Wall clock time and date at job start Wed Apr 1 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48495 * 109.46916 * 239.99871 * 3 2 1 5 5 H 1.48498 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47161 * 119.99399 * 3 2 1 7 7 C 1.38817 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65083 * 359.95386 * 9 7 2 11 11 C 1.54323 * 107.27216 * 178.98027 * 10 9 7 12 12 C 1.55158 * 102.94185 * 337.80502 * 11 10 9 13 13 O 1.42896 * 111.00460 * 277.42994 * 12 11 10 14 14 C 1.53001 * 111.00484 * 153.57854 * 12 11 10 15 15 N 1.46493 * 109.47109 * 188.11574 * 14 12 11 16 16 C 1.34775 * 120.00013 * 184.40130 * 15 14 12 17 17 O 1.21279 * 120.00301 * 4.68429 * 16 15 14 18 18 C 1.50701 * 120.00125 * 184.68436 * 16 15 14 19 19 C 1.52999 * 115.54995 * 293.81515 * 18 16 15 20 20 C 1.50707 * 109.47244 * 295.16443 * 19 18 16 21 21 C 1.38228 * 120.00026 * 275.41098 * 20 19 18 22 22 C 1.38238 * 120.00052 * 179.76513 * 21 20 19 23 23 C 1.38232 * 119.99488 * 0.49963 * 22 21 20 24 24 C 1.38232 * 120.00327 * 359.75244 * 23 22 21 25 25 C 1.38232 * 119.99650 * 95.67576 * 20 19 18 26 26 C 1.52999 * 117.49828 * 148.14286 * 18 16 15 27 27 C 1.52999 * 117.49816 * 79.48121 * 18 16 15 28 28 C 1.47427 * 125.64760 * 179.97438 * 9 7 2 29 29 H 0.96996 * 119.99656 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.88395 * 59.56043 * 10 9 7 31 31 H 1.09003 * 109.87954 * 298.39516 * 10 9 7 32 32 H 1.08999 * 110.71743 * 219.44684 * 11 10 9 33 33 H 1.08993 * 110.72434 * 96.17069 * 11 10 9 34 34 H 0.96701 * 113.99991 * 173.64776 * 13 12 11 35 35 H 1.09005 * 109.46909 * 308.11375 * 14 12 11 36 36 H 1.08995 * 109.46994 * 68.11443 * 14 12 11 37 37 H 0.97003 * 120.00128 * 4.39508 * 15 14 12 38 38 H 1.08996 * 109.47398 * 55.16492 * 19 18 16 39 39 H 1.08999 * 109.47327 * 175.16799 * 19 18 16 40 40 H 1.08007 * 119.99968 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00105 * 180.22899 * 22 21 20 42 42 H 1.08001 * 119.99827 * 179.72175 * 23 22 21 43 43 H 1.07999 * 120.00240 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00069 * 0.02562 * 25 20 19 45 45 H 1.08994 * 117.50034 * 359.97438 * 26 18 16 46 46 H 1.09011 * 117.49720 * 145.02139 * 26 18 16 47 47 H 1.09005 * 117.49913 * 214.97360 * 27 18 16 48 48 H 1.08998 * 117.50204 * 359.97438 * 27 18 16 49 49 H 1.08999 * 110.37020 * 85.24752 * 28 9 7 50 50 H 1.09009 * 110.36490 * 322.92805 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0010 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8517 -4.6563 -0.6104 13 8 0.8578 -4.5781 -2.0372 14 6 1.0369 -6.1009 -0.1418 15 7 2.3594 -6.5810 -0.5499 16 6 2.7111 -7.8619 -0.3222 17 8 1.9043 -8.6389 0.1427 18 6 4.1071 -8.3288 -0.6451 19 6 4.4752 -8.3311 -2.1302 20 6 3.6170 -9.3329 -2.8589 21 6 3.9866 -10.6644 -2.8930 22 6 3.1969 -11.5842 -3.5574 23 6 2.0430 -11.1706 -4.1963 24 6 1.6761 -9.8381 -4.1666 25 6 2.4631 -8.9193 -3.4979 26 6 4.7042 -9.4308 0.2324 27 6 5.2138 -7.9927 0.3564 28 6 1.9334 -3.7312 0.0005 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5579 -2.0523 -0.8826 31 1 -0.5541 -2.0843 0.9029 32 1 -1.2987 -4.2516 -0.6753 33 1 -0.6315 -4.4179 0.9819 34 1 1.6896 -4.8586 -2.4429 35 1 0.9539 -6.1440 0.9443 36 1 0.2678 -6.7297 -0.5902 37 1 2.9819 -5.9769 -0.9842 38 1 4.3082 -7.3381 -2.5474 39 1 5.5250 -8.6012 -2.2439 40 1 4.8907 -10.9868 -2.3977 41 1 3.4837 -12.6251 -3.5809 42 1 1.4283 -11.8884 -4.7192 43 1 0.7748 -9.5149 -4.6662 44 1 2.1768 -7.8782 -3.4752 45 1 4.0875 -9.8178 1.0435 46 1 5.3595 -10.1573 -0.2483 47 1 6.2043 -7.7737 -0.0426 48 1 4.9324 -7.4336 1.2487 49 1 2.1670 -4.0420 1.0188 50 1 2.8327 -3.7406 -0.6155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733485515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:22 Heat of formation + Delta-G solvation = -32.886430 kcal Electronic energy + Delta-G solvation = -30657.462197 eV Core-core repulsion = 26649.926744 eV Total energy + Delta-G solvation = -4007.535453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48968 -40.30968 -39.70095 -37.70207 -36.73117 -35.31834 -33.99424 -33.19408 -31.73068 -31.42969 -29.88976 -28.21911 -27.46280 -25.72514 -23.89118 -23.54966 -23.17636 -22.39525 -22.03937 -21.40666 -20.56431 -18.86691 -18.42529 -17.67403 -17.25460 -16.96366 -16.72494 -16.66998 -16.03092 -16.00957 -15.88351 -15.68517 -15.38463 -15.17231 -14.79426 -14.31916 -14.23726 -14.10572 -13.89410 -13.84145 -13.56931 -13.26173 -13.14369 -13.12072 -12.92976 -12.72951 -12.40256 -12.36214 -12.22650 -12.11162 -12.04916 -11.86168 -11.79462 -11.74150 -11.45000 -11.04606 -10.88885 -10.71412 -10.67490 -10.16496 -9.76954 -9.55657 -8.88858 -7.84003 -5.19661 0.48461 0.55005 1.46430 1.49931 1.56076 1.58038 2.05842 2.49838 2.71871 2.95605 3.16516 3.34451 3.46300 3.60192 3.66452 3.77903 3.86062 3.91798 3.96654 3.97425 4.06667 4.18628 4.24034 4.33061 4.46090 4.55984 4.58253 4.64085 4.67306 4.78820 4.79894 4.81675 4.88023 4.91490 4.95426 4.98120 5.02086 5.07791 5.20857 5.22861 5.24793 5.33413 5.44697 5.61086 5.63023 5.66637 5.73858 5.75815 6.17806 6.19014 6.47674 6.80106 7.09456 7.20918 7.77137 8.41300 9.26627 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.002578 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.522498 B =10857.209301 C =11336.212719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.087 0.913 9 N -0.620 5.620 10 C 0.191 3.809 11 C -0.122 4.122 12 C 0.124 3.876 13 O -0.552 6.552 14 C 0.121 3.879 15 N -0.712 5.712 16 C 0.552 3.448 17 O -0.579 6.579 18 C -0.161 4.161 19 C -0.034 4.034 20 C -0.089 4.089 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.145 4.145 27 C -0.140 4.140 28 C 0.114 3.886 29 H 0.246 0.754 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.382 0.618 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.035 0.965 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.231 -23.242 -5.597 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.105 0.895 9 N -0.346 5.346 10 C 0.066 3.934 11 C -0.161 4.161 12 C 0.082 3.918 13 O -0.359 6.359 14 C -0.004 4.004 15 N -0.364 5.364 16 C 0.340 3.660 17 O -0.458 6.458 18 C -0.164 4.164 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.183 4.183 27 C -0.177 4.177 28 C -0.011 4.011 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.143 0.857 47 H 0.152 0.848 48 H 0.110 0.890 49 H 0.052 0.948 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.002 -23.335 -5.148 26.307 hybrid contribution 0.277 1.387 -0.179 1.426 sum 11.279 -21.948 -5.327 25.245 Atomic orbital electron populations 1.70194 1.06458 1.25288 1.58279 1.25694 0.96576 1.01217 1.02709 0.85136 0.77080 0.78694 0.78322 1.20121 1.22440 1.20113 1.19437 0.91080 0.83526 1.42916 0.89488 1.44621 1.02096 1.01002 1.86906 1.20811 0.84170 0.90908 0.97515 1.22799 0.96424 0.95826 1.01044 1.22363 0.96753 0.91523 0.81207 1.86600 1.41077 1.89954 1.18258 1.21696 0.85285 0.93181 1.00258 1.45810 1.17055 1.11621 1.61960 1.19996 0.88809 0.81080 0.76144 1.90678 1.53626 1.55009 1.46525 1.21346 0.91073 1.08704 0.95295 1.20159 1.00043 0.98627 0.88306 1.19988 0.95844 0.95365 0.97732 1.21299 1.00716 0.92431 0.99159 1.21459 0.95011 1.00588 0.97647 1.21414 0.97716 0.95999 1.00268 1.21368 1.00019 0.94141 0.99900 1.21236 0.95311 0.99916 0.98449 1.23056 1.02006 0.92496 1.00697 1.23270 0.97736 0.97982 0.98719 1.22334 0.95326 0.85232 0.98221 0.94514 0.97447 0.97314 0.90183 0.88883 0.76919 0.90854 0.91146 0.75308 0.89334 0.87076 0.84114 0.84161 0.84781 0.85758 0.86482 0.90095 0.85653 0.84755 0.89010 0.94777 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 10.31 21.65 0.22 -57.88 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.48 29.55 68.60 2.03 47.50 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.24 10.28 84.03 0.86 -12.37 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -31.17 3.39 -692.01 -2.35 -33.52 16 10 C 0.19 9.62 5.37 86.73 0.47 10.08 16 11 C -0.12 -4.56 6.16 31.78 0.20 -4.37 16 12 C 0.12 3.97 0.95 -9.41 -0.01 3.96 16 13 O -0.55 -17.95 13.18 -148.98 -1.96 -19.92 16 14 C 0.12 3.26 4.94 86.38 0.43 3.69 16 15 N -0.71 -15.82 5.18 -463.07 -2.40 -18.22 16 16 C 0.55 13.54 6.63 87.66 0.58 14.12 16 17 O -0.58 -19.45 16.70 -3.03 -0.05 -19.50 16 18 C -0.16 -2.68 1.89 -52.93 -0.10 -2.78 16 19 C -0.03 -0.45 5.22 29.85 0.16 -0.29 16 20 C -0.09 -1.60 4.84 -19.87 -0.10 -1.70 16 21 C -0.12 -1.92 9.72 22.27 0.22 -1.70 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.14 -2.47 10.05 22.27 0.22 -2.25 16 24 C -0.14 -2.81 10.05 22.27 0.22 -2.58 16 25 C -0.13 -2.74 9.56 22.27 0.21 -2.53 16 26 C -0.15 -2.18 9.78 30.62 0.30 -1.88 16 27 C -0.14 -1.75 9.93 30.62 0.30 -1.45 16 28 C 0.11 4.23 5.82 86.85 0.51 4.74 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.01 0.42 7.38 -2.38 -0.02 0.40 16 31 H 0.01 0.49 7.51 -2.39 -0.02 0.47 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.09 3.07 7.99 -2.39 -0.02 3.05 16 34 H 0.38 9.03 8.44 -74.06 -0.63 8.40 16 35 H 0.07 2.05 8.08 -2.38 -0.02 2.03 16 36 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 37 H 0.41 7.32 7.33 -92.71 -0.68 6.64 16 38 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 39 H 0.11 0.89 8.07 -2.39 -0.02 0.88 16 40 H 0.14 1.54 7.87 -2.91 -0.02 1.52 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.08 1.59 8.01 -2.39 -0.02 1.58 16 46 H 0.13 1.24 7.96 -2.38 -0.02 1.23 16 47 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.03 1.24 8.03 -2.39 -0.02 1.23 16 50 H 0.06 1.89 7.85 -2.38 -0.02 1.88 16 Total: -1.00 -77.14 409.84 0.29 -76.85 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.36 Total: 27.36 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.16 Total: -2.68 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.52 Total: -109.61 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.01 Total: -39.42 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.14 0.29 -76.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733485515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.961 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds