Wall clock time and date at job start Wed Apr 1 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61556 * 272.49646 * 11 10 9 13 13 C 1.53782 * 87.08529 * 220.01969 * 12 11 10 14 14 N 1.46499 * 113.61558 * 139.97980 * 13 12 11 15 15 C 1.34775 * 119.99582 * 107.50504 * 14 13 12 16 16 O 1.21281 * 120.00137 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99745 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47405 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.33744 * 304.67894 * 18 17 15 20 20 O 1.42729 * 109.33535 * 64.18621 * 18 17 15 21 21 C 1.43215 * 113.13851 * 171.94904 * 20 18 17 22 22 C 1.52975 * 108.46282 * 289.29656 * 21 20 18 23 23 C 1.50741 * 109.75515 * 49.23413 * 22 21 20 24 24 C 1.38592 * 118.75814 * 163.12737 * 23 22 21 25 25 C 1.38075 * 120.27349 * 179.75653 * 24 23 22 26 26 C 1.38258 * 119.86169 * 0.02562 * 25 24 23 27 27 C 1.38056 * 119.89676 * 0.08812 * 26 25 24 28 28 C 1.37908 * 121.35216 * 343.03771 * 23 22 21 29 29 C 1.53781 * 113.61737 * 174.99885 * 11 10 9 30 30 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.08996 * 112.84889 * 43.80542 * 11 10 9 35 35 H 1.09003 * 113.61530 * 334.56739 * 12 11 10 36 36 H 1.08999 * 113.61279 * 105.46747 * 12 11 10 37 37 H 1.09002 * 113.68887 * 270.87463 * 13 12 11 38 38 H 0.96994 * 119.99835 * 287.50353 * 14 13 12 39 39 H 1.08998 * 109.47055 * 299.99999 * 17 15 14 40 40 H 1.08998 * 109.47314 * 59.99570 * 17 15 14 41 41 H 1.09000 * 109.63724 * 169.60233 * 21 20 18 42 42 H 1.08993 * 109.63700 * 48.98856 * 21 20 18 43 43 H 1.09003 * 109.42210 * 289.14455 * 22 21 20 44 44 H 1.08999 * 109.37498 * 169.29309 * 22 21 20 45 45 H 1.08001 * 119.86323 * 359.73454 * 24 23 22 46 46 H 1.08000 * 120.06651 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.05135 * 180.09131 * 26 25 24 48 48 H 1.08001 * 119.84801 * 179.97438 * 27 26 25 49 49 H 1.08998 * 113.61870 * 254.53101 * 29 11 10 50 50 H 1.09006 * 113.61386 * 25.43647 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 0.6174 -5.2477 1.4091 13 6 0.7052 -6.6997 0.9101 14 7 1.2681 -7.6259 1.8957 15 6 0.4689 -8.5148 2.5183 16 8 -0.7163 -8.5476 2.2630 17 6 1.0480 -9.4681 3.5318 18 6 -0.0637 -10.3620 4.0846 19 1 -0.8623 -9.7383 4.4862 20 8 -0.5855 -11.1728 3.0322 21 6 -1.5037 -12.1706 3.4930 22 6 -0.7179 -13.2339 4.2624 23 6 0.1853 -12.5701 5.2703 24 6 0.7121 -13.3348 6.2991 25 6 1.5469 -12.7599 7.2367 26 6 1.8581 -11.4157 7.1490 27 6 1.3319 -10.6528 6.1258 28 6 0.4932 -11.2286 5.1840 29 6 1.7303 -6.2001 -0.1216 30 1 -0.4849 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 -0.8895 33 1 2.6847 -3.7145 0.8905 34 1 0.2375 -4.6705 -0.6938 35 1 1.3416 -5.0093 2.1882 36 1 -0.3954 -4.9329 1.6606 37 1 -0.2196 -7.0663 0.4645 38 1 2.2159 -7.5995 2.1001 39 1 1.8089 -10.0864 3.0556 40 1 1.4980 -8.9020 4.3474 41 1 -2.0037 -12.6300 2.6403 42 1 -2.2421 -11.7129 4.1513 43 1 -0.1162 -13.8158 3.5642 44 1 -1.4140 -13.8947 4.7791 45 1 0.4683 -14.3847 6.3680 46 1 1.9559 -13.3590 8.0368 47 1 2.5120 -10.9631 7.8799 48 1 1.5752 -9.6027 6.0584 49 1 1.6160 -6.6542 -1.1059 50 1 2.7588 -6.2220 0.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725074314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:01 Heat of formation + Delta-G solvation = -53.153209 kcal Electronic energy + Delta-G solvation = -28962.968608 eV Core-core repulsion = 24954.554321 eV Total energy + Delta-G solvation = -4008.414287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61504 -40.88089 -39.45367 -38.36839 -36.32110 -34.77912 -34.47194 -33.19576 -32.76662 -30.94748 -29.58802 -28.31923 -26.61323 -25.74887 -24.94703 -24.67649 -23.27409 -22.34576 -21.39867 -20.99139 -20.54502 -19.05839 -18.48325 -17.82498 -17.45902 -17.16672 -16.77274 -16.53983 -16.28574 -16.18507 -15.85212 -15.40728 -15.28520 -15.12891 -14.91821 -14.67200 -14.51707 -14.32514 -14.11971 -13.48716 -13.39893 -13.34619 -13.25349 -13.05385 -12.98167 -12.89081 -12.74700 -12.61687 -12.38185 -12.14202 -12.06638 -11.88385 -11.82806 -11.54986 -11.37113 -11.27951 -10.91054 -10.79544 -10.55018 -9.94149 -9.70609 -9.54611 -8.97718 -7.94470 -5.23214 0.35635 0.44104 1.47251 1.48519 1.58663 1.69630 2.23326 2.56708 2.72387 2.86638 3.38657 3.53571 3.61495 3.62492 3.65861 3.81395 3.89843 3.90686 3.95169 4.02935 4.14311 4.23182 4.29272 4.30524 4.32796 4.44742 4.58196 4.61025 4.65212 4.66992 4.68914 4.82499 4.82687 4.89094 4.91376 4.97130 4.97691 5.03107 5.08343 5.16729 5.16745 5.26508 5.45010 5.51151 5.52091 5.60626 5.62768 5.68989 6.07423 6.19148 6.28109 6.64777 7.33668 7.34958 8.12010 8.33906 9.29570 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.001670 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.196280 B =16767.336508 C =17444.196467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.165 3.835 11 C -0.115 4.115 12 C -0.139 4.139 13 C 0.130 3.870 14 N -0.708 5.708 15 C 0.511 3.489 16 O -0.577 6.577 17 C -0.125 4.125 18 C 0.148 3.852 19 H 0.057 0.943 20 O -0.383 6.383 21 C 0.053 3.947 22 C -0.111 4.111 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.130 4.130 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.140 0.860 49 H 0.085 0.915 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -33.174 14.222 36.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.134 4.134 12 C -0.178 4.178 13 C 0.024 3.976 14 N -0.359 5.359 15 C 0.298 3.702 16 O -0.456 6.456 17 C -0.164 4.164 18 C 0.090 3.910 19 H 0.075 0.925 20 O -0.302 6.302 21 C -0.024 4.024 22 C -0.148 4.148 23 C -0.088 4.088 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.130 4.130 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.254 0.746 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.158 0.842 49 H 0.103 0.897 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.722 -33.102 13.839 36.188 hybrid contribution -0.166 1.327 0.208 1.354 sum 4.557 -31.775 14.048 35.040 Atomic orbital electron populations 1.69840 1.06744 1.25951 1.59761 1.25623 0.96423 1.01300 1.03889 0.85038 0.78294 0.79618 0.76601 1.18776 1.22098 1.22110 1.19729 0.91607 0.85428 1.40814 0.90401 1.42632 1.05628 1.01412 1.89299 1.20786 0.93487 0.84178 0.97705 1.22435 0.98805 0.94533 0.97629 1.23436 1.01178 0.95865 0.97271 1.22289 0.98121 0.87309 0.89843 1.45894 1.12639 1.35502 1.41903 1.21047 0.86431 0.80757 0.81934 1.90710 1.17915 1.71483 1.65490 1.21853 0.98712 0.96559 0.99310 1.20472 0.94609 0.90063 0.85901 0.92532 1.88111 1.61926 1.47886 1.32319 1.22763 0.91170 0.88632 0.99822 1.21153 0.98345 0.98305 0.96975 1.19777 0.98837 0.93182 0.97032 1.21340 0.98046 1.00604 0.94420 1.21487 0.97608 0.95608 0.99186 1.21433 1.00224 0.94491 0.98423 1.21318 0.96854 1.00996 0.94428 1.20207 1.00170 0.94682 0.97976 1.23233 0.99287 0.93208 0.99500 0.94092 0.79678 0.95995 0.95599 0.90346 0.89395 0.93511 0.88784 0.74587 0.86269 0.84440 0.87283 0.93199 0.89291 0.87851 0.84202 0.83831 0.83821 0.84209 0.89662 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.84 9.99 84.04 0.84 -13.00 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.75 -38.83 5.60 -343.45 -1.92 -40.75 16 10 C 0.16 6.46 6.10 86.38 0.53 6.99 16 11 C -0.11 -3.62 3.75 -10.27 -0.04 -3.66 16 12 C -0.14 -4.17 7.43 31.12 0.23 -3.93 16 13 C 0.13 3.25 4.24 45.52 0.19 3.44 16 14 N -0.71 -14.08 5.35 -440.03 -2.36 -16.43 16 15 C 0.51 12.11 7.70 87.66 0.68 12.78 16 16 O -0.58 -19.48 14.98 11.62 0.17 -19.30 16 17 C -0.13 -2.00 5.10 29.85 0.15 -1.85 16 18 C 0.15 2.98 2.28 29.83 0.07 3.05 16 19 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 20 O -0.38 -9.08 9.60 -134.33 -1.29 -10.37 16 21 C 0.05 0.91 6.85 71.97 0.49 1.40 16 22 C -0.11 -1.44 6.00 29.85 0.18 -1.26 16 23 C -0.09 -1.37 5.78 -19.85 -0.11 -1.48 16 24 C -0.13 -1.55 9.67 22.32 0.22 -1.33 16 25 C -0.12 -1.31 10.05 22.24 0.22 -1.09 16 26 C -0.13 -1.44 10.05 22.23 0.22 -1.22 16 27 C -0.12 -1.58 9.08 22.32 0.20 -1.38 16 28 C -0.13 -2.19 5.46 -19.86 -0.11 -2.30 16 29 C -0.11 -2.55 7.39 31.12 0.23 -2.32 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 32 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.03 0.99 7.84 -2.38 -0.02 0.97 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.09 2.55 7.90 -2.39 -0.02 2.53 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.77 7.46 -2.39 -0.02 2.75 16 38 H 0.42 5.31 8.73 -92.71 -0.81 4.50 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.14 1.34 6.33 -2.39 -0.02 1.33 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 0.88 8.07 -2.39 -0.02 0.86 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.14 1.33 6.46 -2.91 -0.02 1.31 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 1.96 8.08 -2.38 -0.02 1.94 16 Total: -1.00 -78.03 403.86 1.01 -77.02 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.57 Total: 33.22 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.66 Total: -11.42 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.00 Total: -117.88 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.12 Total: -29.67 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -78.03 1.01 -77.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725074314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.870 kcal (2) G-P(sol) polarization free energy of solvation -78.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds