0.97368 1.00875 0.94285 1.21546 0.98739 0.92432 1.00380 1.21399 0.98673 0.98136 0.96477 1.21431 0.98201 0.99112 0.95929 1.19814 1.02172 0.94803 0.96518 1.22301 0.95570 0.84646 0.98664 0.94038 0.79582 0.95073 0.96555 0.92557 0.91491 0.88078 0.89809 0.89156 0.89031 0.90610 0.85751 0.86371 0.89898 0.83188 0.83281 0.84167 0.85313 0.91759 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.05 5.60 -343.47 -1.92 -39.98 16 10 C 0.15 5.81 6.16 86.38 0.53 6.34 16 11 C -0.10 -3.02 4.84 30.59 0.15 -2.87 16 12 C -0.08 -1.87 3.01 -9.40 -0.03 -1.90 16 13 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.12 -2.08 5.90 31.79 0.19 -1.89 16 15 C 0.09 1.34 5.56 86.73 0.48 1.83 16 16 N -0.61 -13.84 2.71 -811.78 -2.20 -16.04 16 17 C 0.54 14.90 6.24 87.66 0.55 15.44 16 18 O -0.57 -21.50 16.95 14.27 0.24 -21.26 16 19 C 0.13 2.74 2.75 29.09 0.08 2.82 16 20 H 0.11 1.76 7.11 -2.39 -0.02 1.74 16 21 O -0.38 -8.93 10.12 -131.67 -1.33 -10.26 16 22 C 0.05 0.65 6.85 71.97 0.49 1.15 16 23 C -0.12 -1.36 6.01 29.85 0.18 -1.19 16 24 C -0.08 -1.31 5.77 -19.85 -0.11 -1.42 16 25 C -0.12 -1.62 9.67 22.31 0.22 -1.40 16 26 C -0.11 -1.50 10.05 22.23 0.22 -1.28 16 27 C -0.13 -2.05 10.05 22.23 0.22 -1.82 16 28 C -0.13 -2.44 8.66 22.32 0.19 -2.25 16 29 C -0.13 -2.65 5.46 -19.86 -0.11 -2.76 16 30 C 0.11 2.70 6.40 86.85 0.56 3.26 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16 33 H 0.03 1.12 7.75 -2.38 -0.02 1.10 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.98 7.97 -2.38 -0.02 1.96 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 39 H 0.09 1.11 5.82 -2.39 -0.01 1.10 16 40 H 0.09 1.08 7.91 -2.39 -0.02 1.06 16 41 H 0.08 0.70 8.07 -2.39 -0.02 0.68 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 46 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 47 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 48 H 0.13 2.37 4.36 -2.91 -0.01 2.35 16 49 H 0.06 1.79 7.99 -2.39 -0.02 1.77 16 50 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 Total: -1.00 -78.14 396.09 2.45 -75.69 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.23 Total: 28.32 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.12 Total: -4.95 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.84 Total: -115.58 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.09 Total: -31.52 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.14 2.45 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.814 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds