Wall clock time and date at job start Wed Apr 1 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99943 * 2 1 4 4 H 1.48494 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47366 * 300.00217 * 3 2 1 6 6 H 1.48500 * 109.46923 * 60.00094 * 3 2 1 7 7 C 1.38803 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00552 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99710 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.88425 * 302.56956 * 12 11 10 14 14 C 1.55151 * 111.00694 * 66.45154 * 12 11 10 15 15 C 1.54328 * 102.94124 * 153.57631 * 14 12 11 16 16 N 1.47017 * 107.27075 * 337.80875 * 15 14 12 17 17 C 1.34782 * 125.64636 * 178.89889 * 16 15 14 18 18 O 1.21281 * 119.99778 * 184.24082 * 17 16 15 19 19 C 1.50697 * 120.00072 * 4.24450 * 17 16 15 20 20 H 1.09007 * 109.20564 * 25.36927 * 19 17 16 21 21 O 1.42728 * 109.33796 * 144.96242 * 19 17 16 22 22 C 1.43214 * 113.13349 * 171.99292 * 21 19 17 23 23 C 1.52974 * 108.47362 * 289.31779 * 22 21 19 24 24 C 1.50743 * 109.75792 * 49.22447 * 23 22 21 25 25 C 1.38599 * 118.76243 * 163.16201 * 24 23 22 26 26 C 1.38067 * 120.27828 * 179.74749 * 25 24 23 27 27 C 1.38256 * 119.86075 * 359.94764 * 26 25 24 28 28 C 1.38059 * 119.89653 * 0.32769 * 27 26 25 29 29 C 1.37900 * 121.35219 * 342.97403 * 24 23 22 30 30 C 1.47419 * 108.70502 * 359.16885 * 16 15 14 31 31 H 0.97004 * 119.99926 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99785 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47055 * 60.00699 * 10 9 7 34 34 H 1.08993 * 109.47600 * 300.00545 * 10 9 7 35 35 H 1.08996 * 109.46936 * 60.00319 * 11 10 9 36 36 H 1.08998 * 109.47168 * 300.00141 * 11 10 9 37 37 H 1.08998 * 110.72225 * 35.21889 * 14 12 11 38 38 H 1.08999 * 110.87744 * 272.00821 * 14 12 11 39 39 H 1.09005 * 109.88205 * 218.39001 * 15 14 12 40 40 H 1.09005 * 109.87973 * 97.23086 * 15 14 12 41 41 H 1.09003 * 109.63519 * 169.62723 * 22 21 19 42 42 H 1.08994 * 109.80727 * 49.11625 * 22 21 19 43 43 H 1.08997 * 109.42452 * 289.13420 * 23 22 21 44 44 H 1.09006 * 109.37200 * 169.27567 * 23 22 21 45 45 H 1.08000 * 119.86097 * 359.76537 * 25 24 23 46 46 H 1.08000 * 120.07065 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.05257 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.84663 * 179.76703 * 28 27 26 49 49 H 1.08998 * 110.36900 * 142.73812 * 30 16 15 50 50 H 1.08999 * 110.37120 * 265.06085 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 1 2.4978 -6.2067 -0.8609 14 6 2.6081 -6.3375 1.3251 15 6 2.7120 -7.8726 1.4450 16 7 1.6337 -8.4482 0.6281 17 6 1.3973 -9.7636 0.4533 18 8 0.5243 -10.1271 -0.3060 19 6 2.2177 -10.7825 1.2014 20 1 2.6023 -10.3315 2.1162 21 8 1.3943 -11.8996 1.5350 22 6 2.1310 -12.9967 2.0870 23 6 2.9694 -13.6267 0.9734 24 6 3.7273 -12.5523 0.2361 25 6 4.7992 -12.9202 -0.5618 26 6 5.5121 -11.9624 -1.2550 27 6 5.1545 -10.6307 -1.1538 28 6 4.0905 -10.2628 -0.3547 29 6 3.3718 -11.2239 0.3395 30 6 0.8578 -7.3485 0.0266 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6841 -3.7141 -0.8920 35 1 0.4369 -4.7613 -0.8918 36 1 0.4375 -4.7625 0.8882 37 1 2.0496 -5.9222 2.1639 38 1 3.5990 -5.8877 1.2627 39 1 2.5889 -8.1723 2.4858 40 1 3.6795 -8.2089 1.0722 41 1 1.4393 -13.7373 2.4884 42 1 2.7862 -12.6392 2.8813 43 1 2.3135 -14.1499 0.2777 44 1 3.6751 -14.3345 1.4084 45 1 5.0778 -13.9606 -0.6418 46 1 6.3470 -12.2528 -1.8755 47 1 5.7097 -9.8789 -1.6951 48 1 3.8142 -9.2219 -0.2732 49 1 0.5484 -7.6115 -0.9849 50 1 -0.0116 -7.1167 0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724715284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:19 Heat of formation + Delta-G solvation = -61.147103 kcal Electronic energy + Delta-G solvation = -29900.750261 eV Core-core repulsion = 25891.989333 eV Total energy + Delta-G solvation = -4008.760928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06228 -40.56990 -39.06826 -38.39571 -36.84402 -34.76699 -34.05373 -33.10990 -32.37048 -30.71027 -30.52735 -29.12953 -27.29650 -25.62942 -24.91443 -24.14597 -23.58365 -22.95276 -21.27621 -21.21988 -20.37093 -19.13883 -18.82485 -18.15959 -17.86486 -16.91724 -16.70427 -16.63686 -16.42707 -16.06737 -15.89039 -15.43801 -15.29378 -15.19182 -14.91185 -14.77113 -14.58133 -14.40864 -14.01354 -13.97974 -13.62112 -13.52117 -13.32042 -13.09449 -12.96153 -12.89741 -12.79129 -12.73521 -12.35734 -12.19462 -12.09385 -11.93394 -11.69425 -11.60069 -11.53967 -11.50519 -11.13028 -10.91428 -10.80811 -9.87648 -9.74016 -9.63099 -8.98104 -7.94359 -5.23218 0.20885 0.34625 1.25369 1.48291 1.49284 1.59354 1.63738 2.56981 2.68659 2.87002 3.26401 3.39772 3.42321 3.53729 3.60404 3.69427 3.77875 3.82246 3.96403 3.99757 4.17343 4.20719 4.23391 4.26938 4.33317 4.46222 4.46933 4.52216 4.56269 4.60293 4.66899 4.77357 4.78130 4.81237 4.87010 4.89470 4.93851 4.98511 5.05537 5.10213 5.17515 5.27936 5.39581 5.39984 5.46933 5.50364 5.51725 5.51948 5.90163 5.97975 6.28582 6.31044 6.91894 7.34220 8.12080 8.33292 9.29644 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.001952 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.195699 B =14341.684068 C =15084.809350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.103 4.103 12 C -0.083 4.083 13 H 0.091 0.909 14 C -0.121 4.121 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.536 3.464 18 O -0.570 6.570 19 C 0.127 3.873 20 H 0.111 0.889 21 O -0.383 6.383 22 C 0.050 3.950 23 C -0.115 4.115 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.132 4.132 30 C 0.110 3.890 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.032 0.968 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.065 0.935 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 -31.648 4.991 34.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.102 4.102 13 H 0.109 0.891 14 C -0.159 4.159 15 C -0.033 4.033 16 N -0.346 5.346 17 C 0.325 3.675 18 O -0.449 6.449 19 C 0.066 3.934 20 H 0.129 0.871 21 O -0.301 6.301 22 C -0.025 4.025 23 C -0.152 4.152 24 C -0.079 4.079 25 C -0.139 4.139 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.133 4.133 30 C -0.012 4.012 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.159 0.841 48 H 0.145 0.855 49 H 0.083 0.917 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.244 -31.857 4.574 34.802 hybrid contribution -0.308 1.325 -0.279 1.389 sum 12.936 -30.531 4.295 33.436 Atomic orbital electron populations 1.69834 1.06693 1.25971 1.59781 1.25621 0.96447 1.01306 1.03939 0.85052 0.78331 0.79677 0.76586 1.18757 1.22240 1.22036 1.19700 0.91600 0.85332 1.40722 0.90362 1.42671 1.05727 1.01559 1.89435 1.20803 0.94037 0.84333 0.98030 1.21491 0.97882 0.92663 1.02059 1.22121 0.96614 0.91860 0.99642 0.89093 1.22744 1.02580 0.93412 0.97169 1.22524 0.90225 0.94382 0.96121 1.48506 1.32792 1.04044 1.49246 1.20139 0.83383 0.82113 0.81906 1.90687 1.35302 1.80151 1.38755 1.20655 0.88201 0.87277 0.97230 0.87130 1.88123 1.33660 1.25399 1.82955 1.23038 0.96480 0.88077 0.94908 1.21228 0.99296 0.96592 0.98111 1.19799 0.96563 0.93129 0.98425 1.21409 0.94901 1.01100 0.96524 1.21544 1.00059 0.92762 0.98757 1.21400 0.97049 0.97568 0.98591 1.21383 0.96423 0.99463 0.97327 1.19823 0.97293 0.94900 1.01261 1.22257 0.94877 0.85438 0.98617 0.94073 0.79621 0.94962 0.96372 0.92492 0.91738 0.89977 0.88008 0.88994 0.89216 0.85768 0.90557 0.89892 0.86361 0.83201 0.83243 0.84062 0.85487 0.91692 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -37.96 5.60 -343.45 -1.92 -39.88 16 10 C 0.15 5.76 6.11 86.38 0.53 6.28 16 11 C -0.10 -3.04 4.84 30.60 0.15 -2.89 16 12 C -0.08 -1.85 3.06 -9.48 -0.03 -1.88 16 13 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 14 C -0.12 -2.12 5.60 31.78 0.18 -1.94 16 15 C 0.09 1.37 5.73 86.73 0.50 1.86 16 16 N -0.61 -13.94 2.97 -812.24 -2.41 -16.35 16 17 C 0.54 14.94 6.07 87.66 0.53 15.47 16 18 O -0.57 -21.49 17.04 13.27 0.23 -21.26 16 19 C 0.13 2.75 2.76 29.09 0.08 2.83 16 20 H 0.11 1.76 6.95 -2.38 -0.02 1.74 16 21 O -0.38 -8.94 10.19 -132.67 -1.35 -10.29 16 22 C 0.05 0.66 6.84 71.97 0.49 1.15 16 23 C -0.12 -1.37 6.00 29.85 0.18 -1.19 16 24 C -0.08 -1.32 5.78 -19.84 -0.11 -1.43 16 25 C -0.12 -1.61 9.67 22.32 0.22 -1.40 16 26 C -0.11 -1.49 10.05 22.23 0.22 -1.26 16 27 C -0.13 -2.00 10.05 22.23 0.22 -1.78 16 28 C -0.13 -2.41 8.82 22.32 0.20 -2.22 16 29 C -0.13 -2.65 5.45 -19.86 -0.11 -2.76 16 30 C 0.11 2.71 6.39 86.78 0.55 3.26 16 31 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.37 20.17 7.67 -92.71 -0.71 19.46 16 33 H 0.03 1.15 7.51 -2.38 -0.02 1.13 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 37 H 0.08 1.50 8.01 -2.39 -0.02 1.49 16 38 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 39 H 0.09 1.09 7.74 -2.38 -0.02 1.07 16 40 H 0.09 1.12 5.74 -2.38 -0.01 1.10 16 41 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 47 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.13 2.31 4.48 -2.91 -0.01 2.29 16 49 H 0.06 1.79 8.00 -2.39 -0.02 1.77 16 50 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 Total: -1.00 -78.23 396.05 2.19 -76.04 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.23 Total: 28.10 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.10 Total: -4.70 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -4.05 Total: -115.91 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.13 Total: -31.55 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.23 2.19 -76.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.891 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds