Wall clock time and date at job start Wed Apr 1 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48493 * 109.47365 * 270.00415 * 3 2 1 5 5 H 1.48505 * 109.46959 * 30.00119 * 3 2 1 6 6 H 1.48496 * 109.46916 * 149.99968 * 3 2 1 7 7 C 1.38808 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.47168 * 125.25317 * 359.14165 * 9 7 2 11 11 C 1.53698 * 107.73381 * 180.39763 * 10 9 7 12 12 H 1.09001 * 113.05661 * 254.94677 * 11 10 9 13 13 C 1.53723 * 109.34082 * 128.69302 * 11 10 9 14 14 N 1.46669 * 107.94089 * 266.25259 * 13 11 10 15 15 C 1.34777 * 125.33484 * 180.54906 * 14 13 11 16 16 O 1.21277 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00049 * 180.02562 * 15 14 13 18 18 O 1.42894 * 109.47529 * 180.02562 * 17 15 14 19 19 C 1.42895 * 114.00459 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47391 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47116 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00109 * 269.72529 * 21 20 19 23 23 C 1.38238 * 119.99754 * 179.76611 * 22 21 20 24 24 C 1.38234 * 120.00038 * 0.48818 * 23 22 21 25 25 C 1.38238 * 120.00047 * 359.78460 * 24 23 22 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 24 23 27 27 C 1.46775 * 109.32424 * 0.81214 * 14 13 11 28 28 C 1.54160 * 106.52666 * 341.08729 * 27 14 13 29 29 H 1.09004 * 113.23720 * 266.01847 * 28 27 14 30 30 C 1.46740 * 125.32941 * 180.02562 * 9 7 2 31 31 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 32 32 H 1.08995 * 108.95483 * 61.37735 * 10 9 7 33 33 H 1.08997 * 110.84222 * 300.49472 * 10 9 7 34 34 H 1.08999 * 109.77099 * 146.63720 * 13 11 10 35 35 H 1.08994 * 109.77356 * 25.87347 * 13 11 10 36 36 H 1.08999 * 109.47204 * 59.99091 * 17 15 14 37 37 H 1.09005 * 109.46977 * 299.99702 * 17 15 14 38 38 H 1.09000 * 109.47558 * 59.99233 * 19 18 17 39 39 H 1.09008 * 109.47043 * 299.99918 * 19 18 17 40 40 H 1.09000 * 109.46884 * 60.00145 * 20 19 18 41 41 H 1.09000 * 109.46955 * 299.99461 * 20 19 18 42 42 H 1.08004 * 119.99934 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.99931 * 180.25459 * 23 22 21 44 44 H 1.08001 * 120.00294 * 179.76932 * 24 23 22 45 45 H 1.08000 * 120.00559 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00165 * 179.97438 * 26 25 24 47 47 H 1.08993 * 110.02668 * 100.51188 * 27 14 13 48 48 H 1.09001 * 110.02610 * 221.92674 * 27 14 13 49 49 H 1.09002 * 110.00908 * 42.34245 * 30 9 7 50 50 H 1.09007 * 110.01279 * 280.98014 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1398 -2.5229 0.0180 11 6 -0.4718 -4.0236 0.0210 12 1 -0.8306 -4.3834 -0.9433 13 6 -1.4526 -4.3257 1.1655 14 7 -0.6693 -4.7381 2.3349 15 6 -1.1810 -5.0943 3.5297 16 8 -2.3816 -5.0890 3.7012 17 6 -0.2613 -5.4981 4.6532 18 8 -1.0359 -5.8291 5.8074 19 6 -0.2558 -6.2272 6.9365 20 6 -1.1840 -6.5555 8.1076 21 6 -0.3612 -6.9760 9.2981 22 6 -0.0447 -8.3088 9.4835 23 6 0.7142 -8.6939 10.5730 24 6 1.1479 -7.7474 11.4824 25 6 0.8266 -6.4154 11.3001 26 6 0.0722 -6.0296 10.2078 27 6 0.7596 -4.6959 2.0018 28 6 0.8517 -4.7082 0.4630 29 1 0.9785 -5.7080 0.0477 30 6 1.9381 -3.7215 -0.0005 31 1 -0.4851 0.8400 0.0004 32 1 -0.5496 -2.0567 -0.8779 33 1 -0.5615 -2.0505 0.9051 34 1 -2.1265 -5.1302 0.8708 35 1 -2.0279 -3.4312 1.4038 36 1 0.4085 -4.6713 4.8894 37 1 0.3251 -6.3651 4.3488 38 1 0.4135 -5.4151 7.2203 39 1 0.3314 -7.1090 6.6796 40 1 -1.8535 -7.3675 7.8240 41 1 -1.7708 -5.6735 8.3644 42 1 -0.3867 -9.0487 8.7750 43 1 0.9650 -9.7346 10.7156 44 1 1.7376 -8.0487 12.3356 45 1 1.1650 -5.6759 12.0108 46 1 -0.1792 -4.9889 10.0656 47 1 1.2085 -3.7852 2.3981 48 1 1.2644 -5.5705 2.4118 49 1 2.7818 -3.7444 0.6893 50 1 2.2711 -3.9790 -1.0060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733577831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:12 Heat of formation + Delta-G solvation = -43.455767 kcal Electronic energy + Delta-G solvation = -29228.970300 eV Core-core repulsion = 25220.976526 eV Total energy + Delta-G solvation = -4007.993774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55128 -40.29222 -39.81218 -38.47999 -36.55612 -34.43757 -34.12352 -32.19832 -31.76482 -31.08331 -30.15510 -28.57578 -27.06724 -26.86037 -24.53722 -24.25390 -23.45536 -21.90500 -21.80008 -20.80559 -20.55413 -18.86749 -18.36450 -17.82356 -17.69959 -17.24858 -17.16326 -16.55848 -16.40269 -16.08025 -15.83309 -15.60632 -15.51045 -14.89211 -14.62447 -14.52860 -14.24186 -14.17763 -13.84776 -13.77005 -13.57292 -13.55085 -13.29462 -13.23647 -13.06025 -12.74584 -12.65746 -12.41067 -12.32936 -11.98382 -11.95196 -11.87362 -11.84253 -11.80951 -11.51184 -11.34273 -10.94289 -10.72966 -10.67858 -9.81407 -9.69786 -9.64138 -8.85808 -7.84073 -5.18693 0.40973 0.50664 1.45820 1.47159 1.47794 1.55646 1.67217 2.50127 2.72235 2.96810 3.31764 3.34957 3.54005 3.69102 3.86582 3.88611 3.95387 3.97751 4.09489 4.16201 4.18527 4.23150 4.28415 4.31139 4.32400 4.33014 4.44827 4.54027 4.58606 4.62062 4.65348 4.74427 4.85951 4.92574 4.94062 4.94516 5.07598 5.11829 5.17920 5.19086 5.21972 5.42420 5.50238 5.58241 5.64083 5.64572 5.71556 5.79122 6.03355 6.12754 6.22088 6.46408 7.05662 7.11745 7.81811 8.43278 9.26015 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.001975 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.505610 B =14172.780308 C =15202.606611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.198 3.802 11 C -0.112 4.112 12 H 0.115 0.885 13 C 0.125 3.875 14 N -0.608 5.608 15 C 0.520 3.480 16 O -0.578 6.578 17 C 0.057 3.943 18 O -0.395 6.395 19 C 0.067 3.933 20 C -0.076 4.076 21 C -0.092 4.092 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.129 4.129 27 C 0.109 3.891 28 C -0.092 4.092 29 H 0.138 0.862 30 C 0.139 3.861 31 H 0.243 0.757 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.126 0.874 47 H 0.054 0.946 48 H 0.116 0.884 49 H 0.051 0.949 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -20.445 17.452 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.073 3.927 11 C -0.132 4.132 12 H 0.133 0.867 13 C 0.002 3.998 14 N -0.342 5.342 15 C 0.309 3.691 16 O -0.458 6.458 17 C -0.022 4.022 18 O -0.314 6.314 19 C -0.009 4.009 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.013 4.013 28 C -0.112 4.112 29 H 0.156 0.844 30 C 0.014 3.986 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.155 0.845 46 H 0.144 0.856 47 H 0.072 0.928 48 H 0.134 0.866 49 H 0.069 0.931 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.263 -20.252 17.634 27.189 hybrid contribution 0.084 1.794 -0.240 1.812 sum 4.346 -18.457 17.394 25.732 Atomic orbital electron populations 1.70202 1.06362 1.24991 1.58714 1.25646 0.96510 1.01126 1.03088 0.85120 0.77737 0.79374 0.77388 1.21414 1.22804 1.18988 1.19459 0.91112 0.83588 1.42150 0.89441 1.44657 1.02041 1.01450 1.86965 1.20843 0.84118 0.90287 0.97485 1.23001 0.95475 0.96517 0.98216 0.86718 1.21686 0.94175 0.99006 0.84912 1.48282 1.09158 1.65580 1.11145 1.20594 0.88809 0.76921 0.82762 1.90680 1.17730 1.55172 1.82183 1.22209 0.92249 1.02999 0.84721 1.87937 1.34363 1.88069 1.21028 1.22650 0.93672 0.99766 0.84845 1.20403 0.97058 1.02701 0.91148 1.19753 0.99090 0.94183 0.96146 1.21319 0.98792 0.95413 0.98692 1.21465 0.97682 1.00736 0.94432 1.21507 1.00091 0.93177 0.99986 1.21439 0.98223 0.97044 0.97852 1.21308 0.98655 0.99735 0.95030 1.22270 0.80122 1.02817 0.96052 1.23004 0.93972 1.00236 0.93956 0.84445 1.21390 0.94895 0.83750 0.98540 0.94743 0.97726 0.97605 0.90383 0.94345 0.88752 0.86553 0.92334 0.91183 0.90076 0.90848 0.84868 0.84047 0.84127 0.84483 0.85621 0.92757 0.86641 0.93088 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 10.25 21.65 0.22 -57.62 16 2 C -0.07 -4.01 5.48 84.86 0.47 -3.55 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.60 10.25 84.03 0.86 -11.73 16 8 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -30.08 3.39 -696.57 -2.36 -32.44 16 10 C 0.20 9.47 4.77 86.49 0.41 9.88 16 11 C -0.11 -3.80 4.01 -9.48 -0.04 -3.84 16 12 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 13 C 0.13 4.29 6.23 86.59 0.54 4.83 16 14 N -0.61 -19.15 3.31 -817.03 -2.71 -21.86 16 15 C 0.52 17.28 7.91 87.66 0.69 17.97 16 16 O -0.58 -24.68 16.81 16.02 0.27 -24.41 16 17 C 0.06 1.35 5.45 71.24 0.39 1.74 16 18 O -0.39 -10.61 9.87 -129.94 -1.28 -11.89 16 19 C 0.07 1.24 5.92 71.98 0.43 1.67 16 20 C -0.08 -1.37 5.72 29.85 0.17 -1.20 16 21 C -0.09 -1.51 5.13 -19.86 -0.10 -1.61 16 22 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 23 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 24 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 25 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 26 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 27 C 0.11 2.85 5.87 86.72 0.51 3.36 16 28 C -0.09 -2.50 4.14 -9.26 -0.04 -2.54 16 29 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 30 C 0.14 4.83 6.41 86.64 0.56 5.38 16 31 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.00 0.25 7.40 -2.39 -0.02 0.23 16 33 H 0.01 0.32 6.58 -2.39 -0.02 0.31 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.12 1.83 7.88 -2.38 -0.02 1.81 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 41 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 42 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.05 1.73 7.76 -2.39 -0.02 1.71 16 48 H 0.12 1.92 7.61 -2.39 -0.02 1.90 16 49 H 0.05 1.65 7.97 -2.39 -0.02 1.63 16 50 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -77.68 403.57 3.03 -74.65 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.91 Total: 13.23 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.95 Total: 12.74 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.84 Total: -111.92 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.01 Total: -36.30 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.68 3.03 -74.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733577831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.196 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds