Wall clock time and date at job start Wed Apr 1 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61556 * 272.49646 * 11 10 9 13 13 C 1.53782 * 87.08529 * 220.01969 * 12 11 10 14 14 N 1.46499 * 113.61558 * 139.97980 * 13 12 11 15 15 C 1.34775 * 119.99582 * 107.50504 * 14 13 12 16 16 O 1.21281 * 120.00137 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99745 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47405 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.33744 * 304.67894 * 18 17 15 20 20 O 1.42729 * 109.33535 * 64.18621 * 18 17 15 21 21 C 1.43215 * 113.13851 * 171.94904 * 20 18 17 22 22 C 1.52975 * 108.46282 * 289.29656 * 21 20 18 23 23 C 1.50741 * 109.75515 * 49.23413 * 22 21 20 24 24 C 1.38592 * 118.75814 * 163.12737 * 23 22 21 25 25 C 1.38075 * 120.27349 * 179.75653 * 24 23 22 26 26 C 1.38258 * 119.86169 * 0.02562 * 25 24 23 27 27 C 1.38056 * 119.89676 * 0.08812 * 26 25 24 28 28 C 1.37908 * 121.35216 * 343.03771 * 23 22 21 29 29 C 1.53781 * 113.61737 * 174.99885 * 11 10 9 30 30 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.08996 * 112.84889 * 43.80542 * 11 10 9 35 35 H 1.09003 * 113.61530 * 334.56739 * 12 11 10 36 36 H 1.08999 * 113.61279 * 105.46747 * 12 11 10 37 37 H 1.09002 * 113.68887 * 270.87463 * 13 12 11 38 38 H 0.96994 * 119.99835 * 287.50353 * 14 13 12 39 39 H 1.08998 * 109.47055 * 299.99999 * 17 15 14 40 40 H 1.08998 * 109.47314 * 59.99570 * 17 15 14 41 41 H 1.09000 * 109.63724 * 169.60233 * 21 20 18 42 42 H 1.08993 * 109.63700 * 48.98856 * 21 20 18 43 43 H 1.09003 * 109.42210 * 289.14455 * 22 21 20 44 44 H 1.08999 * 109.37498 * 169.29309 * 22 21 20 45 45 H 1.08001 * 119.86323 * 359.73454 * 24 23 22 46 46 H 1.08000 * 120.06651 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.05135 * 180.09131 * 26 25 24 48 48 H 1.08001 * 119.84801 * 179.97438 * 27 26 25 49 49 H 1.08998 * 113.61870 * 254.53101 * 29 11 10 50 50 H 1.09006 * 113.61386 * 25.43647 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 0.6174 -5.2477 1.4091 13 6 0.7052 -6.6997 0.9101 14 7 1.2681 -7.6259 1.8957 15 6 0.4689 -8.5148 2.5183 16 8 -0.7163 -8.5476 2.2630 17 6 1.0480 -9.4681 3.5318 18 6 -0.0637 -10.3620 4.0846 19 1 -0.8623 -9.7383 4.4862 20 8 -0.5855 -11.1728 3.0322 21 6 -1.5037 -12.1706 3.4930 22 6 -0.7179 -13.2339 4.2624 23 6 0.1853 -12.5701 5.2703 24 6 0.7121 -13.3348 6.2991 25 6 1.5469 -12.7599 7.2367 26 6 1.8581 -11.4157 7.1490 27 6 1.3319 -10.6528 6.1258 28 6 0.4932 -11.2286 5.1840 29 6 1.7303 -6.2001 -0.1216 30 1 -0.4849 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 -0.8895 33 1 2.6847 -3.7145 0.8905 34 1 0.2375 -4.6705 -0.6938 35 1 1.3416 -5.0093 2.1882 36 1 -0.3954 -4.9329 1.6606 37 1 -0.2196 -7.0663 0.4645 38 1 2.2159 -7.5995 2.1001 39 1 1.8089 -10.0864 3.0556 40 1 1.4980 -8.9020 4.3474 41 1 -2.0037 -12.6300 2.6403 42 1 -2.2421 -11.7129 4.1513 43 1 -0.1162 -13.8158 3.5642 44 1 -1.4140 -13.8947 4.7791 45 1 0.4683 -14.3847 6.3680 46 1 1.9559 -13.3590 8.0368 47 1 2.5120 -10.9631 7.8799 48 1 1.5752 -9.6027 6.0584 49 1 1.6160 -6.6542 -1.1059 50 1 2.7588 -6.2220 0.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725074314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:02 Heat of formation + Delta-G solvation = -31.201125 kcal Electronic energy + Delta-G solvation = -28962.016694 eV Core-core repulsion = 24954.554321 eV Total energy + Delta-G solvation = -4007.462373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91926 -39.90252 -38.38260 -37.66366 -34.52234 -34.09678 -33.23001 -32.54800 -30.88787 -30.31732 -28.87259 -26.70807 -25.45845 -24.82493 -24.15558 -23.28433 -22.33762 -21.19535 -20.43062 -20.38335 -19.29950 -17.80288 -17.07425 -16.97624 -16.67750 -16.21494 -15.93439 -15.67334 -15.14266 -14.96735 -14.67715 -14.57907 -14.36845 -14.00647 -13.66704 -13.55324 -13.38701 -13.12608 -13.02962 -12.81120 -12.62920 -12.49680 -12.24132 -12.14820 -11.79919 -11.68483 -11.56610 -11.31955 -11.11291 -10.94742 -10.84934 -10.67797 -10.30686 -10.06821 -9.94218 -9.87435 -9.73334 -9.57888 -9.17512 -9.00202 -8.91782 -8.81545 -6.87339 -5.73191 -3.01446 0.89461 0.94952 2.63983 3.11855 3.30526 3.44952 3.48936 3.50179 3.52735 4.20754 4.22325 4.37981 4.48285 4.60640 4.66676 4.69817 4.71262 4.82739 4.85520 4.88039 4.94932 4.99750 5.09143 5.12217 5.15190 5.17273 5.26026 5.40734 5.49569 5.57030 5.57770 5.60778 5.67389 5.79774 5.88754 5.96156 6.02131 6.09849 6.10318 6.13613 6.16415 6.28788 6.36713 6.46550 6.56280 6.68063 6.82367 6.88156 6.96322 7.51979 7.72892 8.24924 8.45947 9.56894 10.16595 10.51037 11.49827 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.001670 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.196280 B =16767.336508 C =17444.196467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.119 3.881 14 N -0.721 5.721 15 C 0.514 3.486 16 O -0.528 6.528 17 C -0.135 4.135 18 C 0.148 3.852 19 H 0.080 0.920 20 O -0.356 6.356 21 C 0.060 3.940 22 C -0.117 4.117 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.111 4.111 28 C -0.114 4.114 29 C -0.138 4.138 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.399 0.601 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -31.598 13.119 34.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.177 4.177 13 C 0.015 3.985 14 N -0.371 5.371 15 C 0.300 3.700 16 O -0.404 6.404 17 C -0.174 4.174 18 C 0.090 3.910 19 H 0.098 0.902 20 O -0.274 6.274 21 C -0.017 4.017 22 C -0.154 4.154 23 C -0.070 4.070 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.129 4.129 28 C -0.114 4.114 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.233 0.767 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.089 0.911 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.964 -31.486 12.728 34.018 hybrid contribution 0.675 0.902 0.519 1.241 sum 2.639 -30.584 13.247 33.434 Atomic orbital electron populations 1.69673 1.05097 1.25468 1.57934 1.24750 0.95529 0.97687 1.03194 0.86122 0.78741 0.84194 0.77169 1.20600 1.21885 1.21917 1.19288 0.91038 0.84273 1.42380 0.91200 1.42367 1.05916 0.99979 1.89350 1.20599 0.92888 0.85172 0.97549 1.22531 0.99458 0.93875 0.97159 1.23444 1.02430 0.94156 0.97666 1.22642 0.98225 0.88214 0.89442 1.46047 1.11788 1.36496 1.42803 1.20414 0.87011 0.80665 0.81922 1.90725 1.15667 1.70080 1.63916 1.21817 0.98989 0.97189 0.99449 1.20506 0.94853 0.89993 0.85646 0.90210 1.88164 1.61268 1.47053 1.30957 1.22591 0.91259 0.88585 0.99247 1.21185 0.98291 0.98794 0.97168 1.19524 0.98288 0.92999 0.96239 1.21083 0.98157 0.99709 0.94785 1.21141 0.98152 0.95316 0.98930 1.21126 1.00206 0.94266 0.98349 1.21106 0.97104 1.00136 0.94517 1.20236 0.99050 0.94369 0.97753 1.23336 0.98697 0.96705 0.98892 0.93598 0.78246 0.96374 0.96420 0.88896 0.89870 0.91211 0.86996 0.76728 0.87901 0.87337 0.88203 0.92593 0.89622 0.89747 0.85988 0.85959 0.85780 0.85577 0.91076 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.86 5.60 -59.91 -0.34 -19.19 16 10 C 0.17 3.32 6.10 -4.05 -0.02 3.30 16 11 C -0.11 -1.78 3.75 -89.81 -0.34 -2.11 16 12 C -0.14 -2.08 7.43 -25.92 -0.19 -2.27 16 13 C 0.12 1.54 4.24 -67.12 -0.28 1.25 16 14 N -0.72 -7.76 5.35 -53.02 -0.28 -8.04 16 15 C 0.51 6.23 7.70 -10.99 -0.08 6.15 16 16 O -0.53 -8.65 14.98 -9.77 -0.15 -8.79 16 17 C -0.13 -1.16 5.10 -27.88 -0.14 -1.31 16 18 C 0.15 1.49 2.28 -27.91 -0.06 1.42 16 19 H 0.08 0.89 7.96 -51.93 -0.41 0.47 16 20 O -0.36 -4.12 9.60 -50.56 -0.49 -4.61 16 21 C 0.06 0.51 6.85 37.14 0.25 0.76 16 22 C -0.12 -0.81 6.00 -27.88 -0.17 -0.97 16 23 C -0.07 -0.58 5.78 -104.59 -0.60 -1.19 16 24 C -0.12 -0.85 9.67 -39.51 -0.38 -1.23 16 25 C -0.12 -0.78 10.05 -39.63 -0.40 -1.18 16 26 C -0.12 -0.83 10.05 -39.64 -0.40 -1.23 16 27 C -0.11 -0.83 9.08 -39.50 -0.36 -1.19 16 28 C -0.11 -1.00 5.46 -104.62 -0.57 -1.57 16 29 C -0.14 -1.70 7.39 -25.92 -0.19 -1.89 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.36 7.84 -51.93 -0.41 -0.05 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.11 1.62 7.46 -51.93 -0.39 1.24 16 38 H 0.40 3.14 8.73 -40.82 -0.36 2.78 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.66 6.33 -51.93 -0.33 0.33 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 48 H 0.13 0.73 6.46 -52.49 -0.34 0.39 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -35.30 403.86 -11.65 -46.95 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.99 Total: 8.69 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -4.19 Total: -10.75 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.11 Total: -55.21 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.63 Total: -13.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.30 -11.65 -46.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725074314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.747 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds