Wall clock time and date at job start Wed Apr 1 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99943 * 2 1 4 4 H 1.48494 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47366 * 300.00217 * 3 2 1 6 6 H 1.48500 * 109.46923 * 60.00094 * 3 2 1 7 7 C 1.38803 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00552 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99710 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.88425 * 302.56956 * 12 11 10 14 14 C 1.55151 * 111.00694 * 66.45154 * 12 11 10 15 15 C 1.54328 * 102.94124 * 153.57631 * 14 12 11 16 16 N 1.47017 * 107.27075 * 337.80875 * 15 14 12 17 17 C 1.34782 * 125.64636 * 178.89889 * 16 15 14 18 18 O 1.21281 * 119.99778 * 184.24082 * 17 16 15 19 19 C 1.50697 * 120.00072 * 4.24450 * 17 16 15 20 20 H 1.09007 * 109.20564 * 25.36927 * 19 17 16 21 21 O 1.42728 * 109.33796 * 144.96242 * 19 17 16 22 22 C 1.43214 * 113.13349 * 171.99292 * 21 19 17 23 23 C 1.52974 * 108.47362 * 289.31779 * 22 21 19 24 24 C 1.50743 * 109.75792 * 49.22447 * 23 22 21 25 25 C 1.38599 * 118.76243 * 163.16201 * 24 23 22 26 26 C 1.38067 * 120.27828 * 179.74749 * 25 24 23 27 27 C 1.38256 * 119.86075 * 359.94764 * 26 25 24 28 28 C 1.38059 * 119.89653 * 0.32769 * 27 26 25 29 29 C 1.37900 * 121.35219 * 342.97403 * 24 23 22 30 30 C 1.47419 * 108.70502 * 359.16885 * 16 15 14 31 31 H 0.97004 * 119.99926 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99785 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47055 * 60.00699 * 10 9 7 34 34 H 1.08993 * 109.47600 * 300.00545 * 10 9 7 35 35 H 1.08996 * 109.46936 * 60.00319 * 11 10 9 36 36 H 1.08998 * 109.47168 * 300.00141 * 11 10 9 37 37 H 1.08998 * 110.72225 * 35.21889 * 14 12 11 38 38 H 1.08999 * 110.87744 * 272.00821 * 14 12 11 39 39 H 1.09005 * 109.88205 * 218.39001 * 15 14 12 40 40 H 1.09005 * 109.87973 * 97.23086 * 15 14 12 41 41 H 1.09003 * 109.63519 * 169.62723 * 22 21 19 42 42 H 1.08994 * 109.80727 * 49.11625 * 22 21 19 43 43 H 1.08997 * 109.42452 * 289.13420 * 23 22 21 44 44 H 1.09006 * 109.37200 * 169.27567 * 23 22 21 45 45 H 1.08000 * 119.86097 * 359.76537 * 25 24 23 46 46 H 1.08000 * 120.07065 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.05257 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.84663 * 179.76703 * 28 27 26 49 49 H 1.08998 * 110.36900 * 142.73812 * 30 16 15 50 50 H 1.08999 * 110.37120 * 265.06085 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 1 2.4978 -6.2067 -0.8609 14 6 2.6081 -6.3375 1.3251 15 6 2.7120 -7.8726 1.4450 16 7 1.6337 -8.4482 0.6281 17 6 1.3973 -9.7636 0.4533 18 8 0.5243 -10.1271 -0.3060 19 6 2.2177 -10.7825 1.2014 20 1 2.6023 -10.3315 2.1162 21 8 1.3943 -11.8996 1.5350 22 6 2.1310 -12.9967 2.0870 23 6 2.9694 -13.6267 0.9734 24 6 3.7273 -12.5523 0.2361 25 6 4.7992 -12.9202 -0.5618 26 6 5.5121 -11.9624 -1.2550 27 6 5.1545 -10.6307 -1.1538 28 6 4.0905 -10.2628 -0.3547 29 6 3.3718 -11.2239 0.3395 30 6 0.8578 -7.3485 0.0266 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6841 -3.7141 -0.8920 35 1 0.4369 -4.7613 -0.8918 36 1 0.4375 -4.7625 0.8882 37 1 2.0496 -5.9222 2.1639 38 1 3.5990 -5.8877 1.2627 39 1 2.5889 -8.1723 2.4858 40 1 3.6795 -8.2089 1.0722 41 1 1.4393 -13.7373 2.4884 42 1 2.7862 -12.6392 2.8813 43 1 2.3135 -14.1499 0.2777 44 1 3.6751 -14.3345 1.4084 45 1 5.0778 -13.9606 -0.6418 46 1 6.3470 -12.2528 -1.8755 47 1 5.7097 -9.8789 -1.6951 48 1 3.8142 -9.2219 -0.2732 49 1 0.5484 -7.6115 -0.9849 50 1 -0.0116 -7.1167 0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724715284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:20 Heat of formation + Delta-G solvation = -39.966042 kcal Electronic energy + Delta-G solvation = -29899.831781 eV Core-core repulsion = 25891.989333 eV Total energy + Delta-G solvation = -4007.842448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27119 -39.72883 -38.20040 -37.50646 -35.19439 -33.66133 -33.03721 -32.17841 -30.87109 -29.94671 -29.64501 -27.85741 -26.30745 -24.33971 -23.99039 -23.11428 -22.80546 -21.51304 -20.62747 -20.17261 -19.45846 -18.03047 -17.43317 -17.16577 -16.92201 -16.05148 -16.02315 -15.53826 -15.43316 -14.94764 -14.71192 -14.46065 -14.24935 -14.03440 -13.83126 -13.64770 -13.45073 -13.22426 -13.19091 -12.98651 -12.80292 -12.59760 -12.38686 -12.23910 -12.12539 -11.67780 -11.52807 -11.34584 -11.12400 -11.03872 -10.84609 -10.65694 -10.49254 -10.34925 -10.14314 -10.12036 -9.98719 -9.69769 -9.17771 -8.99539 -8.87808 -8.82821 -6.91955 -5.76657 -3.05457 0.85143 0.96105 2.21152 2.54471 3.32156 3.42918 3.48190 3.50740 3.58009 4.07835 4.13199 4.25038 4.35443 4.43393 4.51116 4.58701 4.60965 4.68934 4.71955 4.77086 4.81656 4.99034 5.00106 5.05648 5.15207 5.26967 5.29273 5.36522 5.41869 5.53477 5.55628 5.59436 5.64177 5.66241 5.77705 5.81083 5.86847 5.99511 6.05630 6.09122 6.10069 6.12186 6.23018 6.35111 6.37339 6.55066 6.57570 6.82894 6.87688 7.24777 7.69799 7.92351 8.42451 9.53343 10.12126 10.46095 11.46337 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.001952 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.195699 B =14341.684068 C =15084.809350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.126 4.126 15 C 0.088 3.912 16 N -0.616 5.616 17 C 0.542 3.458 18 O -0.515 6.515 19 C 0.122 3.878 20 H 0.090 0.910 21 O -0.350 6.350 22 C 0.058 3.942 23 C -0.117 4.117 24 C -0.065 4.065 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.112 4.112 29 C -0.110 4.110 30 C 0.110 3.890 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.080 0.920 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -30.237 4.100 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.164 4.164 15 C -0.034 4.034 16 N -0.352 5.352 17 C 0.329 3.671 18 O -0.389 6.389 19 C 0.061 3.939 20 H 0.107 0.893 21 O -0.267 6.267 22 C -0.018 4.018 23 C -0.154 4.154 24 C -0.065 4.065 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.135 4.135 28 C -0.130 4.130 29 C -0.111 4.111 30 C -0.011 4.011 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.098 0.902 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.308 -30.426 3.658 32.332 hybrid contribution 0.550 0.971 0.020 1.116 sum 10.857 -29.455 3.677 31.607 Atomic orbital electron populations 1.69674 1.05109 1.25533 1.57881 1.24761 0.95551 0.97750 1.03122 0.86114 0.78748 0.84123 0.77196 1.20568 1.21870 1.21866 1.19269 0.91036 0.84192 1.42472 0.91157 1.42390 1.05932 1.00105 1.89494 1.20619 0.93458 0.85436 0.97728 1.21668 0.98672 0.92426 1.02627 1.22301 0.96913 0.94152 0.97987 0.89668 1.22740 1.02311 0.92570 0.98736 1.22337 0.90416 0.95372 0.95291 1.48457 1.32560 1.04578 1.49632 1.19509 0.83890 0.81288 0.82459 1.90728 1.32750 1.79171 1.36215 1.20680 0.88739 0.87856 0.96674 0.89285 1.88169 1.31934 1.24209 1.82423 1.22728 0.95839 0.88845 0.94424 1.21173 0.99048 0.96777 0.98441 1.19446 0.95968 0.93113 0.97977 1.21061 0.95557 0.99719 0.97308 1.21184 0.99619 0.93144 0.98976 1.21132 0.97194 0.96513 0.98693 1.21292 0.95664 0.99533 0.96543 1.19724 0.97149 0.93928 1.00326 1.22356 0.94573 0.84864 0.99323 0.93558 0.78299 0.96254 0.96549 0.91439 0.91502 0.89814 0.89399 0.91119 0.91050 0.87508 0.92237 0.89237 0.89336 0.85694 0.85656 0.85469 0.85209 0.90156 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.74 -18.53 5.60 -59.91 -0.34 -18.86 16 10 C 0.16 2.97 6.11 -4.04 -0.02 2.94 16 11 C -0.12 -1.73 4.84 -26.73 -0.13 -1.86 16 12 C -0.09 -1.09 3.06 -88.59 -0.27 -1.36 16 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.13 -1.23 5.60 -24.90 -0.14 -1.37 16 15 C 0.09 0.77 5.73 -3.06 -0.02 0.75 16 16 N -0.62 -7.15 2.97 -170.66 -0.51 -7.66 16 17 C 0.54 7.44 6.07 -10.98 -0.07 7.38 16 18 O -0.51 -9.24 17.04 -11.50 -0.20 -9.43 16 19 C 0.12 1.35 2.76 -29.06 -0.08 1.27 16 20 H 0.09 0.78 6.95 -51.93 -0.36 0.42 16 21 O -0.35 -4.14 10.19 -52.29 -0.53 -4.67 16 22 C 0.06 0.42 6.84 37.14 0.25 0.68 16 23 C -0.12 -0.81 6.00 -27.88 -0.17 -0.98 16 24 C -0.06 -0.59 5.78 -104.59 -0.60 -1.20 16 25 C -0.12 -0.93 9.67 -39.51 -0.38 -1.31 16 26 C -0.11 -0.86 10.05 -39.64 -0.40 -1.26 16 27 C -0.12 -1.01 10.05 -39.64 -0.40 -1.41 16 28 C -0.11 -1.11 8.82 -39.50 -0.35 -1.46 16 29 C -0.11 -1.16 5.45 -104.62 -0.57 -1.73 16 30 C 0.11 1.34 6.39 -2.65 -0.02 1.32 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 33 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 38 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.07 0.52 7.74 -51.93 -0.40 0.12 16 40 H 0.07 0.53 5.74 -51.93 -0.30 0.23 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.13 1.24 4.48 -52.49 -0.24 1.00 16 49 H 0.08 1.05 8.00 -51.93 -0.42 0.64 16 50 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -35.40 396.05 -11.37 -46.76 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.86 Total: 5.12 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.61 Total: -6.96 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.14 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.73 Total: -14.10 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.40 -11.37 -46.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.799 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds