Wall clock time and date at job start Wed Apr 1 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47598 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47071 * 300.00469 * 3 2 1 6 6 H 1.48504 * 109.47313 * 60.00182 * 3 2 1 7 7 C 1.38814 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00033 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.90771 * 316.25090 * 11 10 9 13 13 C 1.53779 * 113.61529 * 87.50494 * 11 10 9 14 14 C 1.53779 * 87.08402 * 139.98073 * 13 11 10 15 15 H 1.08997 * 113.61646 * 220.02209 * 14 13 11 16 16 N 1.46499 * 113.61746 * 89.11614 * 14 13 11 17 17 C 1.34771 * 119.99903 * 107.50534 * 16 14 13 18 18 O 1.21282 * 120.00369 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99769 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.87154 * 275.44514 * 19 17 16 21 21 C 1.38237 * 119.99986 * 269.02658 * 20 19 17 22 22 C 1.38231 * 119.99890 * 179.76281 * 21 20 19 23 23 C 1.38237 * 119.99921 * 0.51345 * 22 21 20 24 24 C 1.38233 * 120.00136 * 359.73747 * 23 22 21 25 25 C 1.38232 * 119.99853 * 89.29903 * 20 19 17 26 26 C 1.54103 * 109.87855 * 154.28138 * 19 17 16 27 27 C 1.54812 * 104.19135 * 242.60338 * 26 19 17 28 28 C 1.54997 * 102.08937 * 20.88235 * 27 26 19 29 29 O 1.43745 * 109.88203 * 36.45337 * 19 17 16 30 30 C 1.53784 * 113.61233 * 185.00081 * 11 10 9 31 31 H 0.96999 * 119.99935 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99720 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.46583 * 60.00379 * 10 9 7 34 34 H 1.09001 * 109.46856 * 300.00837 * 10 9 7 35 35 H 1.09006 * 113.61307 * 25.43275 * 13 11 10 36 36 H 1.08999 * 113.69146 * 254.53761 * 13 11 10 37 37 H 0.97001 * 119.99349 * 287.50724 * 16 14 13 38 38 H 1.08004 * 119.99609 * 359.97438 * 21 20 19 39 39 H 1.07997 * 120.00257 * 180.22725 * 22 21 20 40 40 H 1.07995 * 120.00201 * 179.72677 * 23 22 21 41 41 H 1.08000 * 120.00236 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.00340 * 0.02562 * 25 20 19 43 43 H 1.08998 * 110.48905 * 1.28352 * 26 19 17 44 44 H 1.09001 * 110.48713 * 123.93055 * 26 19 17 45 45 H 1.08994 * 110.90932 * 262.68546 * 27 26 19 46 46 H 1.09005 * 110.90491 * 139.07686 * 27 26 19 47 47 H 1.08992 * 110.61964 * 204.47114 * 28 27 26 48 48 H 1.09001 * 110.61737 * 81.47635 * 28 27 26 49 49 H 1.09004 * 113.61451 * 105.47254 * 30 11 10 50 50 H 1.08994 * 113.61477 * 334.56556 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.2368 -4.6710 0.6928 13 6 0.6177 -5.2477 -1.4091 14 6 0.7055 -6.6996 -0.9101 15 1 1.1243 -7.3888 -1.6433 16 7 -0.5381 -7.1907 -0.3113 17 6 -1.2946 -8.0899 -0.9712 18 8 -0.9461 -8.4922 -2.0610 19 6 -2.5742 -8.5945 -0.3555 20 6 -2.2767 -9.7394 0.5782 21 6 -2.2910 -11.0384 0.1056 22 6 -2.0133 -12.0881 0.9610 23 6 -1.7316 -11.8397 2.2914 24 6 -1.7224 -10.5411 2.7651 25 6 -1.9950 -9.4909 1.9085 26 6 -3.5424 -9.0550 -1.4625 27 6 -4.7613 -8.1118 -1.3171 28 6 -4.1530 -6.9113 -0.5482 29 8 -3.2224 -7.5325 0.3644 30 6 1.7307 -6.2001 0.1216 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6848 -3.7144 0.8895 34 1 2.6850 -3.7144 -0.8905 35 1 1.3419 -5.0092 -2.1881 36 1 -0.3949 -4.9335 -1.6620 37 1 -0.8170 -6.8685 0.5601 38 1 -2.5158 -11.2327 -0.9327 39 1 -2.0208 -13.1027 0.5910 40 1 -1.5190 -12.6602 2.9606 41 1 -1.5028 -10.3471 3.8046 42 1 -1.9885 -8.4764 2.2789 43 1 -3.0835 -8.9369 -2.4441 44 1 -3.8405 -10.0911 -1.3018 45 1 -5.5525 -8.5853 -0.7359 46 1 -5.1312 -7.8008 -2.2942 47 1 -4.9272 -6.3743 -0.0004 48 1 -3.6310 -6.2421 -1.2322 49 1 1.6164 -6.6542 1.1059 50 1 2.7591 -6.2219 -0.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725368471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:50 Heat of formation + Delta-G solvation = -39.775524 kcal Electronic energy + Delta-G solvation = -30395.441188 eV Core-core repulsion = 26387.607001 eV Total energy + Delta-G solvation = -4007.834187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.21076 -40.65085 -39.49354 -38.93888 -36.37300 -34.56142 -33.67166 -33.05059 -32.53547 -31.71130 -29.27229 -28.45121 -26.67540 -25.75181 -24.88584 -23.88445 -23.38244 -22.79536 -22.23795 -20.98099 -20.33813 -19.07875 -18.78505 -18.47028 -17.50548 -17.02035 -16.70361 -16.58681 -16.05627 -15.84402 -15.74068 -15.67814 -15.49935 -15.22125 -15.01417 -14.74036 -14.46529 -14.26711 -14.09953 -13.74489 -13.65552 -13.42533 -13.14216 -13.07045 -12.94262 -12.83030 -12.72786 -12.27655 -12.24642 -12.13209 -11.94394 -11.90555 -11.80686 -11.77909 -11.58233 -11.39518 -11.17739 -10.88713 -10.64742 -10.11308 -9.84483 -9.71605 -8.98800 -7.95628 -5.24101 0.27787 0.47188 1.39279 1.46385 1.47313 1.57484 2.00880 2.53040 2.55393 2.83255 3.37179 3.41139 3.51302 3.54212 3.57745 3.62025 3.89161 3.91560 3.96403 4.04423 4.06281 4.14097 4.25201 4.31076 4.34466 4.51442 4.56527 4.62796 4.64890 4.71079 4.74213 4.80519 4.83906 4.87414 4.88060 4.90543 4.94958 5.01165 5.07185 5.11574 5.12874 5.24318 5.31452 5.44619 5.48747 5.53142 5.59839 5.60812 5.73227 6.05212 6.27141 6.41478 7.04786 7.32904 8.10331 8.33051 9.28262 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002370 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.526205 B =11809.503785 C =12367.626165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.161 3.839 11 C -0.110 4.110 12 H 0.081 0.919 13 C -0.140 4.140 14 C 0.122 3.878 15 H 0.096 0.904 16 N -0.689 5.689 17 C 0.511 3.489 18 O -0.567 6.567 19 C 0.137 3.863 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.104 4.104 26 C -0.143 4.143 27 C -0.144 4.144 28 C 0.033 3.967 29 O -0.363 6.363 30 C -0.116 4.116 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.411 0.589 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.051 0.949 49 H 0.087 0.913 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 -27.944 2.804 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.178 4.178 14 C 0.016 3.984 15 H 0.114 0.886 16 N -0.339 5.339 17 C 0.296 3.704 18 O -0.446 6.446 19 C 0.094 3.906 20 C -0.100 4.100 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.122 4.122 26 C -0.181 4.181 27 C -0.182 4.182 28 C -0.042 4.042 29 O -0.282 6.282 30 C -0.155 4.155 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.248 0.752 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.136 0.864 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.847 -28.066 2.257 29.229 hybrid contribution -0.162 1.683 -0.015 1.691 sum -8.009 -26.383 2.242 27.663 Atomic orbital electron populations 1.69827 1.06624 1.25961 1.59704 1.25590 0.96446 1.01169 1.03846 0.85064 0.78235 0.79732 0.76685 1.19014 1.22080 1.21906 1.19697 0.91514 0.85473 1.40899 0.90676 1.42594 1.05591 1.01294 1.89297 1.20808 0.93664 0.84444 0.97569 1.22653 0.98479 0.94388 0.97363 0.90047 1.23398 1.01283 0.95713 0.97433 1.21844 0.85059 0.94570 0.96897 0.88607 1.45614 1.22772 1.42818 1.22695 1.21206 0.86082 0.78331 0.84734 1.90658 1.73002 1.59326 1.21653 1.20892 0.90201 0.87474 0.92050 1.19412 1.03570 0.92760 0.94222 1.21252 0.99706 0.91665 1.00787 1.21440 0.99262 0.99687 0.93816 1.21582 0.98200 0.97424 0.96083 1.21461 0.99661 0.92689 1.00669 1.21123 0.98066 1.00300 0.92723 1.23125 0.94668 1.02362 0.97895 1.23156 0.97604 0.94977 1.02432 1.23857 0.92034 0.95757 0.92595 1.88907 1.56517 1.46826 1.35986 1.23230 0.99048 0.93511 0.99680 0.94037 0.79593 0.96011 0.96015 0.89315 0.93186 0.75241 0.84949 0.83465 0.83404 0.83952 0.85674 0.89968 0.87656 0.88648 0.88465 0.86388 0.93071 0.89394 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.75 -38.75 5.60 -343.46 -1.92 -40.68 16 10 C 0.16 6.46 6.10 86.38 0.53 6.99 16 11 C -0.11 -3.48 3.63 -10.27 -0.04 -3.52 16 12 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 13 C -0.14 -4.35 7.43 31.12 0.23 -4.11 16 14 C 0.12 3.22 4.32 45.52 0.20 3.42 16 15 H 0.10 2.66 7.47 -2.39 -0.02 2.64 16 16 N -0.69 -17.69 5.18 -440.04 -2.28 -19.97 16 17 C 0.51 14.02 6.65 87.66 0.58 14.60 16 18 O -0.57 -18.80 15.17 -3.04 -0.05 -18.85 16 19 C 0.14 3.04 0.91 -11.91 -0.01 3.03 16 20 C -0.10 -2.04 4.84 -19.87 -0.10 -2.14 16 21 C -0.12 -2.08 8.74 22.27 0.19 -1.88 16 22 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.12 -1.54 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 25 C -0.10 -2.00 9.36 22.27 0.21 -1.79 16 26 C -0.14 -2.70 5.64 31.59 0.18 -2.52 16 27 C -0.14 -2.19 7.15 31.90 0.23 -1.96 16 28 C 0.03 0.64 7.66 72.67 0.56 1.19 16 29 O -0.36 -8.11 9.30 -148.98 -1.39 -9.50 16 30 C -0.12 -2.77 7.39 31.12 0.23 -2.54 16 31 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.37 20.66 7.67 -92.70 -0.71 19.95 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.02 0.88 7.84 -2.39 -0.02 0.86 16 35 H 0.09 2.78 7.90 -2.38 -0.02 2.76 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.41 9.74 8.20 -92.71 -0.76 8.98 16 38 H 0.13 2.14 6.44 -2.91 -0.02 2.12 16 39 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.13 2.40 7.55 -2.91 -0.02 2.38 16 43 H 0.08 1.83 6.74 -2.39 -0.02 1.82 16 44 H 0.11 1.63 5.78 -2.39 -0.01 1.62 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -72.13 403.77 1.13 -71.00 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.52 Total: 42.28 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.97 Total: -13.03 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -3.92 Total: -120.72 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.43 Total: -28.35 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.13 1.13 -71.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725368471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.226 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds