Wall clock time and date at job start Wed Apr 1 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46988 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46935 * 179.97438 * 19 18 16 21 21 C 1.32565 * 119.99783 * 124.99905 * 20 19 18 22 22 C 1.47812 * 119.99976 * 179.97438 * 21 20 19 23 23 C 1.39538 * 120.13851 * 359.72745 * 22 21 20 24 24 C 1.37970 * 119.85757 * 179.72179 * 23 22 21 25 25 C 1.38349 * 120.14055 * 0.52715 * 24 23 22 26 26 C 1.38350 * 120.28252 * 359.76895 * 25 24 23 27 27 C 1.37964 * 120.14301 * 359.95236 * 26 25 24 28 28 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 29 29 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 31 31 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 32 32 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 33 33 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 34 34 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 35 35 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 36 36 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 37 37 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 38 38 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 39 39 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 40 40 H 1.09006 * 109.46841 * 299.99054 * 19 18 16 41 41 H 1.08995 * 109.47299 * 59.99296 * 19 18 16 42 42 H 1.07995 * 119.99695 * 304.99181 * 20 19 18 43 43 H 1.07994 * 120.00173 * 359.97438 * 21 20 19 44 44 H 1.08004 * 120.07334 * 359.96929 * 23 22 21 45 45 H 1.07998 * 119.93636 * 180.27185 * 24 23 22 46 46 H 1.07997 * 119.86215 * 179.74408 * 25 24 23 47 47 H 1.07999 * 119.92533 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.07149 * 180.02562 * 27 26 25 49 49 H 1.09006 * 109.87818 * 300.49317 * 28 9 7 50 50 H 1.08994 * 109.88526 * 61.50338 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 6 -6.4208 -3.5318 1.1159 20 6 -7.6402 -2.7745 0.6569 21 6 -8.7396 -3.4323 0.3162 22 6 -9.9358 -2.6895 -0.1335 23 6 -9.9129 -1.2957 -0.1950 24 6 -11.0309 -0.6085 -0.6210 25 6 -12.1765 -1.2979 -0.9764 26 6 -12.2077 -2.6795 -0.9118 27 6 -11.0946 -3.3787 -0.4929 28 6 -0.1293 -2.5349 -0.1726 29 1 -0.4850 0.8401 -0.0004 30 1 2.1943 -3.9095 -1.3278 31 1 2.8420 -3.7892 0.3369 32 1 1.0083 -5.6933 -0.2358 33 1 0.8599 -4.7704 1.2974 34 1 -1.4156 -3.9295 -2.0842 35 1 -1.8112 -5.5091 0.4452 36 1 -1.4265 -4.1981 1.5861 37 1 -2.7510 -3.0782 -0.6430 38 1 -5.0409 -2.0641 0.3520 39 1 -5.4257 -3.3758 -0.7881 40 1 -6.5997 -4.6027 1.0183 41 1 -6.2154 -3.2913 2.1589 42 1 -7.6184 -1.6960 0.6057 43 1 -8.7613 -4.5108 0.3671 44 1 -9.0207 -0.7561 0.0865 45 1 -11.0131 0.4701 -0.6733 46 1 -13.0504 -0.7552 -1.3053 47 1 -13.1052 -3.2118 -1.1902 48 1 -11.1200 -4.4573 -0.4433 49 1 -0.5615 -2.1580 0.7544 50 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733491509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:06 Heat of formation + Delta-G solvation = -30.129825 kcal Electronic energy + Delta-G solvation = -28712.694290 eV Core-core repulsion = 24705.278372 eV Total energy + Delta-G solvation = -4007.415918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.82823 -39.44342 -38.41880 -35.79159 -35.07280 -33.96908 -32.56634 -32.23501 -31.24859 -29.84858 -29.00780 -27.88626 -25.97829 -24.71586 -23.45011 -22.99824 -21.90129 -20.65625 -19.92853 -19.77946 -19.57294 -17.50909 -17.38520 -16.77367 -16.31907 -15.90317 -15.52581 -15.49696 -15.14742 -14.58757 -14.40176 -14.16449 -13.98004 -13.77487 -13.70493 -13.56921 -13.26242 -12.95884 -12.94848 -12.65444 -12.40677 -12.26533 -12.03509 -11.79731 -11.62151 -11.40781 -11.22776 -11.15445 -11.03983 -10.87424 -10.68233 -10.49001 -10.37035 -10.28434 -10.06760 -9.83504 -9.64939 -9.31369 -9.24877 -8.86924 -8.68102 -8.33602 -6.89738 -5.81041 -3.11708 0.65400 1.11510 2.25434 2.79303 3.34020 3.36234 3.41938 3.43247 3.65301 4.39131 4.43439 4.50879 4.56014 4.67067 4.73900 4.82566 4.87559 4.97191 5.04768 5.12177 5.16668 5.19918 5.31782 5.40981 5.45529 5.47290 5.52865 5.61108 5.66689 5.72717 5.78364 5.90132 5.95831 5.99066 6.09282 6.15448 6.16869 6.22038 6.28466 6.42045 6.42972 6.56656 6.58518 6.63738 6.70658 6.88428 7.26618 7.40084 7.63421 7.68361 8.05577 8.16103 8.36636 9.13700 9.74626 10.40887 11.31932 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.001906 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.573190 B =14690.194117 C =16409.430145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.136 3.864 11 C -0.115 4.115 12 C 0.085 3.915 13 O -0.551 6.551 14 C 0.110 3.890 15 N -0.722 5.722 16 C 0.514 3.486 17 O -0.549 6.549 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.049 4.049 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.114 4.114 28 C 0.163 3.837 29 H 0.252 0.748 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.368 0.632 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.052 0.948 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 -6.184 -2.032 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.010 3.990 11 C -0.154 4.154 12 C 0.044 3.956 13 O -0.356 6.356 14 C -0.015 4.015 15 N -0.374 5.374 16 C 0.300 3.700 17 O -0.427 6.427 18 C -0.178 4.178 19 C -0.114 4.114 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.049 4.049 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.132 4.132 28 C 0.038 3.962 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.214 0.786 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.070 0.930 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.413 -6.900 -1.237 21.583 hybrid contribution -0.049 1.697 -0.500 1.770 sum -20.462 -5.202 -1.737 21.185 Atomic orbital electron populations 1.69916 1.04922 1.25033 1.57299 1.24802 0.95787 0.97701 1.02216 0.86085 0.78717 0.83426 0.77488 1.21624 1.21793 1.20621 1.19108 0.91217 0.82468 1.42601 0.90255 1.44375 1.01120 1.01476 1.86067 1.21563 0.94353 0.85499 0.97607 1.22704 0.93715 0.98701 1.00239 1.22916 0.93105 0.98676 0.80938 1.86509 1.53401 1.70603 1.25086 1.21934 0.84151 0.96056 0.99319 1.45958 1.08888 1.45403 1.37106 1.20617 0.84498 0.82446 0.82420 1.90680 1.85642 1.37273 1.29128 1.21623 0.92667 1.01838 1.01632 1.20441 0.90891 1.00104 0.99934 1.23457 0.94300 1.00064 0.97118 1.21683 0.92366 0.99186 1.01654 1.19127 0.93968 0.93135 0.98718 1.21369 0.98725 0.93595 0.99883 1.21114 0.93273 0.99999 0.99167 1.21211 0.98226 0.94478 1.00518 1.21095 0.98346 0.94411 0.99932 1.21279 0.92645 0.99841 0.99386 1.21782 0.85813 0.87218 1.01401 0.93811 0.95676 0.94072 0.90930 0.90235 0.78561 0.91391 0.90619 0.76291 0.88351 0.88786 0.90600 0.89765 0.86665 0.86282 0.85651 0.85971 0.86211 0.86078 0.85911 0.92996 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.83 10.36 55.49 0.57 -25.26 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.19 10.26 -15.06 -0.15 -6.34 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.08 3.39 -170.08 -0.58 -15.66 16 10 C 0.14 2.82 7.23 -2.53 -0.02 2.80 16 11 C -0.11 -2.00 6.26 -24.59 -0.15 -2.16 16 12 C 0.09 1.51 0.92 -88.79 -0.08 1.43 16 13 O -0.55 -9.33 13.10 -35.23 -0.46 -9.80 16 14 C 0.11 1.75 4.73 -4.04 -0.02 1.73 16 15 N -0.72 -10.20 5.17 -60.29 -0.31 -10.52 16 16 C 0.51 7.30 7.83 -10.98 -0.09 7.21 16 17 O -0.55 -9.71 15.98 5.56 0.09 -9.62 16 18 C -0.14 -1.41 5.68 -27.88 -0.16 -1.57 16 19 C -0.08 -0.77 4.95 -27.88 -0.14 -0.91 16 20 C -0.13 -1.17 8.94 -36.21 -0.32 -1.49 16 21 C -0.13 -1.17 9.52 -37.57 -0.36 -1.52 16 22 C -0.05 -0.46 5.87 -105.01 -0.62 -1.07 16 23 C -0.12 -1.04 9.40 -39.20 -0.37 -1.41 16 24 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 25 C -0.13 -0.95 10.04 -39.50 -0.40 -1.35 16 26 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 27 C -0.11 -0.95 9.79 -39.20 -0.38 -1.33 16 28 C 0.16 3.67 4.16 -3.07 -0.01 3.65 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 34 H 0.37 5.00 8.12 45.56 0.37 5.37 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 37 H 0.40 5.12 7.38 -40.82 -0.30 4.82 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.80 7.77 -51.93 -0.40 0.40 16 41 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.12 0.92 6.04 -52.49 -0.32 0.61 16 43 H 0.12 0.96 7.87 -52.49 -0.41 0.55 16 44 H 0.13 0.96 6.17 -52.48 -0.32 0.64 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.05 1.30 7.23 -51.93 -0.38 0.93 16 50 H 0.05 1.20 7.28 -51.93 -0.38 0.82 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -33.07 409.35 -10.88 -43.95 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.18 Total: 9.38 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -4.16 Total: -5.33 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.31 Total: -51.43 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.37 Total: -19.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.07 -10.88 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733491509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.821 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds