Wall clock time and date at job start Wed Apr 1 2020 03:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48493 * 109.47365 * 270.00415 * 3 2 1 5 5 H 1.48505 * 109.46959 * 30.00119 * 3 2 1 6 6 H 1.48496 * 109.46916 * 149.99968 * 3 2 1 7 7 C 1.38808 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.47168 * 125.25317 * 359.14165 * 9 7 2 11 11 C 1.53698 * 107.73381 * 180.39763 * 10 9 7 12 12 H 1.09001 * 113.05661 * 254.94677 * 11 10 9 13 13 C 1.53723 * 109.34082 * 128.69302 * 11 10 9 14 14 N 1.46669 * 107.94089 * 266.25259 * 13 11 10 15 15 C 1.34777 * 125.33484 * 180.54906 * 14 13 11 16 16 O 1.21277 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00049 * 180.02562 * 15 14 13 18 18 O 1.42894 * 109.47529 * 180.02562 * 17 15 14 19 19 C 1.42895 * 114.00459 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47391 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47116 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00109 * 269.72529 * 21 20 19 23 23 C 1.38238 * 119.99754 * 179.76611 * 22 21 20 24 24 C 1.38234 * 120.00038 * 0.48818 * 23 22 21 25 25 C 1.38238 * 120.00047 * 359.78460 * 24 23 22 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 24 23 27 27 C 1.46775 * 109.32424 * 0.81214 * 14 13 11 28 28 C 1.54160 * 106.52666 * 341.08729 * 27 14 13 29 29 H 1.09004 * 113.23720 * 266.01847 * 28 27 14 30 30 C 1.46740 * 125.32941 * 180.02562 * 9 7 2 31 31 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 32 32 H 1.08995 * 108.95483 * 61.37735 * 10 9 7 33 33 H 1.08997 * 110.84222 * 300.49472 * 10 9 7 34 34 H 1.08999 * 109.77099 * 146.63720 * 13 11 10 35 35 H 1.08994 * 109.77356 * 25.87347 * 13 11 10 36 36 H 1.08999 * 109.47204 * 59.99091 * 17 15 14 37 37 H 1.09005 * 109.46977 * 299.99702 * 17 15 14 38 38 H 1.09000 * 109.47558 * 59.99233 * 19 18 17 39 39 H 1.09008 * 109.47043 * 299.99918 * 19 18 17 40 40 H 1.09000 * 109.46884 * 60.00145 * 20 19 18 41 41 H 1.09000 * 109.46955 * 299.99461 * 20 19 18 42 42 H 1.08004 * 119.99934 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.99931 * 180.25459 * 23 22 21 44 44 H 1.08001 * 120.00294 * 179.76932 * 24 23 22 45 45 H 1.08000 * 120.00559 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00165 * 179.97438 * 26 25 24 47 47 H 1.08993 * 110.02668 * 100.51188 * 27 14 13 48 48 H 1.09001 * 110.02610 * 221.92674 * 27 14 13 49 49 H 1.09002 * 110.00908 * 42.34245 * 30 9 7 50 50 H 1.09007 * 110.01279 * 280.98014 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1398 -2.5229 0.0180 11 6 -0.4718 -4.0236 0.0210 12 1 -0.8306 -4.3834 -0.9433 13 6 -1.4526 -4.3257 1.1655 14 7 -0.6693 -4.7381 2.3349 15 6 -1.1810 -5.0943 3.5297 16 8 -2.3816 -5.0890 3.7012 17 6 -0.2613 -5.4981 4.6532 18 8 -1.0359 -5.8291 5.8074 19 6 -0.2558 -6.2272 6.9365 20 6 -1.1840 -6.5555 8.1076 21 6 -0.3612 -6.9760 9.2981 22 6 -0.0447 -8.3088 9.4835 23 6 0.7142 -8.6939 10.5730 24 6 1.1479 -7.7474 11.4824 25 6 0.8266 -6.4154 11.3001 26 6 0.0722 -6.0296 10.2078 27 6 0.7596 -4.6959 2.0018 28 6 0.8517 -4.7082 0.4630 29 1 0.9785 -5.7080 0.0477 30 6 1.9381 -3.7215 -0.0005 31 1 -0.4851 0.8400 0.0004 32 1 -0.5496 -2.0567 -0.8779 33 1 -0.5615 -2.0505 0.9051 34 1 -2.1265 -5.1302 0.8708 35 1 -2.0279 -3.4312 1.4038 36 1 0.4085 -4.6713 4.8894 37 1 0.3251 -6.3651 4.3488 38 1 0.4135 -5.4151 7.2203 39 1 0.3314 -7.1090 6.6796 40 1 -1.8535 -7.3675 7.8240 41 1 -1.7708 -5.6735 8.3644 42 1 -0.3867 -9.0487 8.7750 43 1 0.9650 -9.7346 10.7156 44 1 1.7376 -8.0487 12.3356 45 1 1.1650 -5.6759 12.0108 46 1 -0.1792 -4.9889 10.0656 47 1 1.2085 -3.7852 2.3981 48 1 1.2644 -5.5705 2.4118 49 1 2.7818 -3.7444 0.6893 50 1 2.2711 -3.9790 -1.0060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733577831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:13 Heat of formation + Delta-G solvation = -24.971580 kcal Electronic energy + Delta-G solvation = -29228.168766 eV Core-core repulsion = 25220.976526 eV Total energy + Delta-G solvation = -4007.192239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.20715 -39.66866 -38.55588 -37.37073 -34.91883 -33.74464 -32.32642 -31.22397 -30.72568 -29.48702 -29.26302 -27.47210 -25.52932 -25.20987 -23.72203 -22.90914 -22.82320 -21.24160 -20.14747 -19.42040 -19.24157 -17.34542 -17.17442 -16.80755 -16.66492 -16.26362 -15.96327 -15.47674 -15.27935 -15.02987 -14.68506 -14.30913 -13.91783 -13.75830 -13.67903 -13.35763 -13.29526 -13.16455 -12.91476 -12.58119 -12.48200 -12.05599 -11.99129 -11.67937 -11.55563 -11.49548 -11.47254 -11.37990 -11.21401 -10.92180 -10.84139 -10.44071 -10.14006 -10.11685 -9.89691 -9.84129 -9.67104 -9.56970 -9.25646 -9.05978 -8.64205 -8.34590 -6.87898 -5.75818 -3.09990 0.98407 1.06339 2.75359 2.81402 3.37347 3.42180 3.42629 3.44643 3.83271 4.45876 4.49449 4.53031 4.60047 4.70433 4.79341 4.80819 4.81767 4.94342 5.03883 5.10016 5.13474 5.16533 5.18829 5.20393 5.25552 5.47082 5.54566 5.55105 5.58926 5.62534 5.65909 5.74738 5.81392 5.83200 5.94603 6.12584 6.14288 6.18040 6.25496 6.30669 6.34710 6.49127 6.53767 6.57944 6.66615 6.77302 6.92590 7.52371 7.54321 7.73066 7.78201 8.21816 8.35640 9.17273 9.78286 10.41672 11.35604 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.001975 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.505610 B =14172.780308 C =15202.606611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.123 3.877 14 N -0.607 5.607 15 C 0.527 3.473 16 O -0.528 6.528 17 C 0.051 3.949 18 O -0.364 6.364 19 C 0.067 3.933 20 C -0.080 4.080 21 C -0.081 4.081 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.114 4.114 27 C 0.109 3.891 28 C -0.110 4.110 29 H 0.090 0.910 30 C 0.147 3.853 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.037 0.963 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -17.577 16.650 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.110 0.890 13 C 0.000 4.000 14 N -0.343 5.343 15 C 0.315 3.685 16 O -0.404 6.404 17 C -0.028 4.028 18 O -0.282 6.282 19 C -0.010 4.010 20 C -0.117 4.117 21 C -0.081 4.081 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.014 4.014 28 C -0.130 4.130 29 H 0.108 0.892 30 C 0.020 3.980 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.504 -17.347 16.835 24.220 hybrid contribution 0.891 0.917 -0.010 1.279 sum 2.395 -16.430 16.825 23.638 Atomic orbital electron populations 1.69949 1.04871 1.25166 1.56748 1.24813 0.95725 0.97747 1.02071 0.86120 0.78545 0.83494 0.77580 1.21574 1.21686 1.20715 1.19021 0.90416 0.82310 1.44197 0.90380 1.44352 1.01469 0.99909 1.87296 1.21218 0.84439 0.86727 1.01611 1.23170 0.93743 1.00491 0.96889 0.89002 1.21827 0.93959 0.99814 0.84363 1.48184 1.08415 1.66285 1.11374 1.19740 0.88785 0.77965 0.82040 1.90708 1.15362 1.52949 1.81367 1.22157 0.93412 1.01004 0.86267 1.87968 1.32621 1.87674 1.19935 1.22494 0.93695 0.98906 0.85869 1.20462 0.97078 1.03245 0.90907 1.19760 0.98528 0.93599 0.96182 1.21117 0.98604 0.95524 0.98033 1.21162 0.98201 0.99575 0.94838 1.21181 1.00275 0.93363 0.99420 1.21179 0.98455 0.96221 0.97838 1.21148 0.98074 0.99487 0.94489 1.22168 0.81197 1.01697 0.96337 1.22930 0.97348 0.99205 0.93552 0.89215 1.21138 0.93608 0.85700 0.97560 0.93648 0.93474 0.93151 0.92218 0.90787 0.90113 0.90455 0.92893 0.93033 0.89867 0.89772 0.85906 0.86040 0.86153 0.85986 0.85807 0.90185 0.91705 0.94529 0.96091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.25 55.49 0.57 -25.97 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.19 10.25 -15.06 -0.15 -6.34 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.51 3.39 -171.52 -0.58 -15.09 16 10 C 0.18 4.26 4.77 -3.31 -0.02 4.24 16 11 C -0.12 -2.15 4.01 -88.60 -0.36 -2.50 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C 0.12 2.11 6.23 -3.57 -0.02 2.09 16 14 N -0.61 -10.01 3.31 -172.18 -0.57 -10.58 16 15 C 0.53 9.01 7.91 -10.99 -0.09 8.92 16 16 O -0.53 -11.07 16.81 -14.35 -0.24 -11.32 16 17 C 0.05 0.67 5.45 36.01 0.20 0.86 16 18 O -0.36 -5.09 9.87 -55.14 -0.54 -5.64 16 19 C 0.07 0.68 5.92 37.16 0.22 0.90 16 20 C -0.08 -0.73 5.72 -27.88 -0.16 -0.89 16 21 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 22 C -0.11 -0.91 9.70 -39.58 -0.38 -1.30 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 27 C 0.11 1.60 5.87 -3.29 -0.02 1.58 16 28 C -0.11 -1.70 4.14 -88.26 -0.37 -2.07 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 C 0.15 2.74 6.41 -3.44 -0.02 2.72 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 33 H 0.05 1.32 6.58 -51.93 -0.34 0.98 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.43 7.44 -51.93 -0.39 1.04 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.08 1.35 7.76 -51.93 -0.40 0.95 16 48 H 0.06 0.73 7.61 -51.93 -0.40 0.34 16 49 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 50 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -33.32 403.57 -11.88 -45.20 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.19 Total: -0.90 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.38 Total: 1.49 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.58 Total: -51.63 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.79 Total: -16.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.32 -11.88 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733577831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.229 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds