Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48495 * 109.46916 * 239.99871 * 3 2 1 5 5 H 1.48498 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47161 * 119.99399 * 3 2 1 7 7 C 1.38817 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65083 * 359.95386 * 9 7 2 11 11 C 1.54323 * 107.27216 * 178.98027 * 10 9 7 12 12 C 1.55158 * 102.94185 * 337.80502 * 11 10 9 13 13 O 1.42896 * 111.00460 * 277.42994 * 12 11 10 14 14 C 1.53001 * 111.00484 * 153.57854 * 12 11 10 15 15 N 1.46493 * 109.47109 * 188.11574 * 14 12 11 16 16 C 1.34775 * 120.00013 * 184.40130 * 15 14 12 17 17 O 1.21279 * 120.00301 * 4.68429 * 16 15 14 18 18 C 1.50701 * 120.00125 * 184.68436 * 16 15 14 19 19 C 1.52999 * 115.54995 * 293.81515 * 18 16 15 20 20 C 1.50707 * 109.47244 * 295.16443 * 19 18 16 21 21 C 1.38228 * 120.00026 * 275.41098 * 20 19 18 22 22 C 1.38238 * 120.00052 * 179.76513 * 21 20 19 23 23 C 1.38232 * 119.99488 * 0.49963 * 22 21 20 24 24 C 1.38232 * 120.00327 * 359.75244 * 23 22 21 25 25 C 1.38232 * 119.99650 * 95.67576 * 20 19 18 26 26 C 1.52999 * 117.49828 * 148.14286 * 18 16 15 27 27 C 1.52999 * 117.49816 * 79.48121 * 18 16 15 28 28 C 1.47427 * 125.64760 * 179.97438 * 9 7 2 29 29 H 0.96996 * 119.99656 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.88395 * 59.56043 * 10 9 7 31 31 H 1.09003 * 109.87954 * 298.39516 * 10 9 7 32 32 H 1.08999 * 110.71743 * 219.44684 * 11 10 9 33 33 H 1.08993 * 110.72434 * 96.17069 * 11 10 9 34 34 H 0.96701 * 113.99991 * 173.64776 * 13 12 11 35 35 H 1.09005 * 109.46909 * 308.11375 * 14 12 11 36 36 H 1.08995 * 109.46994 * 68.11443 * 14 12 11 37 37 H 0.97003 * 120.00128 * 4.39508 * 15 14 12 38 38 H 1.08996 * 109.47398 * 55.16492 * 19 18 16 39 39 H 1.08999 * 109.47327 * 175.16799 * 19 18 16 40 40 H 1.08007 * 119.99968 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00105 * 180.22899 * 22 21 20 42 42 H 1.08001 * 119.99827 * 179.72175 * 23 22 21 43 43 H 1.07999 * 120.00240 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00069 * 0.02562 * 25 20 19 45 45 H 1.08994 * 117.50034 * 359.97438 * 26 18 16 46 46 H 1.09011 * 117.49720 * 145.02139 * 26 18 16 47 47 H 1.09005 * 117.49913 * 214.97360 * 27 18 16 48 48 H 1.08998 * 117.50204 * 359.97438 * 27 18 16 49 49 H 1.08999 * 110.37020 * 85.24752 * 28 9 7 50 50 H 1.09009 * 110.36490 * 322.92805 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0010 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8517 -4.6563 -0.6104 13 8 0.8578 -4.5781 -2.0372 14 6 1.0369 -6.1009 -0.1418 15 7 2.3594 -6.5810 -0.5499 16 6 2.7111 -7.8619 -0.3222 17 8 1.9043 -8.6389 0.1427 18 6 4.1071 -8.3288 -0.6451 19 6 4.4752 -8.3311 -2.1302 20 6 3.6170 -9.3329 -2.8589 21 6 3.9866 -10.6644 -2.8930 22 6 3.1969 -11.5842 -3.5574 23 6 2.0430 -11.1706 -4.1963 24 6 1.6761 -9.8381 -4.1666 25 6 2.4631 -8.9193 -3.4979 26 6 4.7042 -9.4308 0.2324 27 6 5.2138 -7.9927 0.3564 28 6 1.9334 -3.7312 0.0005 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5579 -2.0523 -0.8826 31 1 -0.5541 -2.0843 0.9029 32 1 -1.2987 -4.2516 -0.6753 33 1 -0.6315 -4.4179 0.9819 34 1 1.6896 -4.8586 -2.4429 35 1 0.9539 -6.1440 0.9443 36 1 0.2678 -6.7297 -0.5902 37 1 2.9819 -5.9769 -0.9842 38 1 4.3082 -7.3381 -2.5474 39 1 5.5250 -8.6012 -2.2439 40 1 4.8907 -10.9868 -2.3977 41 1 3.4837 -12.6251 -3.5809 42 1 1.4283 -11.8884 -4.7192 43 1 0.7748 -9.5149 -4.6662 44 1 2.1768 -7.8782 -3.4752 45 1 4.0875 -9.8178 1.0435 46 1 5.3595 -10.1573 -0.2483 47 1 6.2043 -7.7737 -0.0426 48 1 4.9324 -7.4336 1.2487 49 1 2.1670 -4.0420 1.0188 50 1 2.8327 -3.7406 -0.6155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733485515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = -10.215076 kcal Electronic energy + Delta-G solvation = -30656.479094 eV Core-core repulsion = 26649.926744 eV Total energy + Delta-G solvation = -4006.552349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.55012 -39.25951 -38.55785 -36.84411 -35.08378 -34.12657 -32.53905 -32.10184 -31.03529 -29.68621 -28.41274 -27.42735 -25.84601 -24.18317 -22.88917 -22.76569 -22.48704 -21.57341 -20.37501 -20.01705 -19.44068 -17.52237 -16.92472 -16.76633 -16.21904 -15.84749 -15.71157 -15.31621 -15.16823 -14.73318 -14.66986 -14.42540 -14.08070 -13.80895 -13.57150 -13.45494 -13.24761 -13.05797 -12.86258 -12.55766 -12.36674 -12.20757 -11.93142 -11.79483 -11.72744 -11.54266 -11.18614 -11.01445 -10.89162 -10.76443 -10.72798 -10.42231 -10.32169 -10.16528 -10.12549 -9.80585 -9.68313 -9.41097 -9.07016 -9.05185 -8.85350 -8.60447 -6.85348 -5.72922 -3.06799 1.18687 1.26686 2.55585 3.03742 3.38877 3.42041 3.42846 3.44671 3.66058 4.32662 4.44576 4.47256 4.48945 4.56030 4.62071 4.73756 4.84510 4.86902 4.93047 4.98059 5.13457 5.20731 5.33576 5.36667 5.37312 5.40365 5.50592 5.52280 5.57406 5.64876 5.66276 5.82592 5.86672 5.87879 5.89199 5.97453 6.15716 6.30328 6.33395 6.35893 6.37202 6.42084 6.44144 6.53650 6.59983 6.85518 7.44815 7.51410 7.62628 7.81886 7.97761 8.20314 8.23720 9.19060 9.79240 10.44432 11.38687 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.002578 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.522498 B =10857.209301 C =11336.212719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.182 3.818 11 C -0.128 4.128 12 C 0.103 3.897 13 O -0.536 6.536 14 C 0.105 3.895 15 N -0.722 5.722 16 C 0.553 3.447 17 O -0.534 6.534 18 C -0.154 4.154 19 C -0.038 4.038 20 C -0.080 4.080 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.142 4.142 27 C -0.157 4.157 28 C 0.117 3.883 29 H 0.253 0.747 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.363 0.637 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.026 0.974 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 -21.722 -5.259 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.061 3.939 13 O -0.340 6.340 14 C -0.019 4.019 15 N -0.374 5.374 16 C 0.339 3.661 17 O -0.410 6.410 18 C -0.157 4.157 19 C -0.076 4.076 20 C -0.080 4.080 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.179 4.179 27 C -0.194 4.194 28 C -0.010 4.010 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.119 0.881 49 H 0.043 0.957 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.932 -21.791 -4.792 23.680 hybrid contribution 1.213 0.982 -0.280 1.586 sum 9.145 -20.810 -5.072 23.289 Atomic orbital electron populations 1.69950 1.04893 1.25219 1.56620 1.24808 0.95721 0.97686 1.02069 0.86191 0.78452 0.83189 0.77851 1.21165 1.21564 1.21180 1.18966 0.90294 0.82350 1.44347 0.90588 1.44335 1.01630 0.99418 1.87023 1.21138 0.84229 0.87666 1.01235 1.22909 0.94907 0.99657 0.99223 1.22690 0.99194 0.90781 0.81280 1.86631 1.39417 1.89670 1.18292 1.22036 0.84088 0.95264 1.00532 1.45935 1.17797 1.11419 1.62237 1.19381 0.87729 0.81629 0.77399 1.90696 1.51963 1.53911 1.44443 1.21400 0.92810 1.07545 0.93957 1.20092 0.99004 0.98595 0.89894 1.19723 0.95948 0.94474 0.97845 1.20956 0.99929 0.92637 0.99333 1.21100 0.95292 0.99335 0.98184 1.21134 0.97087 0.95999 0.99977 1.21149 0.99527 0.93426 0.99298 1.21076 0.94371 0.99853 0.97412 1.22983 1.02004 0.91568 1.01384 1.23164 0.97297 0.99062 0.99909 1.22125 0.94117 0.87458 0.97271 0.93631 0.93131 0.93795 0.90945 0.90969 0.79117 0.90748 0.90634 0.76635 0.90081 0.89727 0.86352 0.86281 0.86321 0.86103 0.86176 0.87897 0.88044 0.87626 0.88086 0.95650 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.97 3.39 -170.08 -0.58 -15.55 16 10 C 0.18 4.43 5.37 -3.07 -0.02 4.41 16 11 C -0.13 -2.40 6.16 -24.90 -0.15 -2.56 16 12 C 0.10 1.72 0.95 -88.48 -0.08 1.63 16 13 O -0.54 -9.08 13.18 -35.23 -0.46 -9.55 16 14 C 0.10 1.50 4.94 -4.04 -0.02 1.48 16 15 N -0.72 -8.72 5.18 -60.30 -0.31 -9.03 16 16 C 0.55 7.20 6.63 -10.99 -0.07 7.13 16 17 O -0.53 -9.11 16.70 5.56 0.09 -9.01 16 18 C -0.15 -1.48 1.89 -155.66 -0.29 -1.78 16 19 C -0.04 -0.31 5.22 -27.88 -0.15 -0.46 16 20 C -0.08 -0.80 4.84 -104.62 -0.51 -1.30 16 21 C -0.11 -1.03 9.72 -39.58 -0.38 -1.41 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.11 -1.18 9.56 -39.58 -0.38 -1.56 16 26 C -0.14 -1.25 9.78 -26.69 -0.26 -1.51 16 27 C -0.16 -1.25 9.93 -26.69 -0.26 -1.52 16 28 C 0.12 2.26 5.82 -2.54 -0.01 2.25 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 31 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 34 H 0.36 4.67 8.44 45.56 0.38 5.06 16 35 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 37 H 0.40 4.11 7.33 -40.82 -0.30 3.81 16 38 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 39 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 40 H 0.12 0.86 7.87 -52.48 -0.41 0.45 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.10 1.07 8.01 -51.93 -0.42 0.65 16 46 H 0.10 0.70 7.96 -51.92 -0.41 0.28 16 47 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 50 H 0.04 0.67 7.85 -51.92 -0.41 0.26 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -34.28 409.84 -10.93 -45.21 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.35 Total: 7.98 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -4.04 Total: -6.69 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.32 Total: -51.03 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.37 Total: -18.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.28 -10.93 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733485515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds