Wall clock time and date at job start Wed Apr 1 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46988 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46935 * 179.97438 * 19 18 16 21 21 C 1.32565 * 119.99783 * 124.99905 * 20 19 18 22 22 C 1.47812 * 119.99976 * 179.97438 * 21 20 19 23 23 C 1.39538 * 120.13851 * 359.72745 * 22 21 20 24 24 C 1.37970 * 119.85757 * 179.72179 * 23 22 21 25 25 C 1.38349 * 120.14055 * 0.52715 * 24 23 22 26 26 C 1.38350 * 120.28252 * 359.76895 * 25 24 23 27 27 C 1.37964 * 120.14301 * 359.95236 * 26 25 24 28 28 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 29 29 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 31 31 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 32 32 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 33 33 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 34 34 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 35 35 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 36 36 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 37 37 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 38 38 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 39 39 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 40 40 H 1.09006 * 109.46841 * 299.99054 * 19 18 16 41 41 H 1.08995 * 109.47299 * 59.99296 * 19 18 16 42 42 H 1.07995 * 119.99695 * 304.99181 * 20 19 18 43 43 H 1.07994 * 120.00173 * 359.97438 * 21 20 19 44 44 H 1.08004 * 120.07334 * 359.96929 * 23 22 21 45 45 H 1.07998 * 119.93636 * 180.27185 * 24 23 22 46 46 H 1.07997 * 119.86215 * 179.74408 * 25 24 23 47 47 H 1.07999 * 119.92533 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.07149 * 180.02562 * 27 26 25 49 49 H 1.09006 * 109.87818 * 300.49317 * 28 9 7 50 50 H 1.08994 * 109.88526 * 61.50338 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 6 -6.4208 -3.5318 1.1159 20 6 -7.6402 -2.7745 0.6569 21 6 -8.7396 -3.4323 0.3162 22 6 -9.9358 -2.6895 -0.1335 23 6 -9.9129 -1.2957 -0.1950 24 6 -11.0309 -0.6085 -0.6210 25 6 -12.1765 -1.2979 -0.9764 26 6 -12.2077 -2.6795 -0.9118 27 6 -11.0946 -3.3787 -0.4929 28 6 -0.1293 -2.5349 -0.1726 29 1 -0.4850 0.8401 -0.0004 30 1 2.1943 -3.9095 -1.3278 31 1 2.8420 -3.7892 0.3369 32 1 1.0083 -5.6933 -0.2358 33 1 0.8599 -4.7704 1.2974 34 1 -1.4156 -3.9295 -2.0842 35 1 -1.8112 -5.5091 0.4452 36 1 -1.4265 -4.1981 1.5861 37 1 -2.7510 -3.0782 -0.6430 38 1 -5.0409 -2.0641 0.3520 39 1 -5.4257 -3.3758 -0.7881 40 1 -6.5997 -4.6027 1.0183 41 1 -6.2154 -3.2913 2.1589 42 1 -7.6184 -1.6960 0.6057 43 1 -8.7613 -4.5108 0.3671 44 1 -9.0207 -0.7561 0.0865 45 1 -11.0131 0.4701 -0.6733 46 1 -13.0504 -0.7552 -1.3053 47 1 -13.1052 -3.2118 -1.1902 48 1 -11.1200 -4.4573 -0.4433 49 1 -0.5615 -2.1580 0.7544 50 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733491509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:05 Heat of formation + Delta-G solvation = -50.843851 kcal Electronic energy + Delta-G solvation = -28713.592518 eV Core-core repulsion = 24705.278372 eV Total energy + Delta-G solvation = -4008.314145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.07295 -40.07502 -39.83296 -36.79574 -36.46332 -35.24483 -34.13103 -33.30972 -31.82656 -31.32543 -30.11139 -29.31266 -27.60000 -25.94654 -24.72838 -23.68192 -22.68113 -22.17341 -21.35170 -21.12594 -20.25626 -19.06854 -18.38607 -17.99392 -17.67127 -16.93917 -16.79033 -16.33375 -16.21742 -15.92360 -15.68445 -15.62307 -15.18927 -14.89179 -14.82926 -14.38579 -14.31660 -14.15386 -13.95998 -13.86124 -13.67011 -13.40761 -13.31064 -13.15192 -12.99962 -12.71728 -12.50341 -12.39110 -12.12447 -12.10370 -11.94530 -11.84524 -11.78574 -11.69360 -11.68575 -11.05995 -10.90165 -10.80444 -10.71865 -10.11072 -9.84038 -8.98668 -8.88894 -7.87675 -5.20313 0.02300 0.52293 1.46551 1.47602 1.56081 1.59590 1.65932 2.22337 2.48676 3.03938 3.18796 3.31123 3.45876 3.64636 3.85328 3.89228 3.92056 3.93762 3.97647 4.12202 4.17628 4.22333 4.29134 4.40943 4.48494 4.52590 4.55523 4.60478 4.66899 4.76429 4.78095 4.81695 4.95462 4.96848 5.01391 5.08671 5.17474 5.19709 5.31996 5.37036 5.41229 5.43749 5.51126 5.56292 5.63982 5.67167 5.75749 5.92622 6.13134 6.18004 6.50133 6.77156 7.09777 7.22949 7.75568 8.40833 9.23051 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.001906 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.573190 B =14690.194117 C =16409.430145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.627 5.627 10 C 0.129 3.871 11 C -0.108 4.108 12 C 0.104 3.896 13 O -0.554 6.554 14 C 0.120 3.880 15 N -0.719 5.719 16 C 0.511 3.489 17 O -0.586 6.586 18 C -0.129 4.129 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.070 4.070 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.125 4.125 28 C 0.176 3.824 29 H 0.248 0.752 30 H 0.022 0.978 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.383 0.617 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.135 0.865 49 H 0.019 0.981 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.752 -6.461 -2.856 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.004 3.996 11 C -0.146 4.146 12 C 0.062 3.938 13 O -0.361 6.361 14 C -0.005 4.005 15 N -0.371 5.371 16 C 0.299 3.701 17 O -0.467 6.467 18 C -0.169 4.169 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.070 4.070 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.143 4.143 28 C 0.051 3.949 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.153 0.847 49 H 0.037 0.963 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -21.293 -7.187 -2.086 22.570 hybrid contribution 0.203 1.777 -0.278 1.810 sum -21.091 -5.411 -2.364 21.902 Atomic orbital electron populations 1.70099 1.05901 1.25274 1.57881 1.25581 0.96762 1.00652 1.02504 0.85110 0.77850 0.79468 0.77202 1.21491 1.22085 1.19639 1.19442 0.91645 0.83867 1.42454 0.90236 1.44708 1.02376 1.02383 1.85924 1.21728 0.95657 0.84540 0.97676 1.22707 0.91938 0.98945 1.01007 1.22585 0.94144 0.95235 0.81837 1.86481 1.54497 1.70573 1.24532 1.21705 0.84114 0.96709 0.97944 1.45951 1.08539 1.45318 1.37281 1.21292 0.85212 0.81955 0.81612 1.90662 1.86212 1.39035 1.30758 1.21648 0.90666 1.01743 1.02823 1.20339 0.91390 0.99898 0.99137 1.23361 0.93776 1.00333 0.97735 1.21791 0.92321 0.99545 1.01042 1.19293 0.94442 0.93546 0.99708 1.21573 0.99437 0.93735 1.00288 1.21398 0.93262 1.00992 0.99000 1.21550 0.98791 0.94770 0.99857 1.21415 0.98888 0.94736 0.99437 1.21538 0.92712 1.00689 0.99321 1.21537 0.84525 0.90268 0.98585 0.94278 0.95980 0.93367 0.88198 0.89298 0.76833 0.90322 0.92272 0.75432 0.87238 0.86353 0.91230 0.91254 0.85870 0.85770 0.85092 0.84442 0.84164 0.84023 0.84725 0.96256 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.64 10.36 21.65 0.22 -53.41 16 2 C -0.06 -3.40 5.48 84.86 0.47 -2.94 16 3 Si 0.97 44.87 29.56 68.60 2.03 46.89 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -13.56 10.26 84.03 0.86 -12.69 16 8 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 9 N -0.63 -31.56 3.39 -692.01 -2.35 -33.91 16 10 C 0.13 5.25 7.23 86.85 0.63 5.88 16 11 C -0.11 -3.57 6.26 31.98 0.20 -3.37 16 12 C 0.10 3.58 0.92 -9.61 -0.01 3.57 16 13 O -0.55 -17.81 13.10 -148.98 -1.95 -19.76 16 14 C 0.12 3.75 4.73 86.38 0.41 4.16 16 15 N -0.72 -19.91 5.17 -463.06 -2.40 -22.30 16 16 C 0.51 14.27 7.83 87.66 0.69 14.96 16 17 O -0.59 -20.75 15.98 -3.01 -0.05 -20.79 16 18 C -0.13 -2.52 5.68 29.85 0.17 -2.35 16 19 C -0.07 -1.39 4.95 29.85 0.15 -1.24 16 20 C -0.13 -2.28 8.94 24.54 0.22 -2.07 16 21 C -0.13 -2.21 9.52 23.65 0.23 -1.99 16 22 C -0.07 -1.24 5.87 -20.12 -0.12 -1.36 16 23 C -0.13 -2.25 9.40 22.52 0.21 -2.03 16 24 C -0.13 -1.91 10.03 22.23 0.22 -1.69 16 25 C -0.13 -1.78 10.04 22.32 0.22 -1.55 16 26 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 27 C -0.12 -1.96 9.79 22.52 0.22 -1.74 16 28 C 0.18 8.02 4.16 86.73 0.36 8.38 16 29 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 34 H 0.38 9.79 8.12 -74.06 -0.60 9.19 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.41 10.16 7.38 -92.71 -0.68 9.48 16 38 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.45 7.77 -2.38 -0.02 1.44 16 41 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 42 H 0.12 1.88 6.04 -2.91 -0.02 1.86 16 43 H 0.12 1.92 7.87 -2.91 -0.02 1.90 16 44 H 0.13 1.93 6.17 -2.91 -0.02 1.91 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 46 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 47 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 48 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.02 1.00 7.23 -2.38 -0.02 0.98 16 50 H 0.02 1.17 7.28 -2.39 -0.02 1.15 16 Total: -1.00 -71.41 409.35 0.52 -70.89 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.34 Total: 31.97 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 5.35 Total: 0.42 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.52 Total: -109.62 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.00 Total: -40.55 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.41 0.52 -70.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733491509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.051 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds